Wall clock time and date at job start Fri Apr 10 2020 20:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00001 * 2 1 4 4 H 1.48495 * 109.46889 * 244.99103 * 3 2 1 5 5 H 1.48502 * 109.47105 * 4.98912 * 3 2 1 6 6 H 1.48500 * 109.46913 * 124.98798 * 3 2 1 7 7 C 1.38808 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99824 * 199.57326 * 7 2 1 9 9 N 1.36939 * 120.00159 * 19.58375 * 7 2 1 10 10 C 1.46497 * 120.00130 * 36.56211 * 9 7 2 11 11 N 1.46504 * 109.46964 * 101.05105 * 10 9 7 12 12 C 1.33836 * 133.17513 * 83.89528 * 11 10 9 13 13 O 1.21286 * 133.24112 * 0.04074 * 12 11 10 14 14 C 1.49981 * 93.51668 * 180.29000 * 12 11 10 15 15 C 1.45716 * 133.17827 * 263.94386 * 11 10 9 16 16 H 1.09005 * 113.47287 * 294.79592 * 15 11 10 17 17 C 1.52995 * 113.47165 * 65.19127 * 15 11 10 18 18 C 1.50703 * 109.47136 * 182.27039 * 17 15 11 19 19 C 1.38236 * 119.99761 * 264.20376 * 18 17 15 20 20 C 1.38238 * 119.99670 * 179.74685 * 19 18 17 21 21 C 1.38236 * 120.00045 * 0.52795 * 20 19 18 22 22 C 1.38236 * 119.99729 * 359.74780 * 21 20 19 23 23 C 1.38229 * 120.00359 * 359.97438 * 22 21 20 24 24 C 1.46504 * 119.99951 * 216.56662 * 9 7 2 25 25 C 1.53002 * 117.49700 * 10.76299 * 24 9 7 26 26 C 1.52998 * 117.49828 * 302.13854 * 24 9 7 27 27 H 0.97005 * 120.00013 * 4.87717 * 1 2 3 28 28 H 1.08998 * 109.47122 * 341.05682 * 10 9 7 29 29 H 1.08998 * 109.47346 * 221.04912 * 10 9 7 30 30 H 1.08998 * 113.96414 * 113.72646 * 14 12 11 31 31 H 1.08994 * 113.96777 * 245.76219 * 14 12 11 32 32 H 1.09003 * 109.47501 * 302.26987 * 17 15 11 33 33 H 1.09004 * 109.47363 * 62.26863 * 17 15 11 34 34 H 1.07994 * 120.00366 * 359.97438 * 19 18 17 35 35 H 1.08004 * 119.99894 * 180.29807 * 20 19 18 36 36 H 1.07996 * 120.00051 * 179.77211 * 21 20 19 37 37 H 1.08002 * 119.99404 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.00222 * 179.97438 * 23 22 21 39 39 H 1.08998 * 115.54859 * 156.46754 * 24 9 7 40 40 H 1.09000 * 117.49799 * 359.97438 * 25 24 9 41 41 H 1.08996 * 117.49954 * 145.02053 * 25 24 9 42 42 H 1.08996 * 117.50307 * 214.98020 * 26 24 9 43 43 H 1.08999 * 117.49915 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.0103 1.7504 -1.2688 5 1 1.2898 2.7438 0.1218 6 1 3.1930 1.6450 1.1471 7 6 2.0102 -1.2021 -0.0005 8 1 3.0434 -1.2293 0.3128 9 7 1.3849 -2.3536 -0.3986 10 6 0.4129 -2.3182 -1.4940 11 7 1.0459 -2.7998 -2.7243 12 6 1.2566 -4.0217 -3.2281 13 8 0.9939 -5.1388 -2.8357 14 6 1.9436 -3.4984 -4.4543 15 6 1.6789 -2.1250 -3.8500 16 1 0.9898 -1.5141 -4.4333 17 6 2.9577 -1.3756 -3.4706 18 6 3.5044 -0.6685 -4.6840 19 6 4.4920 -1.2653 -5.4452 20 6 4.9897 -0.6190 -6.5612 21 6 4.5077 0.6288 -6.9097 22 6 3.5241 1.2280 -6.1451 23 6 3.0223 0.5793 -5.0325 24 6 1.6880 -3.6208 0.2712 25 6 2.5103 -3.5597 1.5600 26 6 3.1447 -4.0887 0.2721 27 1 -0.4850 0.8370 -0.0714 28 1 0.0670 -1.2949 -1.6399 29 1 -0.4354 -2.9569 -1.2478 30 1 3.0002 -3.7590 -4.5151 31 1 1.4007 -3.6869 -5.3804 32 1 2.7334 -0.6442 -2.6941 33 1 3.6976 -2.0846 -3.0991 34 1 4.8720 -2.2380 -5.1701 35 1 5.7579 -1.0873 -7.1587 36 1 4.8992 1.1354 -7.7794 37 1 3.1478 2.2031 -6.4172 38 1 2.2542 1.0476 -4.4350 39 1 0.9139 -4.3852 0.2035 40 1 2.8261 -2.5767 1.9093 41 1 2.2773 -4.2839 2.3405 42 1 3.3291 -5.1609 0.2053 43 1 3.8776 -3.4534 -0.2253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348469684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:27 Heat of formation + Delta-G solvation = 68.236112 kcal Electronic energy + Delta-G solvation = -24984.038119 eV Core-core repulsion = 21610.645098 eV Total energy + Delta-G solvation = -3373.393021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57299 -38.94384 -36.97715 -36.02708 -33.63040 -32.63308 -30.97812 -30.78703 -28.65250 -27.20034 -25.04432 -23.19299 -22.69460 -22.35397 -21.38123 -20.64767 -19.96365 -17.94201 -16.94111 -16.66036 -16.16880 -15.71198 -15.55154 -15.15352 -14.88755 -14.77197 -14.44623 -13.87814 -13.33671 -13.08200 -13.07287 -12.87734 -12.52980 -12.32339 -12.00371 -11.84914 -11.48423 -11.31142 -11.11863 -10.98516 -10.91790 -10.82520 -10.65215 -10.56040 -10.45968 -10.16677 -9.70641 -9.39821 -9.21532 -8.82963 -8.65725 -8.57365 -8.05769 -6.80842 -6.05492 -3.61923 1.45787 1.49467 3.16787 3.23090 3.30019 3.31998 3.80172 3.93503 4.28859 4.55692 4.91214 4.94108 4.97334 5.05170 5.09749 5.18208 5.23552 5.28177 5.34391 5.54444 5.61617 5.65428 5.85124 5.92021 5.97928 6.06205 6.09111 6.15015 6.21755 6.28091 6.33706 6.48576 6.55719 6.58966 6.61869 6.64628 6.85024 6.92852 6.96520 7.12009 7.12385 7.50594 7.58607 7.63551 8.27190 8.93877 8.99215 9.54486 10.13338 10.97241 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.006499 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.658743 B = 4307.097747 C = 5730.364694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.018 3.982 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.542 5.542 10 C 0.365 3.635 11 N -0.611 5.611 12 C 0.516 3.484 13 O -0.537 6.537 14 C -0.184 4.184 15 C 0.137 3.863 16 H 0.087 0.913 17 C -0.084 4.084 18 C -0.066 4.066 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.114 4.114 24 C 0.125 3.875 25 C -0.192 4.192 26 C -0.219 4.219 27 H 0.259 0.741 28 H 0.121 0.879 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 0.578 -11.850 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.183 4.183 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.259 5.259 10 C 0.159 3.841 11 N -0.349 5.349 12 C 0.301 3.699 13 O -0.413 6.413 14 C -0.225 4.225 15 C 0.032 3.968 16 H 0.105 0.895 17 C -0.122 4.122 18 C -0.067 4.067 19 C -0.135 4.135 20 C -0.140 4.140 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.132 4.132 24 C 0.016 3.984 25 C -0.231 4.231 26 C -0.259 4.259 27 H 0.069 0.931 28 H 0.138 0.862 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.427 0.258 -11.303 12.541 hybrid contribution 0.638 1.034 0.068 1.217 sum 6.066 1.292 -11.235 12.833 Atomic orbital electron populations 1.70012 1.05417 1.26783 1.50768 1.25167 0.95053 0.98792 0.99238 0.86508 0.79340 0.83182 0.78746 1.20387 1.21398 1.20402 1.18949 0.93607 0.84918 1.41278 0.91835 1.43934 1.47754 1.02604 1.31598 1.21194 0.87107 1.01087 0.74667 1.52035 1.55662 1.06316 1.20865 1.21313 0.78239 0.84694 0.85702 1.90641 1.56742 1.22255 1.71710 1.23597 1.03267 0.95974 0.99633 1.21719 0.93831 0.94294 0.86943 0.89496 1.20826 0.96116 1.00225 0.95009 1.19958 0.95812 0.94552 0.96366 1.21085 0.97199 0.99919 0.95270 1.21091 1.00111 0.95450 0.97310 1.21069 0.98036 0.95886 1.00007 1.21121 0.97345 0.99783 0.95553 1.21160 1.00133 0.94883 0.97043 1.21156 0.91014 0.90483 0.95717 1.23063 1.06812 1.02036 0.91144 1.23266 1.00926 0.98960 1.02778 0.93051 0.86200 0.92936 0.87749 0.87941 0.88277 0.90629 0.86207 0.86467 0.86616 0.86413 0.85940 0.89359 0.88327 0.90704 0.90886 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.20 11.45 55.49 0.64 -22.56 16 2 C 0.02 0.45 4.90 -17.43 -0.09 0.37 16 3 Si 0.89 19.80 29.60 -169.99 -5.03 14.77 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.26 -6.36 7.94 -15.06 -0.12 -6.48 16 8 H 0.06 1.61 7.18 -52.49 -0.38 1.24 16 9 N -0.54 -12.67 3.03 -169.35 -0.51 -13.18 16 10 C 0.36 8.11 6.81 -63.75 -0.43 7.68 16 11 N -0.61 -11.70 3.30 -186.48 -0.62 -12.32 16 12 C 0.52 9.90 9.39 -16.92 -0.16 9.74 16 13 O -0.54 -12.15 18.03 5.55 0.10 -12.05 16 14 C -0.18 -2.62 7.89 -28.57 -0.23 -2.85 16 15 C 0.14 2.14 4.30 -73.84 -0.32 1.82 16 16 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.08 -1.33 5.35 -27.88 -0.15 -1.47 16 18 C -0.07 -0.92 5.13 -104.62 -0.54 -1.46 16 19 C -0.12 -1.43 9.68 -39.58 -0.38 -1.81 16 20 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 21 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 22 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 23 C -0.11 -1.56 9.72 -39.59 -0.38 -1.94 16 24 C 0.13 2.76 6.64 -67.93 -0.45 2.31 16 25 C -0.19 -3.90 9.78 -26.73 -0.26 -4.16 16 26 C -0.22 -4.40 10.19 -26.73 -0.27 -4.67 16 27 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 28 H 0.12 2.86 5.58 -51.93 -0.29 2.57 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.10 1.35 7.89 -51.93 -0.41 0.94 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.89 7.87 -51.93 -0.41 1.48 16 33 H 0.08 1.23 7.85 -51.93 -0.41 0.82 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 40 H 0.10 2.15 6.80 -51.93 -0.35 1.80 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -28.07 363.36 -11.38 -39.45 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.45 Total: 8.76 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -4.97 Total: -8.33 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.49 Total: -48.06 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.10 Total: -12.05 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.07 -11.38 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348469684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.682 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds