Wall clock time and date at job start Fri Apr 10 2020 20:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46890 * 109.47059 * 84.94094 * 3 2 1 5 5 C 1.46900 * 111.00284 * 66.04346 * 4 3 2 6 6 C 1.38580 * 110.99950 * 189.99296 * 4 3 2 7 7 N 1.31211 * 126.38367 * 297.28569 * 6 4 3 8 8 N 1.28509 * 110.10078 * 180.02562 * 7 6 4 9 9 C 1.31213 * 109.96670 * 0.02562 * 8 7 6 10 10 C 1.47988 * 126.47573 * 179.97438 * 9 8 7 11 11 C 1.41010 * 126.25662 * 165.00064 * 10 9 8 12 12 N 1.30634 * 108.08427 * 180.02562 * 11 10 9 13 13 N 1.39990 * 108.58949 * 0.02562 * 12 11 10 14 14 C 1.46503 * 125.87379 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47135 * 305.02216 * 14 13 12 16 16 H 1.08001 * 119.99569 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99951 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99901 * 0.27604 * 17 15 14 19 19 Si 1.86802 * 119.99896 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47267 * 59.99716 * 19 17 15 21 21 H 1.48500 * 109.46951 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46862 * 300.00047 * 19 17 15 23 23 C 1.34820 * 108.25623 * 0.26292 * 13 12 11 24 24 N 1.36647 * 126.37619 * 117.63441 * 6 4 3 25 25 C 1.46497 * 127.18486 * 359.97438 * 24 6 4 26 26 H 4.40883 * 5.52152 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47030 * 324.93633 * 3 2 1 28 28 H 1.09008 * 109.46420 * 204.93952 * 3 2 1 29 29 H 1.08997 * 109.47262 * 178.27429 * 5 4 3 30 30 H 1.08996 * 109.47133 * 298.27097 * 5 4 3 31 31 H 1.09004 * 109.47230 * 58.27459 * 5 4 3 32 32 H 1.07999 * 125.96011 * 359.97438 * 11 10 9 33 33 H 1.09001 * 109.47370 * 185.02226 * 14 13 12 34 34 H 1.09000 * 109.47186 * 65.02500 * 14 13 12 35 35 H 0.96996 * 120.00138 * 359.72617 * 18 17 15 36 36 H 1.08005 * 126.21295 * 179.74082 * 23 13 12 37 37 H 1.09004 * 109.46892 * 264.62090 * 25 24 6 38 38 H 1.09003 * 109.47463 * 24.61880 * 25 24 6 39 39 H 1.09003 * 109.47873 * 144.62304 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.1212 -1.3795 5 6 2.7857 1.0668 -2.1694 6 6 4.5026 -0.3481 -1.4031 7 7 5.4339 0.4629 -0.9597 8 7 6.5949 -0.0589 -1.1369 9 6 6.4753 -1.2355 -1.7051 10 6 7.5783 -2.1506 -2.0739 11 6 7.4539 -3.5155 -2.4056 12 7 8.6464 -3.9789 -2.6699 13 7 9.5724 -2.9399 -2.5191 14 6 11.0194 -3.0432 -2.7235 15 6 11.5702 -4.1524 -1.8649 16 1 10.9084 -4.7236 -1.2307 17 6 12.9187 -4.4388 -1.8898 18 7 13.7251 -3.7403 -2.6588 19 14 13.6012 -5.8142 -0.8260 20 1 12.9550 -7.0975 -1.2013 21 1 15.0678 -5.9196 -1.0341 22 1 13.3234 -5.5193 0.6026 23 6 8.9043 -1.8292 -2.1481 24 7 5.1320 -1.4553 -1.8983 25 6 4.5059 -2.6322 -2.5058 26 1 -1.0500 -0.0002 0.0000 27 1 3.0097 -0.8403 0.5904 28 1 3.0089 0.9328 0.4334 29 1 3.1865 0.9638 -3.1777 30 1 1.7012 1.1644 -2.2178 31 1 3.2097 1.9539 -1.6987 32 1 6.5335 -4.0797 -2.4350 33 1 11.4935 -2.1011 -2.4482 34 1 11.2237 -3.2598 -3.7721 35 1 13.3706 -3.0263 -3.2115 36 1 9.3381 -0.8603 -1.9489 37 1 4.3800 -3.4075 -1.7500 38 1 3.5316 -2.3575 -2.9102 39 1 5.1400 -3.0074 -3.3091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519187511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:34 Heat of formation + Delta-G solvation = 225.844923 kcal Electronic energy + Delta-G solvation = -22953.801835 eV Core-core repulsion = 19515.995653 eV Total energy + Delta-G solvation = -3437.806182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.82903 -40.64987 -38.05404 -35.01406 -34.16750 -33.36800 -31.85667 -31.02961 -28.62055 -28.21605 -27.66298 -26.78849 -25.13116 -23.57209 -22.35910 -21.16721 -20.21278 -19.91846 -18.53731 -17.64792 -17.14933 -16.57729 -16.27324 -16.02291 -15.19153 -15.08254 -14.61362 -14.44840 -13.91752 -13.66670 -13.54234 -13.42404 -13.04315 -12.85202 -12.58036 -12.41050 -12.31149 -11.92880 -11.57033 -11.27098 -11.04239 -10.83933 -10.73846 -10.53023 -10.25959 -10.20480 -10.14335 -9.67955 -9.41249 -9.13879 -8.74325 -8.61794 -7.71763 -6.66590 -4.41807 1.45723 1.94481 2.36569 2.48807 2.55258 2.70788 3.16233 3.34896 3.35840 3.47355 3.55256 3.60650 4.01967 4.34646 4.50640 4.59063 4.73633 4.94630 4.97609 5.00858 5.06413 5.11988 5.17775 5.20830 5.31849 5.40831 5.51655 5.55459 5.61490 5.78245 5.96491 6.21982 6.23383 6.40933 6.51125 6.56534 6.88960 7.10130 7.24235 7.45677 7.55238 8.18015 8.22330 8.50921 8.77635 9.26300 10.71520 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.035462 B = 0.002630 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.395033 B =10643.425805 C =10780.955728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.181 4.181 3 C 0.175 3.825 4 N -0.461 5.461 5 C 0.036 3.964 6 C 0.319 3.681 7 N -0.302 5.302 8 N -0.296 5.296 9 C 0.303 3.697 10 C -0.213 4.213 11 C 0.039 3.961 12 N -0.268 5.268 13 N -0.313 5.313 14 C 0.243 3.757 15 C -0.612 4.612 16 H 0.065 0.935 17 C 0.025 3.975 18 N -0.901 5.901 19 Si 1.077 2.923 20 H -0.284 1.284 21 H -0.279 1.279 22 H -0.285 1.285 23 C 0.113 3.887 24 N -0.467 5.467 25 C 0.077 3.923 26 H 0.219 0.781 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.176 0.824 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.268 0.732 36 H 0.180 0.820 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.690 5.946 0.866 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.049 3.951 4 N -0.186 5.186 5 C -0.112 4.112 6 C -0.037 4.037 7 N -0.146 5.146 8 N -0.137 5.137 9 C 0.038 3.962 10 C -0.229 4.229 11 C -0.149 4.149 12 N -0.089 5.089 13 N -0.090 5.090 14 C 0.126 3.874 15 C -0.650 4.650 16 H 0.083 0.917 17 C -0.180 4.180 18 N -0.536 5.536 19 Si 0.904 3.096 20 H -0.211 1.211 21 H -0.205 1.205 22 H -0.211 1.211 23 C -0.043 4.043 24 N -0.159 5.159 25 C -0.066 4.066 26 H 0.236 0.764 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.193 0.807 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.197 0.803 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.008 4.899 1.267 21.609 hybrid contribution -2.523 0.992 -0.441 2.746 sum -23.531 5.891 0.826 24.271 Atomic orbital electron populations 1.24902 0.95798 1.01218 0.98666 1.22604 0.93783 1.00341 1.01440 1.18984 0.85018 1.03423 0.87712 1.58470 1.05444 1.41232 1.13463 1.22454 1.01874 0.89322 0.97526 1.21898 0.90882 0.87264 1.03628 1.74459 0.95376 1.24722 1.20066 1.74404 1.15424 1.05841 1.18062 1.21901 0.81180 0.94297 0.98814 1.17190 0.89779 0.93072 1.22844 1.23855 0.97001 0.92565 1.01444 1.77362 0.97162 1.12373 1.22008 1.49257 1.09123 1.04772 1.45889 1.19927 0.68873 0.99882 0.98731 1.22049 0.96095 1.18803 1.28050 0.91690 1.25942 0.92940 1.01164 0.97969 1.70858 1.38017 1.20354 1.24363 0.83411 0.76246 0.74710 0.75271 1.21060 1.20455 1.21134 1.22562 0.91165 0.93678 0.96848 1.46106 1.06675 1.16765 1.46375 1.22150 0.99723 0.85577 0.99135 0.76380 0.88282 0.90279 0.90963 0.90077 0.93220 0.80720 0.93271 0.94187 0.92221 0.80275 0.90122 0.88666 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 19.25 29.55 0.57 -0.78 16 2 C -0.18 -1.61 12.47 -37.12 -0.46 -2.07 16 3 C 0.17 1.68 5.38 -6.62 -0.04 1.65 16 4 N -0.46 -4.90 4.73 -185.68 -0.88 -5.78 16 5 C 0.04 0.32 9.25 60.06 0.56 0.88 16 6 C 0.32 4.32 6.39 -318.61 -2.04 2.29 16 7 N -0.30 -4.95 12.17 30.35 0.37 -4.58 16 8 N -0.30 -5.31 12.21 32.60 0.40 -4.91 16 9 C 0.30 4.93 7.91 -153.83 -1.22 3.72 16 10 C -0.21 -3.65 6.05 -105.43 -0.64 -4.29 16 11 C 0.04 0.65 10.80 -17.01 -0.18 0.47 16 12 N -0.27 -5.62 12.36 30.83 0.38 -5.24 16 13 N -0.31 -6.75 3.66 -62.22 -0.23 -6.98 16 14 C 0.24 5.83 5.57 -5.19 -0.03 5.80 16 15 C -0.61 -16.56 9.23 -34.44 -0.32 -16.88 16 16 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 17 C 0.03 0.68 5.46 -17.82 -0.10 0.58 16 18 N -0.90 -25.58 13.65 55.43 0.76 -24.83 16 19 Si 1.08 24.33 29.90 -169.99 -5.08 19.24 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 23 C 0.11 2.10 11.40 -16.82 -0.19 1.91 16 24 N -0.47 -6.20 3.24 -121.98 -0.39 -6.59 16 25 C 0.08 0.69 9.82 59.85 0.59 1.28 16 26 H 0.22 0.80 7.80 -54.09 -0.42 0.38 16 27 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 28 H 0.08 0.77 8.11 -51.92 -0.42 0.34 16 29 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.08 0.61 7.34 -51.93 -0.38 0.23 16 31 H 0.05 0.48 8.13 -51.93 -0.42 0.05 16 32 H 0.18 2.17 6.27 -52.49 -0.33 1.84 16 33 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.04 0.99 8.01 -51.93 -0.42 0.58 16 35 H 0.27 7.40 7.22 -40.82 -0.29 7.10 16 36 H 0.18 2.95 8.06 -52.48 -0.42 2.53 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 39 H 0.09 0.77 6.55 -51.93 -0.34 0.43 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -32.77 347.86 -7.68 -40.45 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.75 Total: -0.58 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.50 Total: -5.45 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.41 Total: -58.90 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.77 -7.68 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519187511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 266.294 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 233.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 225.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds