Wall clock time and date at job start Fri Apr 10 2020 20:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46890 * 109.47059 * 84.94094 * 3 2 1 5 5 C 1.46900 * 111.00284 * 66.04346 * 4 3 2 6 6 C 1.38580 * 110.99950 * 189.99296 * 4 3 2 7 7 N 1.31211 * 126.38367 * 297.28569 * 6 4 3 8 8 N 1.28509 * 110.10078 * 180.02562 * 7 6 4 9 9 C 1.31213 * 109.96670 * 0.02562 * 8 7 6 10 10 C 1.47988 * 126.47573 * 179.97438 * 9 8 7 11 11 C 1.41010 * 126.25662 * 165.00064 * 10 9 8 12 12 N 1.30634 * 108.08427 * 180.02562 * 11 10 9 13 13 N 1.39990 * 108.58949 * 0.02562 * 12 11 10 14 14 C 1.46503 * 125.87379 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47135 * 305.02216 * 14 13 12 16 16 H 1.08001 * 119.99569 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99951 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99901 * 0.27604 * 17 15 14 19 19 Si 1.86802 * 119.99896 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47267 * 59.99716 * 19 17 15 21 21 H 1.48500 * 109.46951 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46862 * 300.00047 * 19 17 15 23 23 C 1.34820 * 108.25623 * 0.26292 * 13 12 11 24 24 N 1.36647 * 126.37619 * 117.63441 * 6 4 3 25 25 C 1.46497 * 127.18486 * 359.97438 * 24 6 4 26 26 H 4.40883 * 5.52152 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47030 * 324.93633 * 3 2 1 28 28 H 1.09008 * 109.46420 * 204.93952 * 3 2 1 29 29 H 1.08997 * 109.47262 * 178.27429 * 5 4 3 30 30 H 1.08996 * 109.47133 * 298.27097 * 5 4 3 31 31 H 1.09004 * 109.47230 * 58.27459 * 5 4 3 32 32 H 1.07999 * 125.96011 * 359.97438 * 11 10 9 33 33 H 1.09001 * 109.47370 * 185.02226 * 14 13 12 34 34 H 1.09000 * 109.47186 * 65.02500 * 14 13 12 35 35 H 0.96996 * 120.00138 * 359.72617 * 18 17 15 36 36 H 1.08005 * 126.21295 * 179.74082 * 23 13 12 37 37 H 1.09004 * 109.46892 * 264.62090 * 25 24 6 38 38 H 1.09003 * 109.47463 * 24.61880 * 25 24 6 39 39 H 1.09003 * 109.47873 * 144.62304 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.1212 -1.3795 5 6 2.7857 1.0668 -2.1694 6 6 4.5026 -0.3481 -1.4031 7 7 5.4339 0.4629 -0.9597 8 7 6.5949 -0.0589 -1.1369 9 6 6.4753 -1.2355 -1.7051 10 6 7.5783 -2.1506 -2.0739 11 6 7.4539 -3.5155 -2.4056 12 7 8.6464 -3.9789 -2.6699 13 7 9.5724 -2.9399 -2.5191 14 6 11.0194 -3.0432 -2.7235 15 6 11.5702 -4.1524 -1.8649 16 1 10.9084 -4.7236 -1.2307 17 6 12.9187 -4.4388 -1.8898 18 7 13.7251 -3.7403 -2.6588 19 14 13.6012 -5.8142 -0.8260 20 1 12.9550 -7.0975 -1.2013 21 1 15.0678 -5.9196 -1.0341 22 1 13.3234 -5.5193 0.6026 23 6 8.9043 -1.8292 -2.1481 24 7 5.1320 -1.4553 -1.8983 25 6 4.5059 -2.6322 -2.5058 26 1 -1.0500 -0.0002 0.0000 27 1 3.0097 -0.8403 0.5904 28 1 3.0089 0.9328 0.4334 29 1 3.1865 0.9638 -3.1777 30 1 1.7012 1.1644 -2.2178 31 1 3.2097 1.9539 -1.6987 32 1 6.5335 -4.0797 -2.4350 33 1 11.4935 -2.1011 -2.4482 34 1 11.2237 -3.2598 -3.7721 35 1 13.3706 -3.0263 -3.2115 36 1 9.3381 -0.8603 -1.9489 37 1 4.3800 -3.4075 -1.7500 38 1 3.5316 -2.3575 -2.9102 39 1 5.1400 -3.0074 -3.3091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519187511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:33 Heat of formation + Delta-G solvation = 206.749689 kcal Electronic energy + Delta-G solvation = -22954.629866 eV Core-core repulsion = 19515.995653 eV Total energy + Delta-G solvation = -3438.634214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.98360 -42.12850 -38.90681 -36.29129 -35.86541 -34.11582 -33.48919 -32.36440 -29.98746 -28.93466 -28.61115 -28.42741 -26.02290 -25.47055 -23.70803 -22.40062 -21.55034 -21.23068 -19.31604 -19.14402 -18.43275 -17.82627 -17.49129 -17.02969 -16.31816 -16.21822 -15.86834 -15.73055 -15.54671 -15.16659 -14.38242 -14.30950 -14.25218 -14.06470 -13.94093 -13.72122 -13.35332 -13.25545 -13.04065 -12.76647 -12.59151 -12.01546 -11.95584 -11.68594 -11.56424 -11.31101 -11.20235 -11.17945 -10.85200 -10.71075 -10.40991 -10.04041 -9.15232 -8.79675 -6.57803 0.26035 0.98148 1.02122 1.38013 1.52100 1.58116 1.58289 1.79881 1.86258 1.89281 2.16644 2.48227 2.78772 2.99963 3.30331 3.42122 3.53703 3.79797 3.88100 3.93501 4.12909 4.20537 4.21711 4.35172 4.44465 4.48965 4.56437 4.59332 4.64308 4.78276 4.81155 4.88538 4.98510 5.06810 5.37768 5.43207 5.47799 5.60235 5.77163 6.10246 6.14219 6.36001 6.66604 6.70886 7.17480 7.58812 8.57562 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.035462 B = 0.002630 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.395033 B =10643.425805 C =10780.955728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.223 4.223 3 C 0.178 3.822 4 N -0.455 5.455 5 C 0.037 3.963 6 C 0.338 3.662 7 N -0.334 5.334 8 N -0.326 5.326 9 C 0.290 3.710 10 C -0.202 4.202 11 C 0.063 3.937 12 N -0.313 5.313 13 N -0.338 5.338 14 C 0.254 3.746 15 C -0.622 4.622 16 H 0.049 0.951 17 C -0.019 4.019 18 N -0.922 5.922 19 Si 1.119 2.881 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.272 1.272 23 C 0.103 3.897 24 N -0.460 5.460 25 C 0.066 3.934 26 H 0.252 0.748 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.220 0.780 33 H 0.051 0.949 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.192 0.808 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.797 5.293 1.255 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.224 4.224 3 C 0.052 3.948 4 N -0.181 5.181 5 C -0.110 4.110 6 C -0.019 4.019 7 N -0.178 5.178 8 N -0.167 5.167 9 C 0.023 3.977 10 C -0.217 4.217 11 C -0.125 4.125 12 N -0.133 5.133 13 N -0.116 5.116 14 C 0.135 3.865 15 C -0.660 4.660 16 H 0.068 0.932 17 C -0.219 4.219 18 N -0.558 5.558 19 Si 0.940 3.060 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.197 1.197 23 C -0.050 4.050 24 N -0.152 5.152 25 C -0.075 4.075 26 H 0.269 0.731 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.236 0.764 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.209 0.791 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.158 4.258 1.646 24.585 hybrid contribution -1.859 1.282 -0.564 2.328 sum -26.017 5.540 1.082 26.622 Atomic orbital electron populations 1.25723 0.96499 0.98969 0.96358 1.22568 0.93868 1.02410 1.03552 1.18866 0.86079 1.02957 0.86862 1.58729 1.03193 1.41845 1.14306 1.22502 1.03099 0.88348 0.97051 1.22225 0.91716 0.86604 1.01356 1.74402 0.95533 1.25983 1.21888 1.74308 1.16708 1.06816 1.18873 1.21638 0.82188 0.94066 0.99792 1.17231 0.89443 0.93447 1.21600 1.24510 0.97134 0.92411 0.98458 1.77303 0.98431 1.13299 1.24315 1.48934 1.08347 1.05916 1.48379 1.19525 0.70850 0.98941 0.97207 1.22253 0.96175 1.19450 1.28121 0.93238 1.27265 0.93554 1.02636 0.98412 1.70948 1.38351 1.21090 1.25441 0.82882 0.75823 0.72762 0.74529 1.19797 1.20182 1.19729 1.22892 0.91953 0.93538 0.96624 1.46293 1.05611 1.17632 1.45639 1.22540 1.00468 0.84584 0.99890 0.73144 0.88759 0.90927 0.90980 0.88020 0.94011 0.76388 0.93074 0.95722 0.92925 0.79136 0.88119 0.86812 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 19.25 74.32 1.43 -0.30 16 2 C -0.22 -3.46 12.47 31.13 0.39 -3.07 16 3 C 0.18 3.21 5.38 84.50 0.45 3.67 16 4 N -0.46 -8.86 4.73 -741.37 -3.50 -12.37 16 5 C 0.04 0.61 9.25 127.69 1.18 1.79 16 6 C 0.34 8.70 6.39 260.02 1.66 10.37 16 7 N -0.33 -10.86 12.17 -57.89 -0.70 -11.56 16 8 N -0.33 -11.66 12.21 -50.77 -0.62 -12.28 16 9 C 0.29 9.15 7.91 136.30 1.08 10.23 16 10 C -0.20 -6.75 6.05 -20.39 -0.12 -6.87 16 11 C 0.06 1.99 10.80 85.55 0.92 2.91 16 12 N -0.31 -13.06 12.36 -56.37 -0.70 -13.75 16 13 N -0.34 -14.85 3.66 -350.77 -1.28 -16.13 16 14 C 0.25 12.58 5.57 85.63 0.48 13.06 16 15 C -0.62 -34.38 9.23 25.60 0.24 -34.14 16 16 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 17 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 18 N -0.92 -53.25 13.65 21.45 0.29 -52.96 16 19 Si 1.12 48.90 29.90 68.60 2.05 50.95 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 23 C 0.10 3.89 11.40 83.86 0.96 4.85 16 24 N -0.46 -11.31 3.24 -539.85 -1.75 -13.06 16 25 C 0.07 0.97 9.82 127.77 1.26 2.22 16 26 H 0.25 0.68 7.80 -4.42 -0.03 0.65 16 27 H 0.09 1.74 8.05 -2.39 -0.02 1.72 16 28 H 0.07 1.38 8.11 -2.38 -0.02 1.36 16 29 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 30 H 0.10 1.27 7.34 -2.39 -0.02 1.25 16 31 H 0.04 0.76 8.13 -2.39 -0.02 0.74 16 32 H 0.22 4.65 6.27 -2.91 -0.02 4.63 16 33 H 0.05 2.48 7.93 -2.39 -0.02 2.46 16 34 H 0.02 1.29 8.01 -2.39 -0.02 1.27 16 35 H 0.26 14.89 7.22 -92.71 -0.67 14.22 16 36 H 0.19 6.45 8.06 -2.91 -0.02 6.43 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 39 H 0.10 1.33 6.55 -2.39 -0.02 1.32 16 Total: -1.00 -72.22 347.86 5.34 -66.88 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.16 Total: 10.13 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 10.38 Total: 4.15 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -8.26 Total: -132.11 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.05 Total: 50.95 kcal Total: -72.22 5.34 -66.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519187511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 273.633 kcal (2) G-P(sol) polarization free energy of solvation -72.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds