Wall clock time and date at job start Fri Apr 10 2020 20:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47505 * 2 1 4 4 H 1.09008 * 109.46613 * 54.99688 * 3 2 1 5 5 C 1.52996 * 109.47530 * 174.99849 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 5 9 9 N 1.34777 * 120.00128 * 180.27942 * 7 6 5 10 10 C 1.47025 * 125.64719 * 359.69261 * 9 7 6 11 11 C 1.54330 * 107.26680 * 178.85253 * 10 9 7 12 12 C 1.55161 * 103.01958 * 338.14105 * 11 10 9 13 13 O 1.42903 * 111.00102 * 277.23266 * 12 11 10 14 14 C 1.50700 * 111.03876 * 153.39641 * 12 11 10 15 15 H 1.08003 * 119.99702 * 6.32631 * 14 12 11 16 16 C 1.37878 * 120.00145 * 186.32967 * 14 12 11 17 17 N 1.31512 * 119.99870 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00010 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.46901 * 90.00105 * 18 16 14 20 20 H 1.48495 * 109.47373 * 210.00065 * 18 16 14 21 21 H 1.48502 * 109.47213 * 330.00409 * 18 16 14 22 22 C 1.47428 * 125.65040 * 180.02562 * 9 7 6 23 23 C 1.50702 * 109.47126 * 295.00450 * 3 2 1 24 24 O 1.20821 * 119.99849 * 239.99651 * 23 3 2 25 25 O 1.34233 * 120.00085 * 59.99349 * 23 3 2 26 26 H 1.08996 * 109.46750 * 59.99836 * 1 2 3 27 27 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46562 * 299.99961 * 1 2 3 29 29 H 1.08998 * 109.47268 * 239.99965 * 2 1 3 30 30 H 1.09002 * 109.47423 * 120.00176 * 2 1 3 31 31 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 32 32 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 33 33 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 34 34 H 1.09004 * 109.87808 * 298.39629 * 10 9 7 35 35 H 1.08994 * 109.88263 * 59.55778 * 10 9 7 36 36 H 1.08997 * 110.85279 * 219.67209 * 11 10 9 37 37 H 1.09001 * 110.52034 * 96.45030 * 11 10 9 38 38 H 0.96709 * 113.99533 * 173.65042 * 13 12 11 39 39 H 0.97000 * 119.99586 * 179.97438 * 17 16 14 40 40 H 1.09005 * 110.36272 * 322.92548 * 22 9 7 41 41 H 1.08992 * 110.37142 * 85.13615 * 22 9 7 42 42 H 0.96700 * 116.99817 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 7 4.0433 2.8238 0.2458 7 6 5.3620 3.0709 0.3746 8 8 6.1549 2.1492 0.3860 9 7 5.8017 4.3396 0.4907 10 6 4.9570 5.5430 0.4857 11 6 5.8898 6.7581 0.6733 12 6 7.1485 6.1342 1.3319 13 8 6.9710 5.9914 2.7426 14 6 8.3794 6.9477 1.0249 15 1 8.2881 7.8894 0.5039 16 6 9.6219 6.4900 1.4091 17 7 9.7330 5.3431 2.0430 18 14 11.1476 7.4981 1.0279 19 1 11.4183 8.4305 2.1517 20 1 12.3086 6.5901 0.8475 21 1 10.9287 8.2754 -0.2184 22 6 7.2098 4.7510 0.6367 23 6 1.6414 2.1163 -1.2877 24 8 2.4897 2.5531 -2.0288 25 8 0.3437 2.2311 -1.6113 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.0030 0.9836 -0.7596 32 1 3.8571 0.8800 1.0113 33 1 3.4107 3.5591 0.2370 34 1 4.4293 5.6215 -0.4648 35 1 4.2415 5.4971 1.3066 36 1 5.4358 7.4976 1.3329 37 1 6.1387 7.2012 -0.2910 38 1 7.6899 5.5183 3.1837 39 1 10.6072 5.0209 2.3129 40 1 7.7509 4.0376 1.2585 41 1 7.6835 4.8365 -0.3411 42 1 0.1370 2.6707 -2.4475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573798923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:42 Heat of formation + Delta-G solvation = -175.598107 kcal Electronic energy + Delta-G solvation = -25359.371026 eV Core-core repulsion = 21532.262546 eV Total energy + Delta-G solvation = -3827.108480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81313 -39.47307 -37.46287 -36.46499 -35.95867 -34.16341 -33.48000 -32.18544 -30.24773 -29.06475 -27.66445 -25.43186 -24.38061 -23.26756 -22.25584 -20.72613 -19.61188 -19.30428 -18.37216 -17.56980 -17.29433 -16.93888 -16.11617 -15.58021 -15.15909 -14.94622 -14.47379 -14.24812 -14.14465 -13.94660 -13.74415 -13.27708 -12.99800 -12.79292 -12.69784 -12.21380 -12.01646 -11.96731 -11.63388 -11.52121 -11.39377 -11.31788 -11.15242 -11.00135 -10.77630 -10.63134 -10.55357 -10.43268 -10.14912 -9.55474 -9.31641 -8.76302 -8.65228 -8.30619 -7.61253 -6.23080 -4.32728 1.97413 2.72465 3.14986 3.24862 3.31579 3.34139 3.84396 4.25040 4.29210 4.37803 4.62337 4.67628 4.97848 5.03940 5.07457 5.16713 5.39909 5.46752 5.59930 5.64278 5.71277 5.72107 5.82057 5.86954 6.05882 6.06389 6.16492 6.25592 6.56084 6.75327 6.78291 6.95037 7.02932 7.29233 7.37978 7.65846 7.69986 7.79007 8.08439 8.60248 8.71833 9.21112 9.34555 9.42663 10.83958 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.032612 B = 0.003217 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.374586 B = 8702.791514 C = 8971.620957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C -0.093 4.093 4 H 0.115 0.885 5 C 0.155 3.845 6 N -0.746 5.746 7 C 0.720 3.280 8 O -0.598 6.598 9 N -0.628 5.628 10 C 0.106 3.894 11 C -0.115 4.115 12 C 0.248 3.752 13 O -0.583 6.583 14 C -0.537 4.537 15 H 0.066 0.934 16 C 0.071 3.929 17 N -0.891 5.891 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.115 3.885 23 C 0.475 3.525 24 O -0.496 6.496 25 O -0.513 6.513 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.390 0.610 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.381 0.619 39 H 0.270 0.730 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.286 -7.213 -4.018 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.151 4.151 3 C -0.112 4.112 4 H 0.133 0.867 5 C 0.030 3.970 6 N -0.403 5.403 7 C 0.422 3.578 8 O -0.477 6.477 9 N -0.364 5.364 10 C -0.018 4.018 11 C -0.153 4.153 12 C 0.208 3.792 13 O -0.391 6.391 14 C -0.576 4.576 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.530 5.530 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.007 4.007 23 C 0.316 3.684 24 O -0.382 6.382 25 O -0.326 6.326 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.223 0.777 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -18.779 -7.852 -3.913 20.727 hybrid contribution 0.890 0.856 -0.707 1.423 sum -17.888 -6.996 -4.620 19.755 Atomic orbital electron populations 1.21995 0.94356 1.02039 1.03552 1.21451 0.97155 0.92535 1.03910 1.21514 0.97372 0.98557 0.93791 0.86672 1.20983 0.89008 0.83952 1.03064 1.44938 1.06504 1.07838 1.81013 1.15427 0.81792 0.82558 0.78038 1.90879 1.54450 1.42920 1.59461 1.47897 1.10418 1.02907 1.75227 1.21910 0.94225 0.86565 0.99073 1.22585 0.96331 0.95565 1.00852 1.19637 0.91073 0.89311 0.79224 1.86099 1.50608 1.80738 1.21678 1.21451 0.90699 1.06719 1.38701 0.91576 1.25082 0.99466 0.94797 0.93914 1.69725 1.25269 1.19188 1.38810 0.86408 0.81831 0.79837 0.78838 1.20437 1.21030 1.19735 1.23116 0.77767 0.99226 1.00628 1.23468 0.79994 0.76702 0.88199 1.90821 1.51428 1.44702 1.51267 1.84607 1.28418 1.74205 1.45335 0.90492 0.92460 0.92426 0.91021 0.89698 0.90902 0.90178 0.77651 0.93216 0.92861 0.90828 0.90468 0.76946 0.92031 0.89653 0.92557 0.73571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.55 37.16 0.36 -0.62 16 2 C -0.11 -0.77 5.39 -26.73 -0.14 -0.91 16 3 C -0.09 -0.82 2.37 -91.77 -0.22 -1.04 16 4 H 0.12 0.85 8.14 -51.92 -0.42 0.42 16 5 C 0.15 2.00 4.63 -4.04 -0.02 1.98 16 6 N -0.75 -12.00 4.77 -65.23 -0.31 -12.31 16 7 C 0.72 15.47 8.49 -86.92 -0.74 14.73 16 8 O -0.60 -15.06 16.60 5.28 0.09 -14.98 16 9 N -0.63 -13.69 3.33 -176.22 -0.59 -14.28 16 10 C 0.11 1.94 6.15 -3.06 -0.02 1.93 16 11 C -0.12 -2.34 6.13 -24.89 -0.15 -2.50 16 12 C 0.25 6.12 0.87 -89.61 -0.08 6.04 16 13 O -0.58 -14.99 13.16 -35.23 -0.46 -15.46 16 14 C -0.54 -14.18 8.27 -34.44 -0.28 -14.47 16 15 H 0.07 1.71 7.79 -52.48 -0.41 1.30 16 16 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 17 N -0.89 -24.17 10.69 55.43 0.59 -23.58 16 18 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 C 0.11 2.87 5.38 -2.52 -0.01 2.85 16 23 C 0.48 4.73 7.27 36.01 0.26 5.00 16 24 O -0.50 -7.01 16.05 -18.75 -0.30 -7.31 16 25 O -0.51 -3.47 10.57 -39.26 -0.41 -3.88 16 26 H 0.08 0.49 5.46 -51.93 -0.28 0.21 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.39 5.52 7.14 -40.82 -0.29 5.23 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 38 H 0.38 10.07 7.57 45.56 0.34 10.41 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.09 2.39 7.33 -51.93 -0.38 2.01 16 41 H 0.06 1.47 8.03 -51.93 -0.42 1.05 16 42 H 0.41 1.34 9.10 45.56 0.41 1.76 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -33.65 345.80 -7.14 -40.79 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -4.79 Total: 15.40 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: -1.14 Total: 14.78 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.30 Total: -50.17 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.09 Total: -41.63 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.65 -7.14 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573798923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.809 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds