Wall clock time and date at job start Fri Apr 10 2020 20:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47125 * 119.99874 * 2 1 4 4 C 1.32871 * 119.99874 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.00277 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47487 * 124.99510 * 5 4 3 7 7 O 1.45197 * 109.47283 * 180.02562 * 6 5 4 8 8 C 1.34227 * 117.00019 * 180.02562 * 7 6 5 9 9 O 1.20825 * 120.00213 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99983 * 180.02562 * 8 7 6 11 11 C 1.53004 * 109.47436 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46569 * 305.97747 * 11 10 8 13 13 C 1.50704 * 109.46872 * 65.97305 * 11 10 8 14 14 H 1.08001 * 119.99878 * 26.91968 * 13 11 10 15 15 C 1.37875 * 119.99779 * 206.91458 * 13 11 10 16 16 N 1.31517 * 120.00274 * 353.28490 * 15 13 11 17 17 Si 1.86800 * 119.99751 * 173.55288 * 15 13 11 18 18 H 1.48506 * 109.47240 * 179.72593 * 17 15 13 19 19 H 1.48498 * 109.47417 * 299.72707 * 17 15 13 20 20 H 1.48504 * 109.47172 * 59.72983 * 17 15 13 21 21 C 1.50698 * 109.47365 * 185.97649 * 11 10 8 22 22 C 1.38236 * 119.99776 * 294.45070 * 21 11 10 23 23 C 1.38237 * 119.99319 * 179.78839 * 22 21 11 24 24 C 1.38230 * 120.00504 * 0.44116 * 23 22 21 25 25 C 1.38244 * 119.99897 * 359.81315 * 24 23 22 26 26 C 1.38231 * 119.99983 * 114.72558 * 21 11 10 27 27 H 1.07996 * 119.99465 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99650 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00345 * 180.02562 * 2 1 3 30 30 H 1.07997 * 120.00162 * 0.02562 * 3 2 1 31 31 H 1.08011 * 119.99844 * 0.02562 * 4 3 2 32 32 H 1.09005 * 109.46941 * 4.99780 * 5 4 3 33 33 H 1.08995 * 109.47556 * 245.00212 * 5 4 3 34 34 H 1.09003 * 109.46667 * 60.00711 * 6 5 4 35 35 H 1.08995 * 109.47295 * 300.00861 * 6 5 4 36 36 H 1.09004 * 109.47511 * 59.99741 * 10 8 7 37 37 H 1.09000 * 109.47245 * 300.00212 * 10 8 7 38 38 H 0.97003 * 119.99283 * 354.68475 * 16 15 13 39 39 H 1.08002 * 120.00298 * 359.97438 * 22 21 11 40 40 H 1.08004 * 119.99635 * 180.27189 * 23 22 21 41 41 H 1.07997 * 120.00489 * 179.83259 * 24 23 22 42 42 H 1.07997 * 119.99969 * 179.97438 * 25 24 23 43 43 H 1.08008 * 120.00004 * 359.97428 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 3.3930 1.2742 0.0005 5 6 4.1465 2.5792 0.0011 6 6 5.1176 2.6070 1.1832 7 8 5.8432 3.8646 1.1840 8 6 6.7418 4.0490 2.1639 9 8 6.9167 3.1879 2.9931 10 6 7.5326 5.3302 2.2297 11 6 8.4780 5.2849 3.4319 12 1 7.9079 5.0633 4.3341 13 6 9.5139 4.2119 3.2161 14 1 9.7944 3.9260 2.2131 15 6 10.1037 3.5952 4.2991 16 7 9.8623 4.0315 5.5161 17 14 11.2514 2.1449 4.0373 18 1 11.7557 1.6693 5.3507 19 1 10.5148 1.0461 3.3626 20 1 12.3964 2.5663 3.1907 21 6 9.1611 6.6194 3.5844 22 6 10.0369 7.0627 2.6110 23 6 10.6602 8.2889 2.7488 24 6 10.4148 9.0676 3.8642 25 6 9.5429 8.6219 4.8401 26 6 8.9164 7.3977 4.7002 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8687 -0.9352 -0.0004 30 1 1.5243 2.2094 0.0004 31 1 3.9330 0.3387 0.0005 32 1 3.4416 3.4057 0.0905 33 1 4.7047 2.6769 -0.9300 34 1 5.8226 1.7805 1.0937 35 1 4.5594 2.5092 2.1143 36 1 6.8502 6.1734 2.3362 37 1 8.1133 5.4461 1.3146 38 1 9.3321 4.8330 5.6477 39 1 10.2319 6.4524 1.7415 40 1 11.3411 8.6372 1.9863 41 1 10.9038 10.0243 3.9732 42 1 9.3515 9.2301 5.7118 43 1 8.2352 7.0495 5.4626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333945087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:16 Heat of formation + Delta-G solvation = -61.455408 kcal Electronic energy + Delta-G solvation = -23014.619605 eV Core-core repulsion = 19603.309987 eV Total energy + Delta-G solvation = -3411.309618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44611 -40.03951 -37.97231 -36.85746 -36.11755 -33.95797 -33.34523 -31.61707 -30.83540 -29.71488 -27.25137 -25.19916 -24.24175 -23.21620 -22.20226 -21.49673 -21.18301 -20.55555 -18.90127 -18.56628 -17.70575 -17.37928 -17.11023 -16.26810 -16.06372 -15.71491 -15.65145 -15.26257 -15.15225 -14.60361 -14.46878 -14.11320 -13.99819 -13.54573 -13.46354 -13.21491 -13.14279 -12.95213 -12.76076 -12.64245 -12.40691 -12.11259 -11.98151 -11.96097 -11.85043 -11.76040 -11.55467 -11.48158 -11.30980 -10.66528 -10.45806 -9.64450 -9.30850 -9.27560 -8.48796 -6.17641 0.39980 0.67422 0.71485 1.39110 1.48522 1.57528 1.73809 1.75922 2.20204 2.59813 3.09269 3.31972 3.71281 3.88581 3.98206 4.06337 4.10095 4.16184 4.24788 4.28394 4.32257 4.37095 4.44778 4.45459 4.56334 4.62121 4.75128 4.78970 4.83505 4.87141 4.95142 5.05994 5.19086 5.36276 5.38696 5.39555 5.52469 5.60795 5.73955 5.74492 5.80409 5.90334 5.96299 6.19025 6.27719 6.37340 6.72378 6.97777 7.58336 8.91360 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.003122 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.781742 B = 8967.824943 C =10199.940944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.152 4.152 3 C -0.129 4.129 4 C -0.151 4.151 5 C -0.077 4.077 6 C 0.065 3.935 7 O -0.364 6.364 8 C 0.461 3.539 9 O -0.519 6.519 10 C -0.085 4.085 11 C 0.071 3.929 12 H 0.010 0.990 13 C -0.569 4.569 14 H 0.043 0.957 15 C -0.022 4.022 16 N -0.940 5.940 17 Si 1.097 2.903 18 H -0.288 1.288 19 H -0.284 1.284 20 H -0.266 1.266 21 C -0.059 4.059 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.142 4.142 25 C -0.125 4.125 26 C -0.150 4.150 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.262 0.738 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.648 2.252 -12.170 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.147 4.147 4 C -0.169 4.169 5 C -0.114 4.114 6 C -0.009 4.009 7 O -0.282 6.282 8 C 0.304 3.696 9 O -0.405 6.405 10 C -0.123 4.123 11 C 0.053 3.947 12 H 0.028 0.972 13 C -0.607 4.607 14 H 0.061 0.939 15 C -0.221 4.221 16 N -0.577 5.577 17 Si 0.921 3.079 18 H -0.214 1.214 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.059 4.059 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.160 4.160 25 C -0.143 4.143 26 C -0.168 4.168 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.725 0.821 -11.135 15.482 hybrid contribution -0.898 0.531 -0.191 1.061 sum -11.623 1.353 -11.326 16.285 Atomic orbital electron populations 1.24609 0.95314 1.03095 0.97673 1.22126 0.96120 0.96664 1.02078 1.22149 0.94479 0.97684 1.00415 1.23190 0.95205 0.97835 1.00654 1.20547 0.97067 0.96816 0.96996 1.23076 0.94006 0.83518 1.00304 1.86465 1.50404 1.40902 1.50420 1.24104 0.77430 0.90031 0.78003 1.90698 1.64082 1.45265 1.40501 1.21409 0.97228 0.91394 1.02241 1.17762 0.93173 0.90736 0.93071 0.97155 1.21847 1.23814 1.20941 0.94054 0.93892 1.26767 0.99439 1.03251 0.92649 1.70825 1.39220 1.24510 1.23175 0.83203 0.75085 0.73826 0.75767 1.21365 1.21035 1.19131 1.20517 0.96718 0.94423 0.94261 1.21029 0.97063 0.96330 0.99480 1.21412 0.99766 0.94227 0.98876 1.21329 0.99320 1.00989 0.94340 1.21307 0.97481 0.95664 0.99842 1.21134 1.01943 0.95850 0.97921 0.86675 0.87643 0.86551 0.85945 0.86430 0.89474 0.88804 0.92171 0.92311 0.87651 0.87341 0.92754 0.86702 0.83926 0.83517 0.84600 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 14.43 66.64 0.96 -1.24 16 2 C -0.15 -2.41 9.83 23.43 0.23 -2.18 16 3 C -0.13 -2.26 9.44 23.43 0.22 -2.03 16 4 C -0.15 -2.86 9.22 24.51 0.23 -2.64 16 5 C -0.08 -1.61 6.04 29.85 0.18 -1.43 16 6 C 0.06 1.91 5.45 71.98 0.39 2.30 16 7 O -0.36 -12.62 10.22 -51.39 -0.53 -13.15 16 8 C 0.46 19.55 7.71 71.24 0.55 20.10 16 9 O -0.52 -26.74 14.77 21.97 0.32 -26.42 16 10 C -0.09 -3.40 5.07 29.85 0.15 -3.25 16 11 C 0.07 3.50 1.23 -12.28 -0.02 3.49 16 12 H 0.01 0.58 6.59 -2.39 -0.02 0.56 16 13 C -0.57 -31.40 6.35 25.60 0.16 -31.23 16 14 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 15 C -0.02 -1.29 5.45 84.65 0.46 -0.83 16 16 N -0.94 -59.06 13.56 21.45 0.29 -58.77 16 17 Si 1.10 53.10 29.91 68.60 2.05 55.16 16 18 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C -0.06 -2.59 4.54 -19.87 -0.09 -2.68 16 22 C -0.12 -4.74 8.90 22.27 0.20 -4.55 16 23 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 24 C -0.14 -4.31 10.05 22.27 0.22 -4.09 16 25 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 26 C -0.15 -6.24 9.18 22.27 0.20 -6.04 16 27 H 0.12 1.13 8.06 -2.91 -0.02 1.11 16 28 H 0.11 1.20 8.05 -2.91 -0.02 1.17 16 29 H 0.12 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.12 1.88 7.87 -2.91 -0.02 1.86 16 31 H 0.12 2.14 8.05 -2.91 -0.02 2.12 16 32 H 0.09 1.65 7.82 -2.38 -0.02 1.63 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 35 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 36 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 37 H 0.11 3.95 7.97 -2.39 -0.02 3.93 16 38 H 0.26 16.41 6.24 -92.71 -0.58 15.83 16 39 H 0.11 4.42 7.85 -2.91 -0.02 4.40 16 40 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.10 4.18 7.95 -2.91 -0.02 4.16 16 Total: -1.00 -71.80 371.80 7.80 -64.00 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.16 Total: 23.33 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 4.50 Total: -44.14 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.29 Total: -58.77 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.20 Total: -39.57 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 2.05 Total: 55.16 kcal Total: -71.80 7.80 -64.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333945087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.543 kcal (2) G-P(sol) polarization free energy of solvation -71.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds