Wall clock time and date at job start Fri Apr 10 2020 20:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00001 * 2 1 4 4 H 1.48495 * 109.46889 * 244.99103 * 3 2 1 5 5 H 1.48502 * 109.47105 * 4.98912 * 3 2 1 6 6 H 1.48500 * 109.46913 * 124.98798 * 3 2 1 7 7 C 1.38808 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99824 * 199.57326 * 7 2 1 9 9 N 1.36939 * 120.00159 * 19.58375 * 7 2 1 10 10 C 1.46497 * 120.00130 * 36.56211 * 9 7 2 11 11 N 1.46504 * 109.46964 * 101.05105 * 10 9 7 12 12 C 1.33836 * 133.17513 * 83.89528 * 11 10 9 13 13 O 1.21286 * 133.24112 * 0.04074 * 12 11 10 14 14 C 1.49981 * 93.51668 * 180.29000 * 12 11 10 15 15 C 1.45716 * 133.17827 * 263.94386 * 11 10 9 16 16 H 1.09005 * 113.47287 * 294.79592 * 15 11 10 17 17 C 1.52995 * 113.47165 * 65.19127 * 15 11 10 18 18 C 1.50703 * 109.47136 * 182.27039 * 17 15 11 19 19 C 1.38236 * 119.99761 * 264.20376 * 18 17 15 20 20 C 1.38238 * 119.99670 * 179.74685 * 19 18 17 21 21 C 1.38236 * 120.00045 * 0.52795 * 20 19 18 22 22 C 1.38236 * 119.99729 * 359.74780 * 21 20 19 23 23 C 1.38229 * 120.00359 * 359.97438 * 22 21 20 24 24 C 1.46504 * 119.99951 * 216.56662 * 9 7 2 25 25 C 1.53002 * 117.49700 * 10.76299 * 24 9 7 26 26 C 1.52998 * 117.49828 * 302.13854 * 24 9 7 27 27 H 0.97005 * 120.00013 * 4.87717 * 1 2 3 28 28 H 1.08998 * 109.47122 * 341.05682 * 10 9 7 29 29 H 1.08998 * 109.47346 * 221.04912 * 10 9 7 30 30 H 1.08998 * 113.96414 * 113.72646 * 14 12 11 31 31 H 1.08994 * 113.96777 * 245.76219 * 14 12 11 32 32 H 1.09003 * 109.47501 * 302.26987 * 17 15 11 33 33 H 1.09004 * 109.47363 * 62.26863 * 17 15 11 34 34 H 1.07994 * 120.00366 * 359.97438 * 19 18 17 35 35 H 1.08004 * 119.99894 * 180.29807 * 20 19 18 36 36 H 1.07996 * 120.00051 * 179.77211 * 21 20 19 37 37 H 1.08002 * 119.99404 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.00222 * 179.97438 * 23 22 21 39 39 H 1.08998 * 115.54859 * 156.46754 * 24 9 7 40 40 H 1.09000 * 117.49799 * 359.97438 * 25 24 9 41 41 H 1.08996 * 117.49954 * 145.02053 * 25 24 9 42 42 H 1.08996 * 117.50307 * 214.98020 * 26 24 9 43 43 H 1.08999 * 117.49915 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.0103 1.7504 -1.2688 5 1 1.2898 2.7438 0.1218 6 1 3.1930 1.6450 1.1471 7 6 2.0102 -1.2021 -0.0005 8 1 3.0434 -1.2293 0.3128 9 7 1.3849 -2.3536 -0.3986 10 6 0.4129 -2.3182 -1.4940 11 7 1.0459 -2.7998 -2.7243 12 6 1.2566 -4.0217 -3.2281 13 8 0.9939 -5.1388 -2.8357 14 6 1.9436 -3.4984 -4.4543 15 6 1.6789 -2.1250 -3.8500 16 1 0.9898 -1.5141 -4.4333 17 6 2.9577 -1.3756 -3.4706 18 6 3.5044 -0.6685 -4.6840 19 6 4.4920 -1.2653 -5.4452 20 6 4.9897 -0.6190 -6.5612 21 6 4.5077 0.6288 -6.9097 22 6 3.5241 1.2280 -6.1451 23 6 3.0223 0.5793 -5.0325 24 6 1.6880 -3.6208 0.2712 25 6 2.5103 -3.5597 1.5600 26 6 3.1447 -4.0887 0.2721 27 1 -0.4850 0.8370 -0.0714 28 1 0.0670 -1.2949 -1.6399 29 1 -0.4354 -2.9569 -1.2478 30 1 3.0002 -3.7590 -4.5151 31 1 1.4007 -3.6869 -5.3804 32 1 2.7334 -0.6442 -2.6941 33 1 3.6976 -2.0846 -3.0991 34 1 4.8720 -2.2380 -5.1701 35 1 5.7579 -1.0873 -7.1587 36 1 4.8992 1.1354 -7.7794 37 1 3.1478 2.2031 -6.4172 38 1 2.2542 1.0476 -4.4350 39 1 0.9139 -4.3852 0.2035 40 1 2.8261 -2.5767 1.9093 41 1 2.2773 -4.2839 2.3405 42 1 3.3291 -5.1609 0.2053 43 1 3.8776 -3.4534 -0.2253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348469684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:27 Heat of formation + Delta-G solvation = 55.807663 kcal Electronic energy + Delta-G solvation = -24984.577057 eV Core-core repulsion = 21610.645098 eV Total energy + Delta-G solvation = -3373.931959 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99835 -39.92989 -38.73039 -37.58498 -35.41583 -33.84540 -32.70304 -31.69283 -30.21126 -28.38649 -26.83154 -24.87574 -23.87285 -23.31189 -23.04340 -21.77815 -21.74545 -19.48393 -18.54308 -17.91996 -17.56066 -17.33238 -16.91139 -16.78031 -16.29407 -15.87200 -15.79921 -15.63628 -14.80211 -14.35599 -14.29304 -14.10241 -13.77837 -13.66932 -13.52364 -13.29966 -13.14936 -12.79769 -12.73809 -12.51324 -12.48531 -12.26884 -12.05079 -12.01016 -11.78889 -11.67563 -11.48842 -11.09159 -10.81907 -10.46118 -9.85750 -9.73380 -9.40927 -8.67650 -7.96485 -5.56941 0.52232 0.58601 1.42375 1.46494 1.51798 1.66555 2.32272 2.46052 2.96462 3.10329 3.18875 3.39260 3.44865 3.74278 3.94003 4.08380 4.16052 4.19148 4.25645 4.32584 4.37786 4.39167 4.46883 4.50723 4.62320 4.73686 4.78031 4.84608 4.90883 4.94859 5.00960 5.07415 5.20215 5.24500 5.27909 5.37386 5.44243 5.60807 5.66199 5.70286 5.83861 5.91797 6.03387 6.21427 6.36762 7.02647 7.42972 7.66899 8.24395 9.03802 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.006499 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.658743 B = 4307.097747 C = 5730.364694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.018 4.018 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.054 0.946 9 N -0.553 5.553 10 C 0.376 3.624 11 N -0.620 5.620 12 C 0.502 3.498 13 O -0.577 6.577 14 C -0.152 4.152 15 C 0.137 3.863 16 H 0.100 0.900 17 C -0.069 4.069 18 C -0.082 4.082 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.135 4.135 24 C 0.099 3.901 25 C -0.181 4.181 26 C -0.198 4.198 27 H 0.257 0.743 28 H 0.103 0.897 29 H 0.033 0.967 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.970 0.604 -14.237 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.216 4.216 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.383 4.383 8 H 0.072 0.928 9 N -0.272 5.272 10 C 0.170 3.830 11 N -0.357 5.357 12 C 0.289 3.711 13 O -0.457 6.457 14 C -0.191 4.191 15 C 0.033 3.967 16 H 0.118 0.882 17 C -0.107 4.107 18 C -0.082 4.082 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.010 4.010 25 C -0.219 4.219 26 C -0.239 4.239 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.051 0.949 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.542 0.289 -13.720 15.659 hybrid contribution 0.002 1.002 0.774 1.266 sum 7.544 1.291 -12.946 15.039 Atomic orbital electron populations 1.70115 1.06502 1.27076 1.52262 1.25689 0.95528 1.00967 0.99419 0.85675 0.78123 0.80057 0.78705 1.19620 1.21764 1.20608 1.18935 0.93065 0.85577 1.40684 0.92801 1.43986 1.47990 1.02745 1.32480 1.20724 0.86829 0.99566 0.75919 1.51941 1.55668 1.07470 1.20644 1.22198 0.77897 0.83806 0.87204 1.90608 1.58301 1.23688 1.73116 1.23520 1.04311 0.92973 0.98329 1.21940 0.93803 0.95389 0.85526 0.88248 1.20566 0.95915 0.99077 0.95124 1.19787 0.97269 0.94948 0.96214 1.21257 0.96527 1.00596 0.95445 1.21449 1.00133 0.95363 0.96781 1.21454 0.97017 0.95863 1.00343 1.21359 0.97539 1.00493 0.94932 1.21183 1.00690 0.95312 0.98102 1.21253 0.92013 0.90133 0.97567 1.23050 1.05626 1.01877 0.91377 1.23180 0.98924 0.99747 1.02015 0.93363 0.87995 0.94878 0.85490 0.84513 0.92143 0.91376 0.84866 0.83627 0.83802 0.84765 0.87410 0.90204 0.89987 0.88204 0.89045 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.52 11.45 21.65 0.25 -49.27 16 2 C -0.02 -0.92 4.90 84.86 0.42 -0.51 16 3 Si 0.95 41.64 29.60 68.60 2.03 43.67 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.25 -12.83 7.94 84.03 0.67 -12.17 16 8 H 0.05 2.81 7.18 -2.91 -0.02 2.79 16 9 N -0.55 -26.77 3.03 -689.70 -2.09 -28.86 16 10 C 0.38 17.50 6.81 170.96 1.16 18.67 16 11 N -0.62 -24.18 3.30 -862.82 -2.85 -27.03 16 12 C 0.50 19.07 9.39 84.23 0.79 19.86 16 13 O -0.58 -26.30 18.03 -3.05 -0.05 -26.35 16 14 C -0.15 -3.94 7.89 29.42 0.23 -3.70 16 15 C 0.14 4.18 4.30 41.58 0.18 4.36 16 16 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 17 C -0.07 -2.16 5.35 29.85 0.16 -2.00 16 18 C -0.08 -2.16 5.13 -19.86 -0.10 -2.26 16 19 C -0.12 -2.60 9.68 22.27 0.22 -2.38 16 20 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 21 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 22 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 23 C -0.13 -3.57 9.72 22.27 0.22 -3.35 16 24 C 0.10 4.44 6.64 44.99 0.30 4.74 16 25 C -0.18 -7.29 9.78 30.60 0.30 -6.99 16 26 C -0.20 -7.87 10.19 30.60 0.31 -7.56 16 27 H 0.26 13.47 8.32 -92.70 -0.77 12.69 16 28 H 0.10 5.13 5.58 -2.39 -0.01 5.11 16 29 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.13 2.82 7.89 -2.39 -0.02 2.80 16 31 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.06 2.38 7.87 -2.39 -0.02 2.36 16 33 H 0.07 2.19 7.85 -2.39 -0.02 2.17 16 34 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.11 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.08 3.60 6.80 -2.39 -0.02 3.58 16 41 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 43 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -62.67 363.36 3.80 -58.87 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.99 Total: 28.77 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.52 Total: 0.21 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -4.69 Total: -105.16 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -62.67 3.80 -58.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348469684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.678 kcal (2) G-P(sol) polarization free energy of solvation -62.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds