Wall clock time and date at job start Fri Apr 10 2020 20:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46813 * 2 1 4 4 C 1.50703 * 109.46871 * 119.99235 * 2 1 3 5 5 H 1.07999 * 119.99499 * 119.99935 * 4 2 1 6 6 C 1.37868 * 120.00411 * 300.00209 * 4 2 1 7 7 N 1.31521 * 120.00131 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00290 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47245 * 89.99363 * 8 6 4 10 10 H 1.48493 * 109.47442 * 210.00025 * 8 6 4 11 11 H 1.48506 * 109.46485 * 329.99794 * 8 6 4 12 12 N 1.46890 * 109.47054 * 239.99401 * 2 1 3 13 13 C 1.46907 * 111.00064 * 183.95411 * 12 2 1 14 14 C 1.38279 * 111.00118 * 60.00260 * 12 2 1 15 15 N 1.31502 * 126.33991 * 0.02562 * 14 12 2 16 16 N 1.28513 * 110.12387 * 179.97438 * 15 14 12 17 17 C 1.31548 * 109.89398 * 0.02562 * 16 15 14 18 18 C 1.47058 * 126.50102 * 180.02562 * 17 16 15 19 19 C 1.38110 * 125.86993 * 344.98211 * 18 17 16 20 20 C 1.39282 * 107.65297 * 180.02562 * 19 18 17 21 21 C 1.38155 * 107.54578 * 359.97438 * 20 19 18 22 22 C 1.43200 * 125.97621 * 180.02562 * 21 20 19 23 23 N 8.95650 * 124.82382 * 215.72109 * 12 1 2 24 24 N 1.36860 * 125.87768 * 165.02442 * 18 17 16 25 25 H 0.97000 * 125.74595 * 0.23057 * 24 18 17 26 26 N 1.36441 * 126.34510 * 180.29283 * 14 12 2 27 27 C 1.46500 * 127.16461 * 0.05741 * 26 14 12 28 28 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47074 * 300.00628 * 1 2 3 30 30 H 1.09001 * 109.47276 * 60.00424 * 1 2 3 31 31 H 0.96996 * 119.99905 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46767 * 296.04986 * 13 12 2 33 33 H 1.08997 * 109.46796 * 56.04644 * 13 12 2 34 34 H 1.08994 * 109.47265 * 176.04891 * 13 12 2 35 35 H 1.07995 * 126.17487 * 0.02562 * 19 18 17 36 36 H 1.07999 * 126.22805 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.46974 * 270.17276 * 27 26 14 38 38 H 1.08999 * 109.47576 * 30.17105 * 27 26 14 39 39 H 1.09001 * 109.46908 * 150.17568 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5567 8 14 0.6247 1.2792 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9757 1.9954 3.9067 11 1 0.8470 2.1766 1.4919 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7946 -1.1869 14 6 1.5763 -0.0656 -2.3493 15 7 0.8183 1.0073 -2.4092 16 7 0.5953 1.3232 -3.6347 17 6 1.1979 0.4696 -4.4339 18 6 1.1850 0.4889 -5.9043 19 6 0.3178 1.2155 -6.6964 20 6 0.6404 0.9539 -8.0259 21 6 1.7022 0.0701 -8.0307 22 6 2.3489 -0.4616 -9.1924 23 7 2.8621 -0.8837 -10.1140 24 7 2.0295 -0.2106 -6.7231 25 1 2.7371 -0.8065 -6.4313 26 7 1.8401 -0.4486 -3.6320 27 6 2.6411 -1.5959 -4.0662 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9031 -0.5277 4.4376 32 1 3.9192 0.2043 -1.2299 33 1 3.8069 -1.2915 -0.2717 34 1 3.8164 -1.3723 -2.0498 35 1 -0.4685 1.8687 -6.3479 36 1 0.1502 1.3674 -8.8949 37 1 3.6824 -1.2922 -4.1735 38 1 2.5691 -2.3910 -3.3241 39 1 2.2676 -1.9580 -5.0241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339852387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:24 Heat of formation + Delta-G solvation = 172.757358 kcal Electronic energy + Delta-G solvation = -23773.078050 eV Core-core repulsion = 20332.969818 eV Total energy + Delta-G solvation = -3440.108232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.01313 -42.07689 -39.12066 -37.61577 -36.25364 -34.82031 -32.52159 -32.38654 -31.85629 -29.81816 -28.74527 -27.28946 -26.16828 -24.50758 -23.77846 -22.36962 -21.79488 -21.16673 -20.18638 -19.03307 -18.11997 -17.60373 -17.21415 -16.85667 -16.43724 -15.96053 -15.67779 -15.61090 -15.13895 -14.77345 -14.60641 -14.48131 -14.26800 -14.19795 -13.98905 -13.87121 -13.68714 -13.55695 -13.22912 -12.92779 -12.81766 -12.45222 -12.37521 -12.17720 -11.82922 -11.50886 -11.32179 -11.12361 -10.84488 -10.77271 -10.15005 -9.68540 -8.72773 -8.33529 -6.37732 -0.17752 0.77732 1.04592 1.13663 1.31233 1.37634 1.46008 1.47717 1.92503 2.12526 2.29649 2.39627 2.74917 2.91879 3.02777 3.22097 3.50386 3.87260 3.99328 4.11665 4.17420 4.24921 4.38720 4.42474 4.53366 4.57245 4.64356 4.70024 4.85130 4.97300 4.98902 5.08013 5.20634 5.31799 5.45712 5.54283 5.58927 5.75138 5.75662 6.04017 6.11075 6.34176 6.46159 6.66229 7.27073 7.66635 8.80863 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.003373 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.523802 B = 8298.446175 C = 8949.304098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.210 3.790 3 H 0.004 0.996 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.031 3.969 7 N -0.934 5.934 8 Si 0.932 3.068 9 H -0.268 1.268 10 H -0.294 1.294 11 H -0.258 1.258 12 N -0.448 5.448 13 C 0.031 3.969 14 C 0.380 3.620 15 N -0.355 5.355 16 N -0.282 5.282 17 C 0.226 3.774 18 C 0.118 3.882 19 C -0.135 4.135 20 C -0.093 4.093 21 C 0.073 3.927 22 C 0.305 3.695 23 N -0.440 5.440 24 N -0.520 5.520 25 H 0.429 0.571 26 N -0.483 5.483 27 C 0.054 3.946 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.269 0.731 32 H 0.028 0.972 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.165 0.835 36 H 0.187 0.813 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 0.436 -23.004 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.103 3.897 3 H 0.022 0.978 4 C -0.551 4.551 5 H 0.082 0.918 6 C -0.168 4.168 7 N -0.574 5.574 8 Si 0.760 3.240 9 H -0.194 1.194 10 H -0.221 1.221 11 H -0.183 1.183 12 N -0.170 5.170 13 C -0.115 4.115 14 C 0.024 3.976 15 N -0.201 5.201 16 N -0.122 5.122 17 C -0.040 4.040 18 C 0.000 4.000 19 C -0.162 4.162 20 C -0.121 4.121 21 C -0.043 4.043 22 C -0.010 4.010 23 N -0.118 5.118 24 N -0.119 5.119 25 H 0.270 0.730 26 N -0.179 5.179 27 C -0.087 4.087 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.183 0.817 36 H 0.204 0.796 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.465 0.293 -23.649 23.656 hybrid contribution 0.758 -0.156 1.182 1.413 sum 1.223 0.138 -22.467 22.501 Atomic orbital electron populations 1.22248 0.96885 1.00962 1.00748 1.19433 0.92975 0.91872 0.85421 0.97808 1.21054 1.31923 1.13135 0.89027 0.91825 1.25468 0.96756 0.99110 0.95474 1.69958 1.46986 1.41880 0.98555 0.86101 0.79790 0.80929 0.77200 1.19395 1.22149 1.18298 1.58597 1.12872 1.47219 0.98338 1.22582 0.82649 1.01196 1.05074 1.22931 0.98456 0.91328 0.84902 1.74748 1.21208 1.11989 1.12143 1.74322 1.20167 1.21956 0.95800 1.21717 0.99967 0.91071 0.91203 1.17100 0.97657 1.02259 0.83013 1.21375 1.01066 1.02301 0.91474 1.21547 0.95181 0.97223 0.98123 1.15554 1.02472 1.07451 0.78778 1.24209 0.92262 0.92306 0.92239 1.81389 1.09396 1.10040 1.10956 1.41944 1.28604 1.37356 1.04045 0.72955 1.46269 1.42117 1.25203 1.04355 1.22671 0.96133 0.86269 1.03617 0.93225 0.94509 0.90898 0.92189 0.95300 0.89461 0.88281 0.81750 0.79606 0.87195 0.87553 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.91 8.47 71.98 0.61 -6.30 16 2 C 0.21 9.81 1.32 44.17 0.06 9.87 16 3 H 0.00 0.22 7.17 -2.39 -0.02 0.20 16 4 C -0.51 -27.50 8.46 25.60 0.22 -27.28 16 5 H 0.06 3.62 6.65 -2.91 -0.02 3.60 16 6 C 0.03 1.76 5.45 84.65 0.46 2.22 16 7 N -0.93 -55.63 13.96 21.44 0.30 -55.33 16 8 Si 0.93 45.05 24.37 68.60 1.67 46.72 16 9 H -0.27 -12.53 6.87 99.48 0.68 -11.84 16 10 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.26 -12.31 6.53 99.48 0.65 -11.66 16 12 N -0.45 -17.22 4.68 -711.08 -3.33 -20.54 16 13 C 0.03 1.00 9.08 127.69 1.16 2.16 16 14 C 0.38 13.45 6.74 260.15 1.75 15.20 16 15 N -0.35 -14.15 8.97 -58.05 -0.52 -14.67 16 16 N -0.28 -9.74 12.23 -51.12 -0.63 -10.36 16 17 C 0.23 5.88 7.90 135.83 1.07 6.96 16 18 C 0.12 2.10 6.92 40.64 0.28 2.38 16 19 C -0.14 -2.01 10.80 22.49 0.24 -1.77 16 20 C -0.09 -0.95 10.80 22.50 0.24 -0.70 16 21 C 0.07 0.84 6.97 39.45 0.27 1.11 16 22 C 0.30 4.29 15.89 88.33 1.40 5.69 16 23 N -0.44 -8.41 18.54 19.01 0.35 -8.06 16 24 N -0.52 -6.03 5.70 -175.26 -1.00 -7.03 16 25 H 0.43 2.99 6.69 -92.71 -0.62 2.37 16 26 N -0.48 -12.17 3.23 -540.61 -1.75 -13.92 16 27 C 0.05 0.72 8.48 127.77 1.08 1.80 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.04 1.72 3.27 -2.38 -0.01 1.71 16 30 H 0.07 3.25 5.42 -2.39 -0.01 3.23 16 31 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 3.16 6.10 -2.39 -0.01 3.15 16 34 H 0.10 2.18 5.41 -2.39 -0.01 2.16 16 35 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 37 H 0.11 0.87 7.83 -2.39 -0.02 0.85 16 38 H 0.11 1.53 7.60 -2.39 -0.02 1.51 16 39 H 0.11 0.81 6.38 -2.39 -0.02 0.79 16 Total: -1.00 -72.80 322.68 4.39 -68.41 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 0.43 Total: 3.44 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 8.86 Total: 11.35 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -6.57 Total: -129.91 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.72 kcal Total: -72.80 4.39 -68.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339852387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.167 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds