Wall clock time and date at job start Fri Apr 10 2020 20:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47113 * 120.00456 * 2 1 4 4 C 1.32871 * 120.00057 * 176.06442 * 3 2 1 5 5 C 1.50698 * 120.00108 * 6.44128 * 4 3 2 6 6 C 1.52992 * 109.47376 * 125.92486 * 5 4 3 7 7 O 1.45195 * 109.47530 * 179.97438 * 6 5 4 8 8 C 1.34233 * 117.00422 * 179.97438 * 7 6 5 9 9 O 1.20827 * 119.99879 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.00063 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.46937 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47290 * 305.00280 * 11 10 8 13 13 C 1.50704 * 109.47017 * 65.00277 * 11 10 8 14 14 H 1.07996 * 119.99610 * 236.34180 * 13 11 10 15 15 C 1.37873 * 120.00111 * 56.34440 * 13 11 10 16 16 N 1.31519 * 119.99864 * 2.32292 * 15 13 11 17 17 Si 1.86802 * 120.00181 * 182.32376 * 15 13 11 18 18 H 1.48503 * 109.46624 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46947 * 119.99576 * 17 15 13 20 20 H 1.48493 * 109.47029 * 240.00172 * 17 15 13 21 21 C 1.50706 * 109.47202 * 184.99966 * 11 10 8 22 22 C 1.38230 * 119.99950 * 151.86483 * 21 11 10 23 23 C 1.38239 * 120.00181 * 179.79172 * 22 21 11 24 24 C 1.38240 * 119.99432 * 0.44117 * 23 22 21 25 25 C 1.38231 * 120.00244 * 359.81182 * 24 23 22 26 26 C 1.38233 * 119.99730 * 332.14175 * 21 11 10 27 27 H 1.08004 * 119.99476 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00290 * 179.71910 * 1 2 3 29 29 H 1.08005 * 119.99512 * 180.02562 * 2 1 3 30 30 H 1.08002 * 119.99894 * 356.07297 * 3 2 1 31 31 H 1.08002 * 119.99688 * 186.44179 * 4 3 2 32 32 H 1.09001 * 109.47227 * 245.92924 * 5 4 3 33 33 H 1.08999 * 109.46989 * 5.92309 * 5 4 3 34 34 H 1.09001 * 109.47299 * 300.00393 * 6 5 4 35 35 H 1.09004 * 109.47059 * 59.99480 * 6 5 4 36 36 H 1.09000 * 109.47353 * 299.99911 * 10 8 7 37 37 H 1.09003 * 109.47329 * 60.00314 * 10 8 7 38 38 H 0.97001 * 119.99575 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.00154 * 359.97438 * 22 21 11 40 40 H 1.07991 * 120.00638 * 180.27007 * 23 22 21 41 41 H 1.08004 * 119.99735 * 179.83810 * 24 23 22 42 42 H 1.08000 * 120.00016 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.00101 * 359.97402 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3907 1.2752 0.0790 5 6 4.1502 -0.0251 0.0222 6 6 5.2056 0.0484 -1.0829 7 8 5.9378 -1.2042 -1.1373 8 6 6.9066 -1.3043 -2.0609 9 8 7.1356 -0.3758 -2.7993 10 6 7.7086 -2.5748 -2.1770 11 6 8.7394 -2.4266 -3.2979 12 1 8.2337 -2.1459 -4.2218 13 6 9.7357 -1.3587 -2.9261 14 1 9.8936 -0.5156 -3.5823 15 6 10.4457 -1.4582 -1.7485 16 7 10.2872 -2.5076 -0.9717 17 14 11.6329 -0.1026 -1.2561 18 1 11.6291 0.9596 -2.2939 19 1 11.2122 0.4750 0.0457 20 1 13.0013 -0.6650 -1.1292 21 6 9.4577 -3.7365 -3.4963 22 6 9.9747 -4.0603 -4.7367 23 6 10.6373 -5.2600 -4.9177 24 6 10.7749 -6.1398 -3.8604 25 6 10.2534 -5.8183 -2.6213 26 6 9.5945 -4.6167 -2.4392 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9353 -0.0046 29 1 1.8687 -0.9354 -0.0004 30 1 1.5263 2.2082 -0.0641 31 1 3.9245 2.2083 0.1839 32 1 4.6390 -0.2026 0.9802 33 1 3.4588 -0.8407 -0.1894 34 1 4.7168 0.2259 -2.0409 35 1 5.8970 0.8642 -0.8713 36 1 8.2220 -2.7678 -1.2350 37 1 7.0414 -3.4063 -2.4041 38 1 10.7870 -2.5777 -0.1433 39 1 9.8635 -3.3748 -5.5638 40 1 11.0450 -5.5111 -5.8857 41 1 11.2903 -7.0783 -4.0024 42 1 10.3613 -6.5056 -1.7951 43 1 9.1871 -4.3655 -1.4712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333945086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:13 Heat of formation + Delta-G solvation = -42.016988 kcal Electronic energy + Delta-G solvation = -23473.862464 eV Core-core repulsion = 20063.395759 eV Total energy + Delta-G solvation = -3410.466705 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31391 -39.85176 -38.01729 -36.98285 -36.04554 -33.46304 -33.01718 -31.43804 -30.54003 -29.70559 -27.90880 -25.02698 -24.00338 -23.04848 -22.65721 -22.00927 -20.97732 -19.28435 -18.51125 -18.26036 -17.66515 -17.31770 -16.91616 -16.63352 -16.24977 -15.62560 -15.50142 -15.39437 -14.99441 -14.61697 -14.21710 -13.81286 -13.52360 -13.44170 -13.27330 -13.17458 -13.09923 -12.90021 -12.83077 -12.76131 -12.61247 -12.30945 -11.93100 -11.81201 -11.72788 -11.56076 -11.31585 -11.22575 -11.11406 -10.96096 -10.48573 -9.39956 -9.25315 -9.13670 -7.98689 -6.17161 0.42734 0.88537 0.99502 1.34598 1.38987 1.48305 1.54609 1.89078 2.25377 2.42544 3.15762 3.36587 3.77892 3.97140 4.02537 4.11386 4.21518 4.31063 4.35928 4.41574 4.47431 4.49650 4.62324 4.66868 4.76549 4.82506 4.84401 4.91164 5.01291 5.05315 5.13250 5.27572 5.44248 5.50135 5.54270 5.59719 5.64223 5.69347 5.77896 5.85860 5.94148 6.00163 6.08497 6.29391 6.39226 6.56962 6.79508 7.10855 7.47211 8.90674 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.003487 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.536139 B = 8028.989846 C = 9142.902772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.162 4.162 3 C -0.127 4.127 4 C -0.152 4.152 5 C -0.090 4.090 6 C 0.067 3.933 7 O -0.370 6.370 8 C 0.469 3.531 9 O -0.530 6.530 10 C -0.106 4.106 11 C 0.086 3.914 12 H 0.024 0.976 13 C -0.500 4.500 14 H 0.034 0.966 15 C 0.032 3.968 16 N -0.885 5.885 17 Si 0.932 3.068 18 H -0.283 1.283 19 H -0.280 1.280 20 H -0.279 1.279 21 C -0.052 4.052 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.082 4.082 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.264 0.736 39 H 0.106 0.894 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.126 0.874 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 -1.207 2.856 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.145 4.145 4 C -0.170 4.170 5 C -0.126 4.126 6 C -0.007 4.007 7 O -0.288 6.288 8 C 0.314 3.686 9 O -0.418 6.418 10 C -0.143 4.143 11 C 0.067 3.933 12 H 0.042 0.958 13 C -0.538 4.538 14 H 0.052 0.948 15 C -0.168 4.168 16 N -0.524 5.524 17 Si 0.760 3.240 18 H -0.209 1.209 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.053 4.053 22 C -0.166 4.166 23 C -0.157 4.157 24 C -0.165 4.165 25 C -0.165 4.165 26 C -0.101 4.101 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.657 -0.955 2.822 13.003 hybrid contribution 1.021 1.333 0.189 1.689 sum -11.636 0.377 3.011 12.025 Atomic orbital electron populations 1.24616 0.95210 1.03100 0.97399 1.22282 0.96197 0.97208 1.02273 1.22125 0.94440 0.97691 1.00257 1.23201 0.95275 0.97802 1.00762 1.20687 0.96228 0.97852 0.97864 1.23008 0.93452 0.83875 1.00365 1.86493 1.46562 1.40330 1.55374 1.24308 0.77011 0.90989 0.76276 1.90557 1.66171 1.41348 1.43762 1.21662 0.95717 0.90265 1.06674 1.17597 0.91976 0.90982 0.92696 0.95805 1.21039 1.22162 1.05568 1.05031 0.94768 1.25316 0.97811 0.97056 0.96592 1.69755 1.42154 1.27480 1.12994 0.85896 0.79761 0.80515 0.77864 1.20875 1.20578 1.20478 1.20188 0.97736 0.94182 0.93180 1.21064 1.00919 0.97578 0.97043 1.21167 1.00441 0.94421 0.99694 1.21216 1.01770 1.00326 0.93176 1.21359 1.00006 0.97354 0.97739 1.21319 0.98133 0.92105 0.98538 0.87292 0.86945 0.86636 0.84937 0.85731 0.89740 0.89149 0.91829 0.92505 0.85255 0.89334 0.92629 0.87581 0.84867 0.84561 0.85574 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 14.43 66.64 0.96 -1.36 16 2 C -0.16 -2.85 9.30 23.42 0.22 -2.63 16 3 C -0.13 -2.28 9.83 23.42 0.23 -2.05 16 4 C -0.15 -3.07 9.59 24.51 0.24 -2.84 16 5 C -0.09 -2.14 5.84 29.84 0.17 -1.96 16 6 C 0.07 2.13 5.45 71.98 0.39 2.52 16 7 O -0.37 -14.30 10.22 -51.44 -0.53 -14.82 16 8 C 0.47 21.24 7.71 71.23 0.55 21.79 16 9 O -0.53 -26.89 14.73 21.96 0.32 -26.57 16 10 C -0.11 -4.73 4.19 29.85 0.13 -4.61 16 11 C 0.09 4.25 1.97 -12.28 -0.02 4.23 16 12 H 0.02 1.20 7.91 -2.39 -0.02 1.18 16 13 C -0.50 -27.51 7.28 25.60 0.19 -27.33 16 14 H 0.03 2.01 7.81 -2.91 -0.02 1.98 16 15 C 0.03 1.71 5.14 84.65 0.43 2.14 16 16 N -0.89 -45.29 7.99 21.45 0.17 -45.12 16 17 Si 0.93 44.01 29.54 68.60 2.03 46.03 16 18 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 C -0.05 -2.40 4.66 -19.87 -0.09 -2.49 16 22 C -0.15 -6.19 9.71 22.27 0.22 -5.97 16 23 C -0.14 -4.94 10.05 22.27 0.22 -4.72 16 24 C -0.15 -4.97 10.05 22.27 0.22 -4.74 16 25 C -0.15 -5.43 10.05 22.27 0.22 -5.21 16 26 C -0.08 -3.56 7.42 22.27 0.17 -3.39 16 27 H 0.11 1.24 8.05 -2.91 -0.02 1.21 16 28 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 29 H 0.12 2.09 5.84 -2.91 -0.02 2.07 16 30 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.02 5.34 -2.39 -0.01 2.01 16 34 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 35 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 36 H 0.13 6.17 4.73 -2.39 -0.01 6.16 16 37 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.26 13.02 8.31 -92.71 -0.77 12.25 16 39 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 41 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 42 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 43 H 0.13 5.75 5.20 -2.91 -0.02 5.74 16 Total: -1.00 -61.09 358.60 7.42 -53.67 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.99 Total: 25.44 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 4.44 Total: -38.62 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.17 Total: -45.12 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.20 Total: -41.39 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -61.09 7.42 -53.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333945086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.648 kcal (2) G-P(sol) polarization free energy of solvation -61.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds