Wall clock time and date at job start Fri Apr 10 2020 20:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47117 * 119.99850 * 2 1 4 4 C 1.32866 * 119.99822 * 175.26143 * 3 2 1 5 5 C 1.50701 * 119.99939 * 6.16332 * 4 3 2 6 6 C 1.53005 * 109.46979 * 126.02853 * 5 4 3 7 7 O 1.45204 * 109.47196 * 179.97438 * 6 5 4 8 8 C 1.34230 * 117.00145 * 179.97438 * 7 6 5 9 9 O 1.20828 * 120.00048 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99916 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47220 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46919 * 54.99862 * 11 10 8 13 13 C 1.50704 * 109.47241 * 295.00303 * 11 10 8 14 14 H 1.07990 * 119.99771 * 325.05802 * 13 11 10 15 15 C 1.37880 * 119.99937 * 145.05613 * 13 11 10 16 16 N 1.31519 * 120.00047 * 5.08245 * 15 13 11 17 17 Si 1.86795 * 119.99981 * 185.08071 * 15 13 11 18 18 H 1.48502 * 109.47170 * 59.99925 * 17 15 13 19 19 H 1.48502 * 109.47401 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47085 * 299.99975 * 17 15 13 21 21 C 1.50696 * 109.47368 * 175.00084 * 11 10 8 22 22 C 1.38239 * 120.00161 * 64.64148 * 21 11 10 23 23 C 1.38226 * 120.00243 * 179.78922 * 22 21 11 24 24 C 1.38247 * 119.99930 * 0.44083 * 23 22 21 25 25 C 1.38229 * 119.99511 * 359.80736 * 24 23 22 26 26 C 1.38230 * 120.00580 * 359.97438 * 25 24 23 27 27 H 1.08003 * 120.00060 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00071 * 359.73084 * 1 2 3 29 29 H 1.07998 * 119.99728 * 179.97438 * 2 1 3 30 30 H 1.07993 * 119.99996 * 355.25875 * 3 2 1 31 31 H 1.08005 * 120.00227 * 186.16000 * 4 3 2 32 32 H 1.09003 * 109.47243 * 246.02304 * 5 4 3 33 33 H 1.08996 * 109.47165 * 6.02812 * 5 4 3 34 34 H 1.08999 * 109.47111 * 299.99559 * 6 5 4 35 35 H 1.08996 * 109.47205 * 59.99984 * 6 5 4 36 36 H 1.08993 * 109.47590 * 300.00346 * 10 8 7 37 37 H 1.09007 * 109.47266 * 59.99880 * 10 8 7 38 38 H 0.96992 * 119.99828 * 179.97438 * 16 15 13 39 39 H 1.08004 * 119.99476 * 359.97438 * 22 21 11 40 40 H 1.07999 * 120.00291 * 180.26899 * 23 22 21 41 41 H 1.07995 * 119.99850 * 179.83865 * 24 23 22 42 42 H 1.08004 * 119.99575 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00050 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3895 1.2761 0.0951 5 6 4.1492 -0.0251 0.0629 6 6 5.2197 0.0362 -1.0285 7 8 5.9521 -1.2172 -1.0591 8 6 6.9334 -1.3276 -1.9683 9 8 7.1723 -0.4075 -2.7142 10 6 7.7373 -2.5991 -2.0587 11 6 8.7823 -2.4640 -3.1679 12 1 9.3903 -1.5772 -2.9882 13 6 8.0881 -2.3357 -4.4993 14 1 7.1683 -2.8710 -4.6824 15 6 8.6273 -1.5347 -5.4836 16 7 9.7968 -0.9623 -5.2983 17 14 7.6967 -1.2626 -7.0803 18 1 6.3831 -0.6353 -6.7869 19 1 8.4853 -0.3696 -7.9668 20 1 7.4823 -2.5671 -7.7567 21 6 9.6655 -3.6850 -3.1775 22 6 9.1306 -4.9225 -3.4832 23 6 9.9415 -6.0419 -3.4963 24 6 11.2856 -5.9252 -3.1947 25 6 11.8193 -4.6886 -2.8840 26 6 11.0094 -3.5685 -2.8753 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0044 29 1 1.8687 -0.9353 0.0004 30 1 1.5271 2.2077 -0.0773 31 1 3.9224 2.2101 0.1953 32 1 4.6249 -0.1921 1.0294 33 1 3.4604 -0.8428 -0.1492 34 1 4.7441 0.2032 -1.9950 35 1 5.9085 0.8539 -0.8164 36 1 8.2377 -2.7810 -1.1077 37 1 7.0733 -3.4334 -2.2852 38 1 10.1762 -0.3991 -5.9909 39 1 8.0797 -5.0143 -3.7148 40 1 9.5245 -7.0080 -3.7394 41 1 11.9186 -6.8002 -3.2024 42 1 12.8693 -4.5975 -2.6479 43 1 11.4264 -2.6024 -2.6321 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333945088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:19 Heat of formation + Delta-G solvation = -37.299336 kcal Electronic energy + Delta-G solvation = -23186.391600 eV Core-core repulsion = 19776.129468 eV Total energy + Delta-G solvation = -3410.262132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71214 -38.36758 -36.92157 -35.69983 -34.01909 -32.57523 -31.52103 -30.02654 -29.41558 -28.60093 -25.79014 -23.61972 -22.62447 -21.92544 -21.64795 -20.53296 -19.29453 -18.44810 -16.92213 -16.61719 -16.31944 -15.82182 -15.59504 -15.23275 -14.84339 -14.45065 -14.12788 -13.89394 -13.69819 -12.94409 -12.69186 -12.59349 -12.48290 -12.28348 -12.18304 -11.89354 -11.71737 -11.60578 -11.48230 -10.97732 -10.86447 -10.75908 -10.70936 -10.62063 -10.28459 -10.11016 -10.01405 -9.56491 -9.40626 -9.06727 -8.52760 -8.40853 -8.05827 -7.64674 -5.98565 -3.99764 1.15243 2.27531 2.31669 2.85123 3.18551 3.36381 3.37742 3.40122 3.43601 4.47850 4.57759 4.72817 4.85004 4.94368 5.08598 5.16767 5.37078 5.45395 5.50580 5.54406 5.65534 5.71436 5.72260 5.81673 5.82830 6.03273 6.08264 6.12687 6.19585 6.26912 6.33281 6.39668 6.47200 6.49704 6.70492 6.73226 6.87675 6.99370 7.18603 7.29824 7.40054 7.49394 7.80314 7.91691 8.00377 8.31139 8.72656 9.00747 9.63311 11.11410 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.003449 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.714065 B = 8115.232584 C = 9191.518802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.133 4.133 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.100 4.100 6 C 0.072 3.928 7 O -0.376 6.376 8 C 0.455 3.545 9 O -0.466 6.466 10 C -0.094 4.094 11 C 0.076 3.924 12 H 0.075 0.925 13 C -0.502 4.502 14 H 0.052 0.948 15 C 0.080 3.920 16 N -0.880 5.880 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.023 4.023 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.128 4.128 26 C -0.119 4.119 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.261 0.739 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.203 -1.210 11.251 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.150 4.150 3 C -0.156 4.156 4 C -0.152 4.152 5 C -0.136 4.136 6 C -0.002 4.002 7 O -0.295 6.295 8 C 0.296 3.704 9 O -0.349 6.349 10 C -0.132 4.132 11 C 0.057 3.943 12 H 0.093 0.907 13 C -0.539 4.539 14 H 0.070 0.930 15 C -0.123 4.123 16 N -0.516 5.516 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.023 4.023 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.172 4.172 25 C -0.146 4.146 26 C -0.137 4.137 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.999 -0.751 10.911 14.164 hybrid contribution -0.448 0.390 -1.210 1.348 sum -9.447 -0.361 9.702 13.546 Atomic orbital electron populations 1.24356 0.95651 1.01854 1.00203 1.22193 0.95465 0.97313 1.00048 1.21895 0.94716 0.96874 1.02085 1.23248 0.94928 0.98356 0.98658 1.20758 0.97102 0.96483 0.99308 1.22727 0.93102 0.85153 0.99264 1.86488 1.46865 1.39162 1.57017 1.23972 0.78244 0.91033 0.77112 1.90722 1.65232 1.40062 1.38844 1.21612 0.97966 0.91982 1.01677 1.17911 0.91192 0.92659 0.92534 0.90707 1.20690 1.07875 1.28016 0.97335 0.92973 1.24812 0.94483 0.94822 0.98216 1.69892 1.16259 1.31478 1.34020 0.86743 0.80220 0.78048 0.83468 1.20275 1.21319 1.20357 1.20632 0.94410 0.95516 0.91755 1.20965 0.99695 0.92275 1.00214 1.20984 0.94121 0.98081 1.01753 1.20812 0.95388 0.96925 1.04065 1.20978 0.98789 0.93220 1.01617 1.21083 0.94079 0.97736 1.00789 0.88156 0.88544 0.86207 0.86632 0.86463 0.89885 0.89810 0.91495 0.91642 0.90449 0.89402 0.92949 0.86759 0.87576 0.87741 0.87571 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 14.43 28.88 0.42 -1.09 16 2 C -0.13 -1.26 9.30 -37.83 -0.35 -1.61 16 3 C -0.14 -1.32 9.83 -37.83 -0.37 -1.69 16 4 C -0.13 -1.34 9.59 -36.16 -0.35 -1.69 16 5 C -0.10 -1.12 5.84 -27.88 -0.16 -1.28 16 6 C 0.07 1.07 5.45 37.16 0.20 1.27 16 7 O -0.38 -6.59 10.22 -39.26 -0.40 -6.99 16 8 C 0.46 9.47 7.71 36.00 0.28 9.75 16 9 O -0.47 -11.53 14.73 -18.75 -0.28 -11.80 16 10 C -0.09 -1.86 5.07 -27.89 -0.14 -2.01 16 11 C 0.08 1.79 1.69 -92.93 -0.16 1.63 16 12 H 0.07 2.01 6.94 -51.93 -0.36 1.65 16 13 C -0.50 -13.34 6.32 -34.44 -0.22 -13.56 16 14 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 15 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 16 N -0.88 -25.56 12.84 55.43 0.71 -24.85 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 22 C -0.11 -2.27 8.87 -39.59 -0.35 -2.62 16 23 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 24 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 25 C -0.13 -2.33 10.05 -39.59 -0.40 -2.72 16 26 C -0.12 -2.47 9.67 -39.58 -0.38 -2.85 16 27 H 0.10 0.71 8.06 -52.48 -0.42 0.28 16 28 H 0.10 0.70 8.05 -52.48 -0.42 0.27 16 29 H 0.12 1.12 5.83 -52.49 -0.31 0.81 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.91 5.33 -51.93 -0.28 0.64 16 34 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 35 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.61 7.85 -51.93 -0.41 1.20 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.11 2.21 7.80 -52.48 -0.41 1.80 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 43 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -30.88 369.58 -9.17 -40.04 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.37 Total: 4.11 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -3.38 Total: -23.09 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.71 Total: -24.85 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.68 Total: -18.79 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.88 -9.17 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333945088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.744 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds