Wall clock time and date at job start Fri Apr 10 2020 20:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00339 * 2 1 4 4 H 1.48496 * 109.47211 * 240.00287 * 3 2 1 5 5 H 1.48506 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47355 * 119.99970 * 3 2 1 7 7 C 1.38813 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99376 * 200.85624 * 7 2 1 9 9 N 1.36936 * 120.00455 * 20.85903 * 7 2 1 10 10 C 1.46490 * 120.00029 * 37.03506 * 9 7 2 11 11 N 1.46503 * 109.47201 * 90.00292 * 10 9 7 12 12 C 1.33834 * 133.17770 * 85.46336 * 11 10 9 13 13 O 1.21286 * 133.24101 * 359.97438 * 12 11 10 14 14 C 1.49981 * 93.51605 * 180.22725 * 12 11 10 15 15 C 1.45720 * 133.17541 * 265.42417 * 11 10 9 16 16 H 1.09000 * 113.47325 * 65.26010 * 15 11 10 17 17 C 1.53003 * 113.47550 * 294.86218 * 15 11 10 18 18 C 1.50693 * 109.47465 * 176.89334 * 17 15 11 19 19 C 1.38236 * 119.99931 * 274.82337 * 18 17 15 20 20 C 1.38243 * 119.99705 * 179.78459 * 19 18 17 21 21 C 1.38232 * 119.99982 * 0.46685 * 20 19 18 22 22 C 1.38235 * 120.00061 * 359.76930 * 21 20 19 23 23 C 1.38234 * 120.00078 * 95.09810 * 18 17 15 24 24 C 1.46503 * 119.99970 * 217.03831 * 9 7 2 25 25 C 1.53006 * 117.49774 * 13.84217 * 24 9 7 26 26 C 1.52999 * 117.49695 * 305.22021 * 24 9 7 27 27 H 0.97004 * 120.00088 * 4.98135 * 1 2 3 28 28 H 1.09006 * 109.47574 * 330.00365 * 10 9 7 29 29 H 1.08996 * 109.47421 * 210.00095 * 10 9 7 30 30 H 1.09001 * 113.96716 * 113.73249 * 14 12 11 31 31 H 1.09005 * 113.96552 * 245.76188 * 14 12 11 32 32 H 1.09002 * 109.47024 * 296.90058 * 17 15 11 33 33 H 1.09007 * 109.46594 * 56.88881 * 17 15 11 34 34 H 1.08002 * 120.00412 * 0.02562 * 19 18 17 35 35 H 1.08000 * 119.99769 * 180.24862 * 20 19 18 36 36 H 1.07998 * 119.99664 * 179.78646 * 21 20 19 37 37 H 1.08001 * 120.00029 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00008 * 359.97390 * 23 18 17 39 39 H 1.09000 * 115.54839 * 159.54833 * 24 9 7 40 40 H 1.09000 * 117.49788 * 0.02562 * 25 24 9 41 41 H 1.08998 * 117.49387 * 145.02100 * 25 24 9 42 42 H 1.09001 * 117.49470 * 214.97469 * 26 24 9 43 43 H 1.08996 * 117.50218 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0371 -1.2330 0.3325 9 7 1.3928 -2.3491 -0.4233 10 6 0.4499 -2.3031 -1.5435 11 7 1.1724 -2.5208 -2.7992 12 6 1.5452 -3.6220 -3.4622 13 8 1.4104 -4.8078 -3.2458 14 6 2.1971 -2.8470 -4.5685 15 6 1.7493 -1.6181 -3.7870 16 1 2.5803 -1.0270 -3.4020 17 6 0.7078 -0.7686 -4.5181 18 6 1.4043 0.1810 -5.4583 19 6 1.8703 1.3965 -4.9932 20 6 2.5132 2.2657 -5.8548 21 6 2.6815 1.9235 -7.1835 22 6 2.2112 0.7101 -7.6496 23 6 1.5723 -0.1610 -6.7871 24 6 1.6752 -3.6220 0.2447 25 6 2.4003 -3.5677 1.5910 26 6 3.1382 -4.0584 0.3438 27 1 -0.4850 0.8369 -0.0729 28 1 -0.0371 -1.3282 -1.5689 29 1 -0.3023 -3.0818 -1.4175 30 1 3.2790 -2.9704 -4.6177 31 1 1.7075 -2.9593 -5.5359 32 1 0.0420 -1.4188 -5.0855 33 1 0.1277 -0.2000 -3.7911 34 1 1.7356 1.6655 -3.9560 35 1 2.8808 3.2137 -5.4906 36 1 3.1807 2.6041 -7.8572 37 1 2.3424 0.4429 -8.6878 38 1 1.2046 -1.1089 -7.1513 39 1 0.9256 -4.4013 0.1075 40 1 2.6668 -2.5849 1.9798 41 1 2.1276 -4.3114 2.3397 42 1 3.3511 -5.1251 0.2721 43 1 3.8907 -3.3984 -0.0877 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348469686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:30 Heat of formation + Delta-G solvation = 67.553622 kcal Electronic energy + Delta-G solvation = -24739.533549 eV Core-core repulsion = 21366.110933 eV Total energy + Delta-G solvation = -3373.422616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56273 -38.98654 -36.98863 -36.02546 -33.64269 -32.65774 -30.98911 -30.82268 -28.62516 -27.34578 -25.07033 -23.15097 -22.70526 -22.39043 -21.37195 -20.72736 -19.97165 -17.95494 -16.88323 -16.59470 -16.19585 -15.95528 -15.54188 -15.10296 -14.95014 -14.83182 -14.43781 -13.86543 -13.37950 -13.20299 -13.04559 -12.87783 -12.60132 -12.39225 -12.02413 -11.85566 -11.40234 -11.37896 -11.12171 -11.01229 -10.90308 -10.83757 -10.65874 -10.61794 -10.52806 -10.17706 -9.75895 -9.39634 -9.21825 -8.86541 -8.70152 -8.58246 -8.05038 -6.80495 -6.02320 -3.62653 1.40373 1.45862 3.18020 3.23073 3.29510 3.31697 3.75797 3.93941 4.29935 4.55590 4.87784 4.91038 4.93491 5.03506 5.06688 5.17675 5.20850 5.26448 5.31437 5.48717 5.57032 5.64424 5.83871 5.90462 5.92482 5.97778 6.08877 6.11001 6.17354 6.20960 6.25961 6.47717 6.49294 6.51309 6.56672 6.61161 6.75534 6.92077 6.95463 7.07367 7.13514 7.54455 7.58197 7.64673 8.28017 8.94023 9.01216 9.54903 10.12720 10.97174 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.005926 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.112786 B = 4723.928218 C = 6267.364998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.018 3.982 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.063 0.937 9 N -0.542 5.542 10 C 0.357 3.643 11 N -0.606 5.606 12 C 0.515 3.485 13 O -0.538 6.538 14 C -0.184 4.184 15 C 0.137 3.863 16 H 0.092 0.908 17 C -0.084 4.084 18 C -0.069 4.069 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.116 4.116 24 C 0.123 3.877 25 C -0.192 4.192 26 C -0.219 4.219 27 H 0.259 0.741 28 H 0.124 0.876 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 2.564 -12.377 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.182 4.182 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.081 0.919 9 N -0.259 5.259 10 C 0.152 3.848 11 N -0.344 5.344 12 C 0.300 3.700 13 O -0.416 6.416 14 C -0.224 4.224 15 C 0.032 3.968 16 H 0.110 0.890 17 C -0.122 4.122 18 C -0.069 4.069 19 C -0.129 4.129 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.134 4.134 24 C 0.014 3.986 25 C -0.231 4.231 26 C -0.259 4.259 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.189 2.148 -11.911 12.299 hybrid contribution 0.680 1.034 0.113 1.243 sum 2.869 3.182 -11.798 12.552 Atomic orbital electron populations 1.69988 1.05417 1.26708 1.50636 1.25132 0.95018 0.98758 0.99314 0.86499 0.79363 0.83115 0.78726 1.20466 1.21300 1.20497 1.18954 0.94111 0.85289 1.40482 0.91949 1.43959 1.49633 1.02493 1.29796 1.21294 0.86878 1.03022 0.73636 1.51899 1.54595 1.05810 1.22086 1.21333 0.78244 0.85778 0.84653 1.90638 1.60028 1.15053 1.75836 1.23596 1.03220 0.95661 0.99942 1.21719 0.95112 0.92688 0.87286 0.88956 1.20800 0.97242 0.96871 0.97316 1.19804 0.98144 0.94860 0.94127 1.21201 0.97859 0.93805 1.00079 1.21146 0.99201 0.99618 0.93747 1.21092 1.00803 0.97060 0.95771 1.21087 0.98978 0.94510 0.99452 1.21056 0.99723 0.99528 0.93093 1.21198 0.91784 0.90323 0.95282 1.23075 1.06590 1.02077 0.91348 1.23265 0.99609 0.99240 1.03826 0.93108 0.85887 0.92880 0.87757 0.87922 0.90638 0.89488 0.85814 0.86322 0.86531 0.86394 0.86142 0.89252 0.88323 0.90666 0.90805 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.09 11.39 55.49 0.63 -22.45 16 2 C 0.02 0.46 4.97 -17.43 -0.09 0.37 16 3 Si 0.89 19.88 29.61 -169.99 -5.03 14.84 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.57 8.08 -15.06 -0.12 -6.69 16 8 H 0.06 1.63 7.18 -52.49 -0.38 1.26 16 9 N -0.54 -12.99 3.03 -169.35 -0.51 -13.50 16 10 C 0.36 8.00 6.97 -63.76 -0.44 7.56 16 11 N -0.61 -11.90 3.30 -186.48 -0.62 -12.51 16 12 C 0.51 10.08 9.39 -16.91 -0.16 9.92 16 13 O -0.54 -12.37 18.03 5.55 0.10 -12.27 16 14 C -0.18 -2.69 7.91 -28.57 -0.23 -2.92 16 15 C 0.14 2.23 4.27 -73.84 -0.32 1.91 16 16 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 17 C -0.08 -1.19 5.38 -27.89 -0.15 -1.34 16 18 C -0.07 -0.90 5.13 -104.63 -0.54 -1.44 16 19 C -0.11 -1.53 9.72 -39.58 -0.38 -1.91 16 20 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 21 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.32 9.68 -39.58 -0.38 -1.70 16 24 C 0.12 2.75 6.61 -67.93 -0.45 2.30 16 25 C -0.19 -3.94 9.80 -26.73 -0.26 -4.20 16 26 C -0.22 -4.50 10.09 -26.73 -0.27 -4.76 16 27 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 28 H 0.12 2.94 5.45 -51.93 -0.28 2.65 16 29 H 0.05 1.20 8.04 -51.93 -0.42 0.78 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.10 1.24 7.92 -51.93 -0.41 0.83 16 32 H 0.07 0.96 7.87 -51.93 -0.41 0.56 16 33 H 0.09 1.37 8.12 -51.93 -0.42 0.94 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.09 1.96 8.10 -51.93 -0.42 1.54 16 40 H 0.10 2.19 6.93 -51.93 -0.36 1.83 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.79 8.02 -51.93 -0.42 1.37 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -28.70 363.62 -11.39 -40.09 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.46 Total: 8.53 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -4.98 Total: -8.20 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.50 Total: -48.47 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.10 Total: -12.27 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.70 -11.39 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348469686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.639 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds