Wall clock time and date at job start Fri Apr 10 2020 20:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 H 1.09000 * 109.47224 * 55.00092 * 3 2 1 5 5 C 1.53001 * 109.47129 * 174.99851 * 3 2 1 6 6 N 1.46497 * 109.47201 * 184.99772 * 5 3 2 7 7 C 1.34780 * 119.99824 * 180.02562 * 6 5 3 8 8 O 1.21576 * 120.00157 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99353 * 180.02562 * 7 6 5 10 10 C 1.47416 * 125.65197 * 359.97438 * 9 7 6 11 11 C 1.54915 * 104.83222 * 155.91128 * 10 9 7 12 12 C 1.55150 * 101.58155 * 37.00692 * 11 10 9 13 13 O 1.42902 * 110.72125 * 83.04251 * 12 11 10 14 14 C 1.50702 * 110.71940 * 206.13740 * 12 11 10 15 15 H 1.07995 * 119.99831 * 356.76549 * 14 12 11 16 16 C 1.37880 * 119.99776 * 176.49168 * 14 12 11 17 17 N 1.31518 * 119.99950 * 354.18565 * 16 14 12 18 18 Si 1.86802 * 119.99793 * 174.18124 * 16 14 12 19 19 H 1.48503 * 109.46825 * 94.99217 * 18 16 14 20 20 H 1.48502 * 109.46898 * 214.98837 * 18 16 14 21 21 H 1.48497 * 109.47244 * 334.99396 * 18 16 14 22 22 C 1.47317 * 125.61146 * 180.20157 * 9 7 6 23 23 C 1.50699 * 109.46922 * 294.99783 * 3 2 1 24 24 O 1.20822 * 120.00171 * 239.99631 * 23 3 2 25 25 O 1.34227 * 119.99866 * 60.00525 * 23 3 2 26 26 H 1.08997 * 109.47141 * 59.99936 * 1 2 3 27 27 H 1.09001 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47082 * 300.00307 * 1 2 3 29 29 H 1.08993 * 109.47091 * 239.99661 * 2 1 3 30 30 H 1.09001 * 109.46893 * 119.99623 * 2 1 3 31 31 H 1.09003 * 109.46902 * 64.99940 * 5 3 2 32 32 H 1.08998 * 109.47368 * 305.00295 * 5 3 2 33 33 H 0.97002 * 119.99726 * 0.02562 * 6 5 3 34 34 H 1.09003 * 110.36999 * 37.07370 * 10 9 7 35 35 H 1.09002 * 110.37030 * 274.74555 * 10 9 7 36 36 H 1.09004 * 111.00121 * 278.93593 * 11 10 9 37 37 H 1.09001 * 111.00417 * 155.08680 * 11 10 9 38 38 H 0.96697 * 113.99890 * 182.44319 * 13 12 11 39 39 H 0.96998 * 119.99682 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.06326 * 61.67614 * 22 9 7 41 41 H 1.09005 * 109.85312 * 300.42256 * 22 9 7 42 42 H 0.96700 * 117.00013 * 179.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 4.0433 2.8237 0.2458 7 6 5.3625 3.0712 0.3684 8 8 6.1554 2.1496 0.3790 9 7 5.8025 4.3403 0.4794 10 6 4.9551 5.5465 0.4806 11 6 5.7901 6.6170 1.2267 12 6 7.2254 6.2895 0.7371 13 8 7.4772 6.8953 -0.5324 14 6 8.2487 6.7340 1.7502 15 1 7.9344 7.2555 2.6421 16 6 9.5857 6.4700 1.5409 17 7 9.9581 5.7323 0.5178 18 14 10.8682 7.1603 2.7106 19 1 11.1934 6.1445 3.7439 20 1 12.0969 7.5043 1.9508 21 1 10.3340 8.3805 3.3669 22 6 7.2107 4.7512 0.6147 23 6 1.6413 2.1162 -1.2877 24 8 2.4897 2.5530 -2.0288 25 8 0.3437 2.2311 -1.6113 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.0029 0.9835 -0.7596 32 1 3.8571 0.8800 1.0113 33 1 3.4106 3.5590 0.2370 34 1 4.0227 5.3547 1.0117 35 1 4.7515 5.8683 -0.5408 36 1 5.7080 6.4937 2.3066 37 1 5.4946 7.6223 0.9262 38 1 8.3476 6.6904 -0.9003 39 1 10.8987 5.5469 0.3704 40 1 7.7761 4.4439 -0.2650 41 1 7.6424 4.3039 1.5101 42 1 0.1370 2.6712 -2.4472 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573798922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:39 Heat of formation + Delta-G solvation = -175.006982 kcal Electronic energy + Delta-G solvation = -25331.264009 eV Core-core repulsion = 21504.181162 eV Total energy + Delta-G solvation = -3827.082847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81006 -39.47961 -37.48633 -36.46708 -35.96829 -34.21394 -33.50084 -32.19502 -30.19535 -29.06257 -27.66924 -25.43535 -24.37272 -23.26897 -22.31277 -20.72975 -19.62834 -19.28790 -18.36320 -17.57770 -17.27106 -17.00496 -16.14211 -15.61136 -15.23569 -14.88657 -14.44216 -14.23719 -14.16363 -13.86332 -13.74842 -13.25980 -12.88164 -12.86291 -12.71593 -12.28440 -12.05915 -11.97492 -11.66806 -11.48617 -11.41285 -11.34817 -11.15486 -11.01360 -10.76167 -10.62694 -10.61440 -10.47870 -10.14087 -9.55164 -9.24590 -8.78118 -8.67777 -8.26816 -7.67890 -6.24247 -4.33034 1.98226 2.72739 3.13391 3.23747 3.31283 3.34781 3.83422 4.24204 4.29037 4.36153 4.61151 4.65448 4.97512 5.02574 5.06387 5.16016 5.39027 5.42044 5.58781 5.63345 5.70745 5.74528 5.81423 5.87034 6.05792 6.06569 6.14260 6.26568 6.55956 6.75872 6.76756 6.95850 7.05438 7.33775 7.36135 7.66700 7.69622 7.76896 8.06943 8.59240 8.70912 9.19911 9.33027 9.39219 10.82860 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.003225 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.278444 B = 8680.809256 C = 9011.578091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C -0.092 4.092 4 H 0.115 0.885 5 C 0.155 3.845 6 N -0.747 5.747 7 C 0.719 3.281 8 O -0.598 6.598 9 N -0.631 5.631 10 C 0.105 3.895 11 C -0.115 4.115 12 C 0.247 3.753 13 O -0.584 6.584 14 C -0.538 4.538 15 H 0.066 0.934 16 C 0.070 3.930 17 N -0.891 5.891 18 Si 0.903 3.097 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.126 3.874 23 C 0.474 3.526 24 O -0.495 6.495 25 O -0.513 6.513 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.390 0.610 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.381 0.619 39 H 0.270 0.730 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.825 -7.758 -1.051 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.151 4.151 3 C -0.112 4.112 4 H 0.133 0.867 5 C 0.030 3.970 6 N -0.404 5.404 7 C 0.421 3.579 8 O -0.477 6.477 9 N -0.368 5.368 10 C -0.019 4.019 11 C -0.153 4.153 12 C 0.206 3.794 13 O -0.393 6.393 14 C -0.577 4.577 15 H 0.084 0.916 16 C -0.134 4.134 17 N -0.529 5.529 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.197 1.197 22 C 0.004 3.996 23 C 0.315 3.685 24 O -0.380 6.380 25 O -0.326 6.326 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.224 0.776 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -19.330 -8.435 -0.890 21.109 hybrid contribution 0.858 0.728 -0.110 1.130 sum -18.472 -7.707 -1.000 20.040 Atomic orbital electron populations 1.21996 0.94354 1.02039 1.03555 1.21449 0.97158 0.92541 1.03907 1.21507 0.97342 0.98553 0.93797 0.86713 1.20986 0.89032 0.83933 1.03076 1.44958 1.06464 1.07857 1.81114 1.15429 0.81801 0.82574 0.78120 1.90875 1.54441 1.42991 1.59357 1.48031 1.10412 1.02936 1.75407 1.22206 0.93343 0.86347 0.99986 1.22716 0.95946 0.97386 0.99259 1.19512 0.90755 0.86323 0.82793 1.86110 1.40512 1.75677 1.36974 1.21490 0.91252 1.38295 1.06625 0.91554 1.25088 0.98883 0.93746 0.95642 1.69775 1.17556 1.36344 1.29263 0.86402 0.80608 0.79396 0.80573 1.20548 1.20944 1.19682 1.22906 0.77121 0.98006 1.01593 1.23459 0.80019 0.76772 0.88228 1.90834 1.51406 1.44582 1.51219 1.84599 1.28416 1.74197 1.45398 0.90465 0.92463 0.92453 0.91001 0.89725 0.90876 0.90197 0.77630 0.92903 0.92099 0.90531 0.90657 0.76927 0.92048 0.91837 0.91682 0.73535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.55 37.16 0.35 -0.60 16 2 C -0.11 -0.75 5.39 -26.73 -0.14 -0.90 16 3 C -0.09 -0.80 2.37 -91.77 -0.22 -1.02 16 4 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 5 C 0.15 1.97 4.63 -4.04 -0.02 1.95 16 6 N -0.75 -11.86 4.77 -65.23 -0.31 -12.17 16 7 C 0.72 15.34 8.49 -86.91 -0.74 14.60 16 8 O -0.60 -15.00 16.67 5.30 0.09 -14.91 16 9 N -0.63 -13.73 3.33 -176.00 -0.59 -14.32 16 10 C 0.10 1.92 6.57 -2.53 -0.02 1.90 16 11 C -0.12 -2.33 6.23 -24.58 -0.15 -2.48 16 12 C 0.25 6.08 0.85 -89.94 -0.08 6.00 16 13 O -0.58 -14.95 13.08 -35.23 -0.46 -15.41 16 14 C -0.54 -14.23 8.11 -34.44 -0.28 -14.51 16 15 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 16 C 0.07 1.85 5.25 -17.82 -0.09 1.75 16 17 N -0.89 -24.18 10.98 55.43 0.61 -23.57 16 18 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.13 3.17 5.22 -2.90 -0.02 3.16 16 23 C 0.47 4.75 7.27 36.01 0.26 5.01 16 24 O -0.49 -7.12 16.05 -18.75 -0.30 -7.42 16 25 O -0.51 -3.50 10.57 -39.25 -0.41 -3.91 16 26 H 0.08 0.49 5.46 -51.93 -0.28 0.21 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.08 7.96 -51.93 -0.41 0.66 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.39 5.42 6.64 -40.82 -0.27 5.15 16 34 H 0.05 0.78 7.30 -51.93 -0.38 0.40 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.38 9.96 7.53 45.56 0.34 10.30 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.76 7.90 -51.93 -0.41 1.35 16 41 H 0.06 1.79 7.81 -51.93 -0.41 1.38 16 42 H 0.41 1.40 9.10 45.56 0.41 1.81 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -33.84 345.19 -7.08 -40.92 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -4.75 Total: 15.07 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: -1.14 Total: 14.88 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.29 Total: -50.06 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.09 Total: -41.65 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.84 -7.08 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573798922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.084 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds