Wall clock time and date at job start Fri Apr 10 2020 20:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47656 * 2 1 4 4 C 1.50698 * 109.47312 * 239.99523 * 2 1 3 5 5 H 1.07995 * 120.00126 * 245.19332 * 4 2 1 6 6 C 1.37880 * 119.99947 * 65.19046 * 4 2 1 7 7 N 1.31524 * 119.99545 * 5.44297 * 6 4 2 8 8 Si 1.86795 * 120.00221 * 185.44048 * 6 4 2 9 9 H 1.48506 * 109.46935 * 95.00013 * 8 6 4 10 10 H 1.48501 * 109.47417 * 214.99897 * 8 6 4 11 11 H 1.48496 * 109.47254 * 335.00194 * 8 6 4 12 12 N 1.46902 * 109.46752 * 119.99724 * 2 1 3 13 13 C 1.46902 * 111.00181 * 58.95536 * 12 2 1 14 14 C 1.38278 * 111.00324 * 294.99743 * 12 2 1 15 15 N 1.31502 * 126.34133 * 359.97438 * 14 12 2 16 16 N 1.28505 * 110.12437 * 179.74670 * 15 14 12 17 17 C 1.31554 * 109.89430 * 0.44597 * 16 15 14 18 18 C 1.47055 * 126.49742 * 179.81940 * 17 16 15 19 19 C 1.38102 * 125.87786 * 342.93570 * 18 17 16 20 20 C 1.39288 * 107.65769 * 180.02562 * 19 18 17 21 21 C 1.38164 * 107.54074 * 0.02562 * 20 19 18 22 22 C 1.43199 * 125.97546 * 180.02562 * 21 20 19 23 23 N 8.95932 * 121.46588 * 149.02378 * 12 1 2 24 24 N 1.36864 * 125.86933 * 162.98613 * 18 17 16 25 25 H 0.97006 * 125.75139 * 0.22598 * 24 18 17 26 26 N 1.36441 * 126.34278 * 179.97438 * 14 12 2 27 27 C 1.46499 * 127.16610 * 0.02562 * 26 14 12 28 28 H 1.09004 * 109.47172 * 54.63925 * 1 2 3 29 29 H 1.08999 * 109.47387 * 174.63972 * 1 2 3 30 30 H 1.08999 * 109.47582 * 294.64353 * 1 2 3 31 31 H 0.97000 * 119.99324 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47011 * 296.04416 * 13 12 2 33 33 H 1.09006 * 109.47088 * 56.03838 * 13 12 2 34 34 H 1.09000 * 109.47549 * 176.04332 * 13 12 2 35 35 H 1.08003 * 126.17058 * 0.02562 * 19 18 17 36 36 H 1.07997 * 126.22634 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.47099 * 274.37594 * 27 26 14 38 38 H 1.08995 * 109.46927 * 34.37855 * 27 26 14 39 39 H 1.09001 * 109.46619 * 154.37403 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5823 -1.6348 -1.1334 6 6 1.7898 -0.1804 -2.4799 7 7 1.2149 0.9970 -2.5944 8 14 2.2776 -1.1344 -4.0100 9 1 1.1111 -1.9103 -4.5024 10 1 2.7222 -0.1868 -5.0634 11 1 3.3874 -2.0645 -3.6806 12 7 2.0195 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6704 -0.0037 2.3466 15 7 0.9932 1.1221 2.4039 16 7 0.8399 1.4840 3.6274 17 6 1.4190 0.6149 4.4273 18 6 1.4689 0.6757 5.8957 19 6 1.2171 1.7921 6.6686 20 6 1.3712 1.4255 8.0034 21 6 1.7163 0.0879 8.0307 22 6 1.9689 -0.6919 9.2048 23 7 2.1707 -1.3100 10.1362 24 7 1.7738 -0.3644 6.7315 25 1 1.9969 -1.2670 6.4550 26 7 1.9647 -0.3663 3.6286 27 6 2.7073 -1.5514 4.0649 28 1 -0.3634 0.5948 -0.8381 29 1 -0.3634 -1.0231 -0.0960 30 1 -0.3634 0.4285 0.9340 31 1 1.0446 1.3700 -3.4734 32 1 0.4418 -2.0730 1.3348 33 1 1.8165 -2.5950 0.3319 34 1 1.9615 -2.5869 2.1060 35 1 0.9490 2.7727 6.3037 36 1 1.2441 2.0695 8.8610 37 1 2.0248 -2.3970 4.1495 38 1 3.4836 -1.7826 3.3356 39 1 3.1659 -1.3562 5.0342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339852368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:22 Heat of formation + Delta-G solvation = 164.472332 kcal Electronic energy + Delta-G solvation = -23703.837904 eV Core-core repulsion = 20263.370407 eV Total energy + Delta-G solvation = -3440.467497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.95245 -42.06860 -39.11406 -37.61662 -36.17573 -34.75617 -32.41242 -32.29334 -30.76756 -29.69788 -28.71533 -27.24807 -26.76424 -24.44447 -23.63425 -22.37653 -21.73597 -21.12905 -20.19146 -18.42329 -17.98066 -17.56246 -17.14260 -16.86215 -16.30026 -15.91295 -15.65193 -15.37224 -15.05731 -14.60764 -14.57898 -14.37402 -14.26925 -14.09297 -13.85351 -13.68353 -13.45764 -13.22285 -13.11148 -12.92334 -12.67705 -12.56517 -12.40346 -12.15143 -11.97054 -11.50391 -11.25381 -10.96478 -10.90561 -10.50994 -10.14760 -9.58858 -8.68205 -8.13709 -6.25745 -0.15584 0.81001 1.06887 1.17913 1.46463 1.47230 1.51780 1.57855 1.92850 2.15833 2.39902 2.42747 2.89687 2.97009 3.19338 3.25590 3.52950 3.95168 4.08824 4.14571 4.18509 4.28428 4.43832 4.49419 4.59828 4.67346 4.82114 4.91286 4.98925 5.04644 5.09202 5.20623 5.37462 5.50829 5.59251 5.61119 5.74532 5.80373 6.00442 6.08358 6.14214 6.34299 6.53178 6.83732 7.42431 7.74688 8.95797 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.037265 B = 0.003138 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.192912 B = 8922.003799 C = 9466.769501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.239 3.761 3 H 0.012 0.988 4 C -0.525 4.525 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.966 3.034 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.454 5.454 13 C 0.028 3.972 14 C 0.382 3.618 15 N -0.357 5.357 16 N -0.286 5.286 17 C 0.220 3.780 18 C 0.120 3.880 19 C -0.137 4.137 20 C -0.092 4.092 21 C 0.073 3.927 22 C 0.306 3.694 23 N -0.440 5.440 24 N -0.520 5.520 25 H 0.429 0.571 26 N -0.486 5.486 27 C 0.057 3.943 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.263 0.737 32 H 0.029 0.971 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.163 0.837 36 H 0.187 0.813 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 -6.336 19.200 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.133 3.867 3 H 0.030 0.970 4 C -0.564 4.564 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.185 1.185 12 N -0.176 5.176 13 C -0.118 4.118 14 C 0.026 3.974 15 N -0.203 5.203 16 N -0.127 5.127 17 C -0.045 4.045 18 C 0.001 3.999 19 C -0.165 4.165 20 C -0.120 4.120 21 C -0.043 4.043 22 C -0.009 4.009 23 N -0.117 5.117 24 N -0.119 5.119 25 H 0.271 0.729 26 N -0.183 5.183 27 C -0.084 4.084 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.180 0.820 36 H 0.205 0.795 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.284 -6.228 19.902 20.978 hybrid contribution 0.143 -1.289 -1.499 1.982 sum 2.427 -7.517 18.402 20.026 Atomic orbital electron populations 1.22124 0.99219 0.99247 1.00029 1.18975 0.90733 0.93105 0.83891 0.97019 1.21327 1.35950 1.08974 0.90103 0.90775 1.25771 0.95142 0.95492 1.02197 1.70134 1.43634 1.17522 1.24550 0.85422 0.78667 0.78297 0.78505 1.20077 1.21516 1.18502 1.59076 1.55576 1.04375 0.98565 1.22599 0.98232 0.86109 1.04891 1.23101 0.95211 0.94301 0.84822 1.74876 1.19702 1.13645 1.12049 1.74326 1.19120 1.23230 0.95990 1.21749 1.01837 0.89652 0.91285 1.17092 1.10143 0.89768 0.82856 1.21371 1.05196 0.98077 0.91809 1.21543 1.00988 0.91639 0.97836 1.15550 1.16915 0.92978 0.78843 1.24166 0.92306 0.92308 0.92146 1.81373 1.11370 1.07976 1.10982 1.41948 1.54130 1.11788 1.04064 0.72935 1.46307 1.44921 1.22474 1.04592 1.22638 0.97808 0.84614 1.03344 0.93499 0.94496 0.94303 0.92830 0.95218 0.88990 0.88763 0.81962 0.79541 0.87226 0.87654 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.30 8.13 71.98 0.59 -6.71 16 2 C 0.24 12.05 1.90 44.17 0.08 12.13 16 3 H 0.01 0.71 7.93 -2.39 -0.02 0.69 16 4 C -0.53 -27.31 7.93 25.60 0.20 -27.10 16 5 H 0.07 3.63 6.57 -2.91 -0.02 3.61 16 6 C 0.01 0.74 5.28 84.65 0.45 1.19 16 7 N -0.92 -53.26 11.99 21.45 0.26 -53.00 16 8 Si 0.97 41.82 29.54 68.60 2.03 43.85 16 9 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 12 N -0.45 -18.36 4.80 -711.07 -3.41 -21.77 16 13 C 0.03 0.89 8.61 127.69 1.10 1.99 16 14 C 0.38 14.76 6.70 260.15 1.74 16.50 16 15 N -0.36 -15.91 9.31 -58.05 -0.54 -16.45 16 16 N -0.29 -11.01 12.23 -51.12 -0.63 -11.63 16 17 C 0.22 6.38 7.89 135.83 1.07 7.45 16 18 C 0.12 2.39 6.90 40.64 0.28 2.67 16 19 C -0.14 -2.34 10.80 22.49 0.24 -2.10 16 20 C -0.09 -1.08 10.80 22.50 0.24 -0.83 16 21 C 0.07 0.93 6.97 39.45 0.28 1.20 16 22 C 0.31 4.56 15.89 88.33 1.40 5.96 16 23 N -0.44 -8.67 18.54 19.00 0.35 -8.32 16 24 N -0.52 -6.82 5.66 -175.26 -0.99 -7.81 16 25 H 0.43 3.57 6.71 -92.70 -0.62 2.94 16 26 N -0.49 -13.47 3.23 -540.63 -1.75 -15.21 16 27 C 0.06 0.84 8.64 127.77 1.10 1.95 16 28 H 0.05 2.59 6.85 -2.38 -0.02 2.57 16 29 H 0.04 1.69 6.78 -2.39 -0.02 1.67 16 30 H 0.04 1.90 5.79 -2.39 -0.01 1.88 16 31 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.03 0.97 6.63 -2.39 -0.02 0.96 16 33 H 0.09 3.04 6.32 -2.38 -0.02 3.02 16 34 H 0.09 2.07 5.37 -2.39 -0.01 2.06 16 35 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.11 1.02 7.62 -2.39 -0.02 1.00 16 38 H 0.10 1.62 7.80 -2.39 -0.02 1.60 16 39 H 0.11 0.94 6.12 -2.39 -0.01 0.93 16 Total: -1.00 -72.98 327.99 4.61 -68.37 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.50 Total: 7.68 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 8.78 Total: 14.30 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -6.71 Total: -134.19 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -72.98 4.61 -68.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339852368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.844 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds