Wall clock time and date at job start Fri Apr 10 2020 20:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47117 * 119.99850 * 2 1 4 4 C 1.32866 * 119.99822 * 175.26143 * 3 2 1 5 5 C 1.50701 * 119.99939 * 6.16332 * 4 3 2 6 6 C 1.53005 * 109.46979 * 126.02853 * 5 4 3 7 7 O 1.45204 * 109.47196 * 179.97438 * 6 5 4 8 8 C 1.34230 * 117.00145 * 179.97438 * 7 6 5 9 9 O 1.20828 * 120.00048 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99916 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47220 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46919 * 54.99862 * 11 10 8 13 13 C 1.50704 * 109.47241 * 295.00303 * 11 10 8 14 14 H 1.07990 * 119.99771 * 325.05802 * 13 11 10 15 15 C 1.37880 * 119.99937 * 145.05613 * 13 11 10 16 16 N 1.31519 * 120.00047 * 5.08245 * 15 13 11 17 17 Si 1.86795 * 119.99981 * 185.08071 * 15 13 11 18 18 H 1.48502 * 109.47170 * 59.99925 * 17 15 13 19 19 H 1.48502 * 109.47401 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47085 * 299.99975 * 17 15 13 21 21 C 1.50696 * 109.47368 * 175.00084 * 11 10 8 22 22 C 1.38239 * 120.00161 * 64.64148 * 21 11 10 23 23 C 1.38226 * 120.00243 * 179.78922 * 22 21 11 24 24 C 1.38247 * 119.99930 * 0.44083 * 23 22 21 25 25 C 1.38229 * 119.99511 * 359.80736 * 24 23 22 26 26 C 1.38230 * 120.00580 * 359.97438 * 25 24 23 27 27 H 1.08003 * 120.00060 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00071 * 359.73084 * 1 2 3 29 29 H 1.07998 * 119.99728 * 179.97438 * 2 1 3 30 30 H 1.07993 * 119.99996 * 355.25875 * 3 2 1 31 31 H 1.08005 * 120.00227 * 186.16000 * 4 3 2 32 32 H 1.09003 * 109.47243 * 246.02304 * 5 4 3 33 33 H 1.08996 * 109.47165 * 6.02812 * 5 4 3 34 34 H 1.08999 * 109.47111 * 299.99559 * 6 5 4 35 35 H 1.08996 * 109.47205 * 59.99984 * 6 5 4 36 36 H 1.08993 * 109.47590 * 300.00346 * 10 8 7 37 37 H 1.09007 * 109.47266 * 59.99880 * 10 8 7 38 38 H 0.96992 * 119.99828 * 179.97438 * 16 15 13 39 39 H 1.08004 * 119.99476 * 359.97438 * 22 21 11 40 40 H 1.07999 * 120.00291 * 180.26899 * 23 22 21 41 41 H 1.07995 * 119.99850 * 179.83865 * 24 23 22 42 42 H 1.08004 * 119.99575 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00050 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3895 1.2761 0.0951 5 6 4.1492 -0.0251 0.0629 6 6 5.2197 0.0362 -1.0285 7 8 5.9521 -1.2172 -1.0591 8 6 6.9334 -1.3276 -1.9683 9 8 7.1723 -0.4075 -2.7142 10 6 7.7373 -2.5991 -2.0587 11 6 8.7823 -2.4640 -3.1679 12 1 9.3903 -1.5772 -2.9882 13 6 8.0881 -2.3357 -4.4993 14 1 7.1683 -2.8710 -4.6824 15 6 8.6273 -1.5347 -5.4836 16 7 9.7968 -0.9623 -5.2983 17 14 7.6967 -1.2626 -7.0803 18 1 6.3831 -0.6353 -6.7869 19 1 8.4853 -0.3696 -7.9668 20 1 7.4823 -2.5671 -7.7567 21 6 9.6655 -3.6850 -3.1775 22 6 9.1306 -4.9225 -3.4832 23 6 9.9415 -6.0419 -3.4963 24 6 11.2856 -5.9252 -3.1947 25 6 11.8193 -4.6886 -2.8840 26 6 11.0094 -3.5685 -2.8753 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0044 29 1 1.8687 -0.9353 0.0004 30 1 1.5271 2.2077 -0.0773 31 1 3.9224 2.2101 0.1953 32 1 4.6249 -0.1921 1.0294 33 1 3.4604 -0.8428 -0.1492 34 1 4.7441 0.2032 -1.9950 35 1 5.9085 0.8539 -0.8164 36 1 8.2377 -2.7810 -1.1077 37 1 7.0733 -3.4334 -2.2852 38 1 10.1762 -0.3991 -5.9909 39 1 8.0797 -5.0143 -3.7148 40 1 9.5245 -7.0080 -3.7394 41 1 11.9186 -6.8002 -3.2024 42 1 12.8693 -4.5975 -2.6479 43 1 11.4264 -2.6024 -2.6321 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333945088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:19 Heat of formation + Delta-G solvation = -50.982595 kcal Electronic energy + Delta-G solvation = -23186.984951 eV Core-core repulsion = 19776.129468 eV Total energy + Delta-G solvation = -3410.855483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32451 -39.87819 -38.02569 -36.97449 -35.81814 -33.59426 -33.32725 -31.49864 -30.73355 -29.76886 -27.66234 -25.10355 -24.00247 -23.13835 -22.66369 -22.04290 -20.95407 -19.28581 -18.58285 -18.41117 -17.63181 -17.34261 -17.00894 -16.48061 -16.32928 -15.66888 -15.56837 -15.46424 -15.02728 -14.41864 -14.30607 -13.96094 -13.69729 -13.62251 -13.27966 -13.22787 -13.18233 -12.88731 -12.81565 -12.70394 -12.57193 -12.50216 -11.83776 -11.82789 -11.72685 -11.56425 -11.37557 -11.31157 -11.18208 -10.96028 -10.47700 -9.53483 -9.25981 -9.20781 -8.07741 -6.11915 0.42476 0.78693 0.82953 1.35565 1.39298 1.43675 1.51843 1.83740 2.23728 2.43912 3.17337 3.33672 3.76978 3.96580 3.99949 4.10357 4.20420 4.24800 4.34531 4.36346 4.38807 4.46294 4.52978 4.56383 4.67327 4.71849 4.84386 4.86253 4.93055 4.96135 5.02683 5.18188 5.36743 5.43983 5.49192 5.58240 5.60050 5.64833 5.75754 5.77339 5.84602 5.94520 5.99689 6.13635 6.38143 6.46205 6.95888 7.09833 7.52228 9.01674 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.003449 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.714065 B = 8115.232584 C = 9191.518802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.161 4.161 3 C -0.131 4.131 4 C -0.152 4.152 5 C -0.088 4.088 6 C 0.067 3.933 7 O -0.366 6.366 8 C 0.459 3.541 9 O -0.515 6.515 10 C -0.091 4.091 11 C 0.079 3.921 12 H 0.031 0.969 13 C -0.498 4.498 14 H 0.050 0.950 15 C 0.028 3.972 16 N -0.915 5.915 17 Si 0.934 3.066 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.047 4.047 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.146 4.146 25 C -0.128 4.128 26 C -0.142 4.142 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.256 0.744 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.133 0.867 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 -3.436 12.011 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.149 4.149 4 C -0.170 4.170 5 C -0.125 4.125 6 C -0.007 4.007 7 O -0.284 6.284 8 C 0.302 3.698 9 O -0.401 6.401 10 C -0.128 4.128 11 C 0.061 3.939 12 H 0.049 0.951 13 C -0.536 4.536 14 H 0.068 0.932 15 C -0.172 4.172 16 N -0.554 5.554 17 Si 0.761 3.239 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.048 4.048 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.164 4.164 25 C -0.146 4.146 26 C -0.160 4.160 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.151 0.849 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.105 -3.003 11.694 15.745 hybrid contribution -0.204 1.017 -1.338 1.693 sum -10.309 -1.987 10.356 14.747 Atomic orbital electron populations 1.24613 0.95285 1.03054 0.97586 1.22293 0.96172 0.97257 1.02140 1.22124 0.94657 0.97628 1.00463 1.23235 0.95215 0.98015 1.00504 1.20689 0.95985 0.97607 0.98184 1.23003 0.93605 0.83913 1.00145 1.86470 1.45932 1.40498 1.55539 1.24179 0.78310 0.90658 0.76607 1.90709 1.66740 1.41692 1.40957 1.21539 0.97488 0.92089 1.01715 1.17692 0.91651 0.92129 0.92464 0.95064 1.21006 1.07419 1.26787 0.98355 0.93203 1.25472 0.95262 0.95404 1.01025 1.70027 1.17729 1.32948 1.34656 0.85983 0.78779 0.78288 0.80815 1.20800 1.21320 1.19061 1.20458 0.94618 0.95546 0.94178 1.21063 1.00303 0.92338 1.00773 1.21376 0.94266 0.98658 1.00157 1.21282 0.95636 0.97648 1.01799 1.21289 0.99858 0.92780 1.00646 1.21116 0.94300 0.98280 1.02350 0.86964 0.87395 0.86506 0.85149 0.85592 0.88913 0.89397 0.92858 0.91877 0.87768 0.87495 0.93553 0.86577 0.84152 0.83837 0.84914 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 14.43 66.64 0.96 -1.44 16 2 C -0.16 -2.83 9.30 23.43 0.22 -2.61 16 3 C -0.13 -2.33 9.83 23.43 0.23 -2.10 16 4 C -0.15 -2.92 9.59 24.51 0.24 -2.68 16 5 C -0.09 -1.92 5.84 29.85 0.17 -1.75 16 6 C 0.07 2.03 5.45 71.98 0.39 2.42 16 7 O -0.37 -12.87 10.22 -51.42 -0.53 -13.40 16 8 C 0.46 19.56 7.71 71.23 0.55 20.11 16 9 O -0.51 -26.63 14.73 21.96 0.32 -26.31 16 10 C -0.09 -3.61 5.07 29.85 0.15 -3.46 16 11 C 0.08 3.88 1.69 -12.29 -0.02 3.86 16 12 H 0.03 1.78 6.94 -2.38 -0.02 1.76 16 13 C -0.50 -27.14 6.32 25.60 0.16 -26.98 16 14 H 0.05 2.66 7.82 -2.92 -0.02 2.64 16 15 C 0.03 1.60 5.45 84.65 0.46 2.06 16 16 N -0.91 -55.49 12.84 21.45 0.28 -55.22 16 17 Si 0.93 46.14 29.54 68.60 2.03 48.17 16 18 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 C -0.05 -2.10 4.77 -19.87 -0.09 -2.19 16 22 C -0.13 -4.90 8.87 22.27 0.20 -4.70 16 23 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 24 C -0.15 -4.45 10.05 22.27 0.22 -4.23 16 25 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 26 C -0.14 -5.97 9.67 22.27 0.22 -5.76 16 27 H 0.11 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.11 1.28 8.05 -2.91 -0.02 1.25 16 29 H 0.12 2.07 5.83 -2.91 -0.02 2.05 16 30 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 1.85 5.33 -2.39 -0.01 1.84 16 34 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 35 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 36 H 0.10 3.55 8.14 -2.39 -0.02 3.54 16 37 H 0.11 3.83 7.85 -2.38 -0.02 3.82 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.12 4.34 7.80 -2.91 -0.02 4.32 16 40 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.10 4.27 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -69.22 369.58 7.58 -61.64 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.97 Total: 22.58 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 4.50 Total: -37.46 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.22 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.20 Total: -39.71 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -69.22 7.58 -61.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333945088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.655 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds