Wall clock time and date at job start Fri Apr 10 2020 20:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00339 * 2 1 4 4 H 1.48496 * 109.47211 * 240.00287 * 3 2 1 5 5 H 1.48506 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47355 * 119.99970 * 3 2 1 7 7 C 1.38813 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99376 * 200.85624 * 7 2 1 9 9 N 1.36936 * 120.00455 * 20.85903 * 7 2 1 10 10 C 1.46490 * 120.00029 * 37.03506 * 9 7 2 11 11 N 1.46503 * 109.47201 * 90.00292 * 10 9 7 12 12 C 1.33834 * 133.17770 * 85.46336 * 11 10 9 13 13 O 1.21286 * 133.24101 * 359.97438 * 12 11 10 14 14 C 1.49981 * 93.51605 * 180.22725 * 12 11 10 15 15 C 1.45720 * 133.17541 * 265.42417 * 11 10 9 16 16 H 1.09000 * 113.47325 * 65.26010 * 15 11 10 17 17 C 1.53003 * 113.47550 * 294.86218 * 15 11 10 18 18 C 1.50693 * 109.47465 * 176.89334 * 17 15 11 19 19 C 1.38236 * 119.99931 * 274.82337 * 18 17 15 20 20 C 1.38243 * 119.99705 * 179.78459 * 19 18 17 21 21 C 1.38232 * 119.99982 * 0.46685 * 20 19 18 22 22 C 1.38235 * 120.00061 * 359.76930 * 21 20 19 23 23 C 1.38234 * 120.00078 * 95.09810 * 18 17 15 24 24 C 1.46503 * 119.99970 * 217.03831 * 9 7 2 25 25 C 1.53006 * 117.49774 * 13.84217 * 24 9 7 26 26 C 1.52999 * 117.49695 * 305.22021 * 24 9 7 27 27 H 0.97004 * 120.00088 * 4.98135 * 1 2 3 28 28 H 1.09006 * 109.47574 * 330.00365 * 10 9 7 29 29 H 1.08996 * 109.47421 * 210.00095 * 10 9 7 30 30 H 1.09001 * 113.96716 * 113.73249 * 14 12 11 31 31 H 1.09005 * 113.96552 * 245.76188 * 14 12 11 32 32 H 1.09002 * 109.47024 * 296.90058 * 17 15 11 33 33 H 1.09007 * 109.46594 * 56.88881 * 17 15 11 34 34 H 1.08002 * 120.00412 * 0.02562 * 19 18 17 35 35 H 1.08000 * 119.99769 * 180.24862 * 20 19 18 36 36 H 1.07998 * 119.99664 * 179.78646 * 21 20 19 37 37 H 1.08001 * 120.00029 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00008 * 359.97390 * 23 18 17 39 39 H 1.09000 * 115.54839 * 159.54833 * 24 9 7 40 40 H 1.09000 * 117.49788 * 0.02562 * 25 24 9 41 41 H 1.08998 * 117.49387 * 145.02100 * 25 24 9 42 42 H 1.09001 * 117.49470 * 214.97469 * 26 24 9 43 43 H 1.08996 * 117.50218 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0371 -1.2330 0.3325 9 7 1.3928 -2.3491 -0.4233 10 6 0.4499 -2.3031 -1.5435 11 7 1.1724 -2.5208 -2.7992 12 6 1.5452 -3.6220 -3.4622 13 8 1.4104 -4.8078 -3.2458 14 6 2.1971 -2.8470 -4.5685 15 6 1.7493 -1.6181 -3.7870 16 1 2.5803 -1.0270 -3.4020 17 6 0.7078 -0.7686 -4.5181 18 6 1.4043 0.1810 -5.4583 19 6 1.8703 1.3965 -4.9932 20 6 2.5132 2.2657 -5.8548 21 6 2.6815 1.9235 -7.1835 22 6 2.2112 0.7101 -7.6496 23 6 1.5723 -0.1610 -6.7871 24 6 1.6752 -3.6220 0.2447 25 6 2.4003 -3.5677 1.5910 26 6 3.1382 -4.0584 0.3438 27 1 -0.4850 0.8369 -0.0729 28 1 -0.0371 -1.3282 -1.5689 29 1 -0.3023 -3.0818 -1.4175 30 1 3.2790 -2.9704 -4.6177 31 1 1.7075 -2.9593 -5.5359 32 1 0.0420 -1.4188 -5.0855 33 1 0.1277 -0.2000 -3.7911 34 1 1.7356 1.6655 -3.9560 35 1 2.8808 3.2137 -5.4906 36 1 3.1807 2.6041 -7.8572 37 1 2.3424 0.4429 -8.6878 38 1 1.2046 -1.1089 -7.1513 39 1 0.9256 -4.4013 0.1075 40 1 2.6668 -2.5849 1.9798 41 1 2.1276 -4.3114 2.3397 42 1 3.3511 -5.1251 0.2721 43 1 3.8907 -3.3984 -0.0877 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348469686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:30 Heat of formation + Delta-G solvation = 54.599954 kcal Electronic energy + Delta-G solvation = -24740.095262 eV Core-core repulsion = 21366.110933 eV Total energy + Delta-G solvation = -3373.984329 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99960 -39.95081 -38.75460 -37.59721 -35.43080 -33.84111 -32.73179 -31.70653 -30.21342 -28.48312 -26.87721 -24.84006 -23.87901 -23.33523 -23.05465 -21.85364 -21.73560 -19.53604 -18.34124 -18.03972 -17.61119 -17.41790 -17.08184 -16.70324 -16.28141 -15.92460 -15.81755 -15.63046 -14.81433 -14.37992 -14.30287 -14.12546 -13.85583 -13.74937 -13.48405 -13.23541 -13.16084 -12.86698 -12.71919 -12.53633 -12.45629 -12.28716 -12.08385 -12.02195 -11.83881 -11.70501 -11.55313 -11.10262 -10.83486 -10.49101 -9.86165 -9.74872 -9.43693 -8.69632 -7.94947 -5.60414 0.49773 0.57030 1.40922 1.44713 1.51015 1.65425 2.31335 2.45671 2.95008 3.07558 3.17134 3.38758 3.44203 3.72388 3.92969 4.06288 4.09671 4.17221 4.23477 4.30989 4.36089 4.38935 4.43274 4.47953 4.59617 4.70939 4.75448 4.83605 4.85597 4.93019 4.93856 5.12294 5.15378 5.21143 5.25360 5.29925 5.43576 5.58901 5.64595 5.69219 5.80209 5.91640 6.02154 6.19811 6.35809 7.01082 7.42868 7.65148 8.21453 9.01210 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.005926 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.112786 B = 4723.928218 C = 6267.364998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.016 4.016 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.263 4.263 8 H 0.050 0.950 9 N -0.557 5.557 10 C 0.365 3.635 11 N -0.616 5.616 12 C 0.502 3.498 13 O -0.578 6.578 14 C -0.151 4.151 15 C 0.138 3.862 16 H 0.074 0.926 17 C -0.072 4.072 18 C -0.081 4.081 19 C -0.137 4.137 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.115 4.115 24 C 0.096 3.904 25 C -0.179 4.179 26 C -0.203 4.203 27 H 0.258 0.742 28 H 0.107 0.893 29 H 0.042 0.958 30 H 0.124 0.876 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 2.668 -14.975 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.214 4.214 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.393 4.393 8 H 0.068 0.932 9 N -0.275 5.275 10 C 0.159 3.841 11 N -0.353 5.353 12 C 0.289 3.711 13 O -0.458 6.458 14 C -0.191 4.191 15 C 0.034 3.966 16 H 0.092 0.908 17 C -0.110 4.110 18 C -0.082 4.082 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.133 4.133 24 C -0.013 4.013 25 C -0.218 4.218 26 C -0.243 4.243 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.060 0.940 30 H 0.142 0.858 31 H 0.159 0.841 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.420 2.264 -14.533 15.101 hybrid contribution 0.300 0.992 0.901 1.374 sum 3.721 3.256 -13.632 14.501 Atomic orbital electron populations 1.70081 1.06417 1.27109 1.51553 1.25673 0.95565 1.00933 0.99263 0.85671 0.78265 0.79978 0.78610 1.19703 1.21306 1.20739 1.18944 0.93591 0.86191 1.40572 0.93195 1.44052 1.49981 1.02697 1.30762 1.20915 0.86870 1.01587 0.74772 1.51833 1.54375 1.07358 1.21712 1.22185 0.77893 0.85165 0.85865 1.90606 1.61464 1.16664 1.77078 1.23527 1.04233 0.91783 0.99562 1.21834 0.95051 0.93124 0.86624 0.90761 1.20641 0.96630 0.96771 0.96975 1.19705 0.99076 0.94470 0.94932 1.21180 0.99721 0.95114 0.99501 1.21336 0.99153 0.99829 0.94465 1.21451 1.00076 0.97704 0.95332 1.21486 0.97576 0.93881 1.00778 1.21314 0.99255 1.00682 0.92052 1.21370 0.92916 0.90025 0.96956 1.23049 1.05509 1.01873 0.91372 1.23188 0.97824 1.00054 1.03243 0.93292 0.87594 0.93988 0.85761 0.84102 0.88879 0.92127 0.88219 0.85376 0.83902 0.83323 0.83813 0.89304 0.90248 0.87869 0.88708 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.92 11.39 21.65 0.25 -48.68 16 2 C -0.02 -0.82 4.97 84.86 0.42 -0.40 16 3 Si 0.95 41.81 29.61 68.60 2.03 43.84 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.26 -13.74 8.08 84.03 0.68 -13.07 16 8 H 0.05 2.70 7.18 -2.91 -0.02 2.67 16 9 N -0.56 -27.53 3.03 -689.69 -2.09 -29.62 16 10 C 0.36 17.04 6.97 170.96 1.19 18.23 16 11 N -0.62 -24.55 3.30 -862.81 -2.85 -27.40 16 12 C 0.50 19.36 9.39 84.24 0.79 20.16 16 13 O -0.58 -26.53 18.03 -3.05 -0.05 -26.59 16 14 C -0.15 -4.04 7.91 29.42 0.23 -3.81 16 15 C 0.14 4.41 4.27 41.59 0.18 4.59 16 16 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.07 -2.00 5.38 29.85 0.16 -1.84 16 18 C -0.08 -2.03 5.13 -19.87 -0.10 -2.13 16 19 C -0.14 -3.75 9.72 22.27 0.22 -3.53 16 20 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 21 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 22 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 23 C -0.12 -2.22 9.68 22.27 0.22 -2.01 16 24 C 0.10 4.33 6.61 44.99 0.30 4.63 16 25 C -0.18 -7.31 9.80 30.60 0.30 -7.01 16 26 C -0.20 -8.25 10.09 30.60 0.31 -7.94 16 27 H 0.26 13.40 8.32 -92.71 -0.77 12.63 16 28 H 0.11 5.33 5.45 -2.38 -0.01 5.32 16 29 H 0.04 1.99 8.04 -2.39 -0.02 1.98 16 30 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.14 2.75 7.92 -2.38 -0.02 2.73 16 32 H 0.09 2.22 7.87 -2.39 -0.02 2.20 16 33 H 0.06 2.00 8.12 -2.38 -0.02 1.98 16 34 H 0.10 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.09 3.98 8.10 -2.39 -0.02 3.96 16 40 H 0.08 3.56 6.93 -2.39 -0.02 3.54 16 41 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 42 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 43 H 0.07 2.98 8.02 -2.39 -0.02 2.96 16 Total: -1.00 -63.98 363.62 3.84 -60.15 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.99 Total: 29.06 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.56 Total: -0.76 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.69 Total: -105.69 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -63.98 3.84 -60.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348469686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.745 kcal (2) G-P(sol) polarization free energy of solvation -63.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds