Wall clock time and date at job start Fri Apr 10 2020 20:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46784 * 2 1 4 4 H 1.09000 * 109.47286 * 304.99372 * 3 2 1 5 5 C 1.53003 * 109.46613 * 184.99761 * 3 2 1 6 6 N 1.46510 * 109.47064 * 174.99952 * 5 3 2 7 7 C 1.34775 * 120.00114 * 179.72176 * 6 5 3 8 8 O 1.21585 * 119.99623 * 0.27798 * 7 6 5 9 9 N 1.34776 * 120.00032 * 180.27346 * 7 6 5 10 10 C 1.47021 * 125.64745 * 359.69682 * 9 7 6 11 11 C 1.54332 * 107.26256 * 178.84555 * 10 9 7 12 12 C 1.55149 * 103.02259 * 338.14132 * 11 10 9 13 13 O 1.42900 * 111.00366 * 277.23156 * 12 11 10 14 14 C 1.50701 * 111.03822 * 153.39464 * 12 11 10 15 15 H 1.08000 * 120.00397 * 272.60937 * 14 12 11 16 16 C 1.37880 * 119.99929 * 92.60757 * 14 12 11 17 17 N 1.31515 * 119.99700 * 173.52026 * 16 14 12 18 18 Si 1.86800 * 120.00151 * 353.52035 * 16 14 12 19 19 H 1.48501 * 109.46915 * 87.31996 * 18 16 14 20 20 H 1.48498 * 109.47391 * 207.32075 * 18 16 14 21 21 H 1.48498 * 109.47033 * 327.32251 * 18 16 14 22 22 C 1.47423 * 125.64765 * 179.97438 * 9 7 6 23 23 C 1.50704 * 109.47165 * 65.00105 * 3 2 1 24 24 O 1.20827 * 119.99933 * 120.00071 * 23 3 2 25 25 O 1.34226 * 119.99682 * 299.99371 * 23 3 2 26 26 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47550 * 300.00189 * 1 2 3 28 28 H 1.09001 * 109.47204 * 60.00163 * 1 2 3 29 29 H 1.08998 * 109.47126 * 239.99482 * 2 1 3 30 30 H 1.09000 * 109.46367 * 119.99462 * 2 1 3 31 31 H 1.08994 * 109.47547 * 55.00105 * 5 3 2 32 32 H 1.09002 * 109.47135 * 294.99721 * 5 3 2 33 33 H 0.97000 * 119.99550 * 0.02562 * 6 5 3 34 34 H 1.08998 * 109.88047 * 298.39330 * 10 9 7 35 35 H 1.09006 * 109.88351 * 59.55926 * 10 9 7 36 36 H 1.09003 * 110.85189 * 219.66789 * 11 10 9 37 37 H 1.09006 * 110.51440 * 96.45249 * 11 10 9 38 38 H 0.96700 * 113.99905 * 168.40435 * 13 12 11 39 39 H 0.97000 * 119.99678 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.36658 * 322.93831 * 22 9 7 41 41 H 1.09005 * 110.36212 * 85.14745 * 22 9 7 42 42 H 0.96699 * 116.99671 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0433 2.8238 -0.2458 7 6 5.3628 3.0716 -0.3632 8 8 6.1557 2.1499 -0.3746 9 7 5.8034 4.3410 -0.4682 10 6 4.9578 5.5437 -0.4747 11 6 5.8972 6.7633 -0.5836 12 6 7.2522 6.2079 -0.0713 13 8 7.3084 6.2312 1.3564 14 6 8.4087 6.9687 -0.6670 15 1 8.8211 6.6666 -1.6184 16 6 8.9404 8.0504 0.0026 17 7 10.0272 8.6354 -0.4515 18 14 8.1170 8.6849 1.5546 19 1 8.6392 7.9435 2.7305 20 1 8.4079 10.1325 1.7129 21 1 6.6492 8.4831 1.4542 22 6 7.2126 4.7531 -0.6012 23 6 1.6412 2.1163 1.2877 24 8 2.4896 2.5531 2.0288 25 8 0.3436 2.2311 1.6112 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8571 0.8800 -1.0112 32 1 4.0028 0.9836 0.7598 33 1 3.4106 3.5591 -0.2363 34 1 4.2815 5.5166 -1.3290 35 1 4.3862 5.6000 0.4518 36 1 5.5497 7.5786 0.0511 37 1 5.9812 7.0893 -1.6204 38 1 8.0514 5.7368 1.7288 39 1 10.4010 9.3966 0.0193 40 1 7.8541 4.1116 0.0029 41 1 7.5204 4.7200 -1.6464 42 1 0.1369 2.6712 2.4471 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573798902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:37 Heat of formation + Delta-G solvation = -169.925404 kcal Electronic energy + Delta-G solvation = -25397.788529 eV Core-core repulsion = 21570.926035 eV Total energy + Delta-G solvation = -3826.862493 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90314 -39.76510 -37.85494 -36.58651 -36.08582 -34.66943 -33.69574 -32.34482 -30.47783 -29.22601 -28.21912 -25.59514 -24.46473 -23.30473 -22.35145 -20.82565 -19.82048 -19.58478 -18.44356 -17.88380 -17.40552 -17.31607 -16.23292 -15.67968 -15.51190 -15.02822 -14.81953 -14.39707 -14.29819 -14.08330 -13.85933 -13.56816 -13.44792 -12.88579 -12.65854 -12.36123 -12.33683 -12.04700 -11.94507 -11.64058 -11.56341 -11.49482 -11.46488 -11.22687 -10.99726 -10.70951 -10.47273 -10.35983 -10.17799 -9.80119 -9.21075 -8.97395 -8.63879 -8.49928 -7.95178 -6.17380 -4.29183 1.90212 2.64783 2.90745 3.48319 3.54059 3.57925 3.71710 4.12279 4.18846 4.48448 4.52288 4.54766 4.89650 4.97717 5.03201 5.07948 5.18036 5.30923 5.37685 5.46966 5.56174 5.60191 5.62011 5.74748 5.81956 5.91276 5.99518 6.12956 6.19297 6.52407 6.55909 6.58334 6.68863 6.75713 7.08029 7.34826 7.51032 7.59027 8.15149 8.31552 8.65454 8.83993 8.93286 9.44442 10.91451 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.029502 B = 0.003459 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.864945 B = 8093.042530 C = 8600.125019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.093 4.093 4 H 0.115 0.885 5 C 0.154 3.846 6 N -0.744 5.744 7 C 0.723 3.277 8 O -0.599 6.599 9 N -0.628 5.628 10 C 0.102 3.898 11 C -0.119 4.119 12 C 0.219 3.781 13 O -0.559 6.559 14 C -0.551 4.551 15 H 0.082 0.918 16 C 0.074 3.926 17 N -0.888 5.888 18 Si 0.951 3.049 19 H -0.293 1.293 20 H -0.327 1.327 21 H -0.270 1.270 22 C 0.109 3.891 23 C 0.474 3.526 24 O -0.495 6.495 25 O -0.513 6.513 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.392 0.608 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.371 0.629 39 H 0.266 0.734 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.557 -13.626 0.808 25.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.150 4.150 3 C -0.112 4.112 4 H 0.133 0.867 5 C 0.030 3.970 6 N -0.400 5.400 7 C 0.425 3.575 8 O -0.478 6.478 9 N -0.364 5.364 10 C -0.022 4.022 11 C -0.158 4.158 12 C 0.178 3.822 13 O -0.366 6.366 14 C -0.588 4.588 15 H 0.100 0.900 16 C -0.131 4.131 17 N -0.523 5.523 18 Si 0.787 3.213 19 H -0.221 1.221 20 H -0.259 1.259 21 H -0.196 1.196 22 C -0.014 4.014 23 C 0.315 3.685 24 O -0.381 6.381 25 O -0.326 6.326 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.226 0.774 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.219 0.781 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -21.039 -13.983 0.558 25.268 hybrid contribution -0.331 0.780 1.390 1.628 sum -21.370 -13.203 1.948 25.195 Atomic orbital electron populations 1.21997 0.94292 1.02101 1.03588 1.21450 0.97234 0.92444 1.03909 1.21505 0.97193 0.98658 0.93876 0.86672 1.21016 0.89229 0.83640 1.03154 1.44922 1.06325 1.08105 1.80648 1.15360 0.81986 0.82269 0.77885 1.90881 1.54529 1.42901 1.59529 1.47670 1.09560 1.03335 1.75872 1.22041 0.94194 0.86249 0.99679 1.22942 0.94891 0.95627 1.02291 1.20247 0.93962 0.89956 0.77990 1.86109 1.53547 1.74486 1.22499 1.21109 1.15113 1.14130 1.08486 0.90033 1.25112 0.93923 0.95590 0.98433 1.69972 1.19780 1.22001 1.40577 0.85639 0.80318 0.73762 0.81563 1.22060 1.25860 1.19608 1.22975 0.79508 0.97446 1.01457 1.23445 0.80074 0.76768 0.88209 1.90839 1.51415 1.44613 1.51238 1.84594 1.28341 1.74166 1.45452 0.92411 0.90444 0.92432 0.89714 0.90980 0.90076 0.90770 0.77431 0.92898 0.92545 0.90232 0.89631 0.78056 0.92424 0.91224 0.91235 0.73442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.55 37.16 0.35 -0.50 16 2 C -0.11 -0.66 5.39 -26.73 -0.14 -0.80 16 3 C -0.09 -0.71 2.37 -91.77 -0.22 -0.93 16 4 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 5 C 0.15 1.75 4.63 -4.03 -0.02 1.73 16 6 N -0.74 -10.59 4.77 -65.22 -0.31 -10.90 16 7 C 0.72 13.64 8.49 -86.92 -0.74 12.91 16 8 O -0.60 -13.29 16.60 5.29 0.09 -13.20 16 9 N -0.63 -11.92 3.33 -176.25 -0.59 -12.51 16 10 C 0.10 1.70 6.15 -3.06 -0.02 1.69 16 11 C -0.12 -2.35 5.90 -24.90 -0.15 -2.49 16 12 C 0.22 4.91 0.70 -89.64 -0.06 4.84 16 13 O -0.56 -12.56 8.52 -35.23 -0.30 -12.86 16 14 C -0.55 -14.63 8.89 -34.44 -0.31 -14.94 16 15 H 0.08 2.34 8.00 -52.49 -0.42 1.92 16 16 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 17 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 18 Si 0.95 23.60 24.93 -169.99 -4.24 19.37 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.33 -8.30 7.11 56.52 0.40 -7.90 16 21 H -0.27 -6.55 5.42 56.52 0.31 -6.24 16 22 C 0.11 2.29 6.07 -2.54 -0.02 2.27 16 23 C 0.47 4.41 7.27 36.01 0.26 4.67 16 24 O -0.50 -6.77 16.05 -18.75 -0.30 -7.07 16 25 O -0.51 -3.23 10.57 -39.25 -0.41 -3.65 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.45 5.46 -51.93 -0.28 0.17 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.99 7.96 -51.93 -0.41 0.57 16 33 H 0.39 4.93 7.14 -40.82 -0.29 4.64 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.60 6.65 -51.93 -0.35 1.26 16 37 H 0.09 1.63 8.03 -51.93 -0.42 1.21 16 38 H 0.37 7.57 8.98 45.56 0.41 7.98 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 1.51 8.02 -51.93 -0.42 1.09 16 41 H 0.07 1.47 7.99 -51.93 -0.41 1.06 16 42 H 0.41 1.24 9.10 45.56 0.41 1.66 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -35.80 339.98 -6.10 -41.90 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.79 Total: 8.99 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -1.15 Total: 10.42 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.12 Total: -49.03 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.93 Total: -36.78 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.24 Total: 19.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.80 -6.10 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573798902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.023 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds