Wall clock time and date at job start Fri Apr 10 2020 20:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46813 * 2 1 4 4 C 1.50703 * 109.46871 * 119.99235 * 2 1 3 5 5 H 1.07999 * 119.99499 * 119.99935 * 4 2 1 6 6 C 1.37868 * 120.00411 * 300.00209 * 4 2 1 7 7 N 1.31521 * 120.00131 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00290 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47245 * 89.99363 * 8 6 4 10 10 H 1.48493 * 109.47442 * 210.00025 * 8 6 4 11 11 H 1.48506 * 109.46485 * 329.99794 * 8 6 4 12 12 N 1.46890 * 109.47054 * 239.99401 * 2 1 3 13 13 C 1.46907 * 111.00064 * 183.95411 * 12 2 1 14 14 C 1.38279 * 111.00118 * 60.00260 * 12 2 1 15 15 N 1.31502 * 126.33991 * 0.02562 * 14 12 2 16 16 N 1.28513 * 110.12387 * 179.97438 * 15 14 12 17 17 C 1.31548 * 109.89398 * 0.02562 * 16 15 14 18 18 C 1.47058 * 126.50102 * 180.02562 * 17 16 15 19 19 C 1.38110 * 125.86993 * 344.98211 * 18 17 16 20 20 C 1.39282 * 107.65297 * 180.02562 * 19 18 17 21 21 C 1.38155 * 107.54578 * 359.97438 * 20 19 18 22 22 C 1.43200 * 125.97621 * 180.02562 * 21 20 19 23 23 N 8.95650 * 124.82382 * 215.72109 * 12 1 2 24 24 N 1.36860 * 125.87768 * 165.02442 * 18 17 16 25 25 H 0.97000 * 125.74595 * 0.23057 * 24 18 17 26 26 N 1.36441 * 126.34510 * 180.29283 * 14 12 2 27 27 C 1.46500 * 127.16461 * 0.05741 * 26 14 12 28 28 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47074 * 300.00628 * 1 2 3 30 30 H 1.09001 * 109.47276 * 60.00424 * 1 2 3 31 31 H 0.96996 * 119.99905 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46767 * 296.04986 * 13 12 2 33 33 H 1.08997 * 109.46796 * 56.04644 * 13 12 2 34 34 H 1.08994 * 109.47265 * 176.04891 * 13 12 2 35 35 H 1.07995 * 126.17487 * 0.02562 * 19 18 17 36 36 H 1.07999 * 126.22805 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.46974 * 270.17276 * 27 26 14 38 38 H 1.08999 * 109.47576 * 30.17105 * 27 26 14 39 39 H 1.09001 * 109.46908 * 150.17568 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5567 8 14 0.6247 1.2792 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9757 1.9954 3.9067 11 1 0.8470 2.1766 1.4919 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7946 -1.1869 14 6 1.5763 -0.0656 -2.3493 15 7 0.8183 1.0073 -2.4092 16 7 0.5953 1.3232 -3.6347 17 6 1.1979 0.4696 -4.4339 18 6 1.1850 0.4889 -5.9043 19 6 0.3178 1.2155 -6.6964 20 6 0.6404 0.9539 -8.0259 21 6 1.7022 0.0701 -8.0307 22 6 2.3489 -0.4616 -9.1924 23 7 2.8621 -0.8837 -10.1140 24 7 2.0295 -0.2106 -6.7231 25 1 2.7371 -0.8065 -6.4313 26 7 1.8401 -0.4486 -3.6320 27 6 2.6411 -1.5959 -4.0662 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9031 -0.5277 4.4376 32 1 3.9192 0.2043 -1.2299 33 1 3.8069 -1.2915 -0.2717 34 1 3.8164 -1.3723 -2.0498 35 1 -0.4685 1.8687 -6.3479 36 1 0.1502 1.3674 -8.8949 37 1 3.6824 -1.2922 -4.1735 38 1 2.5691 -2.3910 -3.3241 39 1 2.2676 -1.9580 -5.0241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339852387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:25 Heat of formation + Delta-G solvation = 193.214807 kcal Electronic energy + Delta-G solvation = -23772.190948 eV Core-core repulsion = 20332.969818 eV Total energy + Delta-G solvation = -3439.221130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.83992 -41.34664 -37.59197 -36.84209 -35.15506 -32.90435 -31.68124 -31.31816 -30.26354 -28.73125 -27.87477 -25.63511 -24.58821 -23.50803 -22.45633 -21.36247 -20.94011 -20.00597 -19.16493 -17.32839 -16.94047 -16.38767 -15.96490 -15.41681 -15.14251 -14.97130 -14.78891 -14.21993 -13.91263 -13.78566 -13.61043 -13.42609 -13.29486 -13.13155 -12.93626 -12.82152 -12.51788 -12.31524 -11.87946 -11.35655 -11.16583 -10.93330 -10.71369 -10.49146 -10.23033 -10.16250 -9.91565 -9.53016 -9.49542 -9.12712 -8.69614 -8.52488 -7.54961 -6.21017 -4.23649 0.64128 1.67976 1.80556 2.16337 2.48530 2.65820 3.06309 3.17269 3.26616 3.37108 3.42250 3.60222 4.02189 4.12070 4.27905 4.32551 4.70530 4.77545 4.81839 5.02540 5.12691 5.22799 5.30547 5.49378 5.65870 5.73987 5.83881 5.91084 6.22009 6.30985 6.39713 6.41127 6.44582 6.50588 6.65352 6.74709 6.88564 7.02731 7.08722 7.34814 7.45869 7.72968 8.38373 8.76562 8.90310 9.38763 10.90301 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.003373 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.523802 B = 8298.446175 C = 8949.304098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.200 3.800 3 H 0.024 0.976 4 C -0.523 4.523 5 H 0.085 0.915 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.296 1.296 11 H -0.260 1.260 12 N -0.442 5.442 13 C 0.030 3.970 14 C 0.401 3.599 15 N -0.315 5.315 16 N -0.239 5.239 17 C 0.194 3.806 18 C 0.146 3.854 19 C -0.143 4.143 20 C -0.103 4.103 21 C 0.059 3.941 22 C 0.281 3.719 23 N -0.407 5.407 24 N -0.532 5.532 25 H 0.418 0.582 26 N -0.493 5.493 27 C 0.070 3.930 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.267 0.733 32 H 0.034 0.966 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 0.424 -19.721 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.095 3.905 3 H 0.041 0.959 4 C -0.560 4.560 5 H 0.103 0.897 6 C -0.124 4.124 7 N -0.530 5.530 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.224 1.224 11 H -0.185 1.185 12 N -0.165 5.165 13 C -0.117 4.117 14 C 0.047 3.953 15 N -0.161 5.161 16 N -0.081 5.081 17 C -0.069 4.069 18 C 0.027 3.973 19 C -0.169 4.169 20 C -0.132 4.132 21 C -0.056 4.056 22 C -0.035 4.035 23 N -0.084 5.084 24 N -0.131 5.131 25 H 0.258 0.742 26 N -0.191 5.191 27 C -0.074 4.074 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.180 0.820 36 H 0.176 0.824 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.515 0.304 -20.340 20.348 hybrid contribution 0.672 -0.105 0.454 0.818 sum 1.188 0.199 -19.886 19.922 Atomic orbital electron populations 1.22351 0.97182 1.01227 1.00849 1.19812 0.92861 0.93102 0.84708 0.95886 1.20840 1.33288 1.14170 0.87748 0.89734 1.24817 0.95423 0.96702 0.95505 1.69856 1.45034 1.40071 0.98033 0.86905 0.80867 0.83643 0.77346 1.20187 1.22357 1.18515 1.58711 1.11466 1.47343 0.98939 1.22535 0.84014 1.01041 1.04075 1.23240 0.97372 0.90706 0.84009 1.74932 1.20174 1.10621 1.10419 1.74423 1.17515 1.20032 0.96134 1.21231 1.02843 0.92891 0.89975 1.17330 0.95543 0.99853 0.84604 1.21158 1.01649 1.03268 0.90815 1.21232 0.95810 0.98084 0.98039 1.15549 1.02856 1.08002 0.79198 1.24305 0.93170 0.93250 0.92725 1.81341 1.08320 1.08956 1.09826 1.42061 1.28815 1.37729 1.04500 0.74225 1.46109 1.42392 1.24482 1.06077 1.22201 0.94993 0.87860 1.02301 0.92957 0.93573 0.91682 0.92280 0.94718 0.87309 0.92822 0.81991 0.82443 0.90146 0.87485 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.47 37.16 0.31 -3.29 16 2 C 0.20 4.61 1.32 -68.87 -0.09 4.52 16 3 H 0.02 0.58 7.17 -51.93 -0.37 0.20 16 4 C -0.52 -13.64 8.46 -34.44 -0.29 -13.93 16 5 H 0.08 2.32 6.65 -52.49 -0.35 1.97 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 8 Si 0.88 21.50 24.37 -169.99 -4.14 17.36 16 9 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 12 N -0.44 -8.51 4.68 -176.11 -0.82 -9.34 16 13 C 0.03 0.49 9.08 60.07 0.55 1.03 16 14 C 0.40 7.22 6.74 -318.97 -2.15 5.07 16 15 N -0.31 -6.27 8.97 30.30 0.27 -6.00 16 16 N -0.24 -4.20 12.23 32.49 0.40 -3.80 16 17 C 0.19 2.71 7.90 -153.68 -1.21 1.50 16 18 C 0.15 1.51 6.92 -82.09 -0.57 0.94 16 19 C -0.14 -1.29 10.80 -39.24 -0.42 -1.71 16 20 C -0.10 -0.74 10.80 -39.22 -0.42 -1.17 16 21 C 0.06 0.46 6.97 -83.34 -0.58 -0.12 16 22 C 0.28 2.47 15.89 -22.47 -0.36 2.11 16 23 N -0.41 -4.44 18.54 41.84 0.78 -3.66 16 24 N -0.53 -4.13 5.70 -6.75 -0.04 -4.17 16 25 H 0.42 2.36 6.69 -40.82 -0.27 2.09 16 26 N -0.49 -6.72 3.23 -122.23 -0.40 -7.11 16 27 C 0.07 0.59 8.48 59.85 0.51 1.09 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 30 H 0.06 1.43 5.42 -51.93 -0.28 1.15 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 1.93 6.10 -51.93 -0.32 1.61 16 34 H 0.05 0.65 5.41 -51.93 -0.28 0.37 16 35 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.08 0.50 7.83 -51.93 -0.41 0.09 16 38 H 0.11 0.94 7.60 -51.93 -0.39 0.54 16 39 H 0.08 0.46 6.38 -51.93 -0.33 0.13 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -32.35 322.68 -7.20 -39.55 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.05 Total: -0.68 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -4.83 Total: -1.88 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.96 Total: -59.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.35 -7.20 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339852387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.765 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds