Wall clock time and date at job start Fri Apr 10 2020 20:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47381 * 2 1 4 4 H 1.09001 * 109.47112 * 305.00345 * 3 2 1 5 5 C 1.53003 * 109.47014 * 184.99667 * 3 2 1 6 6 N 1.46499 * 109.46708 * 174.99880 * 5 3 2 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 3 8 8 O 1.21588 * 119.99858 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99935 * 179.72905 * 7 6 5 10 10 C 1.47028 * 125.64925 * 0.02562 * 9 7 6 11 11 C 1.54323 * 107.26964 * 181.02625 * 10 9 7 12 12 C 1.55159 * 102.94419 * 22.19094 * 11 10 9 13 13 O 1.42903 * 111.00151 * 82.57223 * 12 11 10 14 14 C 1.50695 * 111.00487 * 206.38380 * 12 11 10 15 15 H 1.07997 * 120.00322 * 0.02562 * 14 12 11 16 16 C 1.37886 * 119.99830 * 180.02562 * 14 12 11 17 17 N 1.31508 * 119.99843 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99711 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47133 * 60.00173 * 18 16 14 20 20 H 1.48503 * 109.46992 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47565 * 299.99818 * 18 16 14 22 22 C 1.47424 * 125.64845 * 179.71487 * 9 7 6 23 23 C 1.50700 * 109.46897 * 65.00191 * 3 2 1 24 24 O 1.20824 * 120.00453 * 120.00140 * 23 3 2 25 25 O 1.34234 * 119.99936 * 299.99677 * 23 3 2 26 26 H 1.09000 * 109.47573 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47125 * 300.00260 * 1 2 3 28 28 H 1.09003 * 109.47094 * 59.99465 * 1 2 3 29 29 H 1.09001 * 109.47125 * 239.99740 * 2 1 3 30 30 H 1.08997 * 109.47101 * 120.00075 * 2 1 3 31 31 H 1.08998 * 109.46692 * 55.00382 * 5 3 2 32 32 H 1.08994 * 109.47584 * 295.00246 * 5 3 2 33 33 H 0.97005 * 120.00261 * 0.02562 * 6 5 3 34 34 H 1.08997 * 109.88118 * 300.44485 * 10 9 7 35 35 H 1.09001 * 109.87916 * 61.60759 * 10 9 7 36 36 H 1.08995 * 110.72048 * 140.55882 * 11 10 9 37 37 H 1.09002 * 110.71755 * 263.65540 * 11 10 9 38 38 H 0.96703 * 114.00285 * 179.97438 * 13 12 11 39 39 H 0.97005 * 119.99794 * 180.02562 * 17 16 14 40 40 H 1.08994 * 110.36962 * 274.74891 * 22 9 7 41 41 H 1.09007 * 110.36287 * 37.06823 * 22 9 7 42 42 H 0.96695 * 116.99660 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4442 -0.1256 6 7 4.0433 2.8237 -0.2457 7 6 5.3624 3.0711 -0.3693 8 8 6.1554 2.1494 -0.3807 9 7 5.8021 4.3398 -0.4853 10 6 4.9566 5.5425 -0.4914 11 6 5.8902 6.7581 -0.6712 12 6 7.1520 6.1336 -1.3233 13 8 6.9807 5.9887 -2.7346 14 6 8.3806 6.9490 -1.0122 15 1 8.2989 7.8384 -0.4052 16 6 9.6090 6.5594 -1.5026 17 7 9.7083 5.4765 -2.2422 18 14 11.1319 7.5697 -1.1164 19 1 11.3324 7.6205 0.3542 20 1 12.3168 6.9431 -1.7556 21 1 10.9574 8.9483 -1.6401 22 6 7.2111 4.7518 -0.6207 23 6 1.6414 2.1162 1.2877 24 8 2.4897 2.5530 2.0289 25 8 0.3437 2.2311 1.6113 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8570 0.8799 -1.0112 32 1 4.0029 0.9835 0.7597 33 1 3.4107 3.5590 -0.2363 34 1 4.2483 5.4936 -1.3184 35 1 4.4205 5.6235 0.4542 36 1 5.4388 7.4963 -1.3339 37 1 6.1322 7.2045 0.2933 38 1 7.7439 5.6027 -3.1860 39 1 10.5726 5.2023 -2.5869 40 1 7.6759 4.8423 0.3610 41 1 7.7579 4.0370 -1.2357 42 1 0.1371 2.6712 2.4472 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573798924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:45 Heat of formation + Delta-G solvation = -175.743404 kcal Electronic energy + Delta-G solvation = -25343.085880 eV Core-core repulsion = 21515.971100 eV Total energy + Delta-G solvation = -3827.114781 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81422 -39.47135 -37.44967 -36.46567 -35.96019 -34.18884 -33.48755 -32.10780 -30.25458 -29.06353 -27.70608 -25.43277 -24.38252 -23.26672 -22.25073 -20.72711 -19.59454 -19.30161 -18.37360 -17.57906 -17.30803 -16.98559 -16.11483 -15.57107 -15.14622 -14.96170 -14.45635 -14.24961 -14.15470 -13.92203 -13.74469 -13.27118 -12.99690 -12.78138 -12.72196 -12.21365 -12.01786 -11.96804 -11.61901 -11.51416 -11.39475 -11.34128 -11.15289 -10.99733 -10.75979 -10.63290 -10.54477 -10.47075 -10.14185 -9.56985 -9.35098 -8.76628 -8.64158 -8.32301 -7.60600 -6.25270 -4.34710 1.97255 2.72387 3.14778 3.25232 3.30180 3.32222 3.84023 4.24817 4.28208 4.37439 4.62334 4.67514 4.97782 5.01713 5.07459 5.16683 5.39899 5.47050 5.59966 5.64284 5.71273 5.72528 5.83787 5.87719 6.06318 6.07529 6.16191 6.25496 6.55867 6.75418 6.78119 6.93254 7.02025 7.28062 7.37399 7.65689 7.68209 7.78416 8.04842 8.59579 8.69545 9.20663 9.34808 9.50669 10.81986 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.033044 B = 0.003196 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.140321 B = 8758.799537 C = 9030.627405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C -0.093 4.093 4 H 0.116 0.884 5 C 0.155 3.845 6 N -0.746 5.746 7 C 0.720 3.280 8 O -0.599 6.599 9 N -0.627 5.627 10 C 0.106 3.894 11 C -0.116 4.116 12 C 0.250 3.750 13 O -0.584 6.584 14 C -0.538 4.538 15 H 0.066 0.934 16 C 0.071 3.929 17 N -0.894 5.894 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.112 3.888 23 C 0.475 3.525 24 O -0.496 6.496 25 O -0.513 6.513 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.390 0.610 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.386 0.614 39 H 0.272 0.728 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.140 -7.230 4.296 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.150 4.150 3 C -0.112 4.112 4 H 0.133 0.867 5 C 0.030 3.970 6 N -0.403 5.403 7 C 0.422 3.578 8 O -0.478 6.478 9 N -0.363 5.363 10 C -0.017 4.017 11 C -0.154 4.154 12 C 0.209 3.791 13 O -0.394 6.394 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.533 5.533 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.010 4.010 23 C 0.316 3.684 24 O -0.382 6.382 25 O -0.326 6.326 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.224 0.776 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -18.659 -7.923 4.164 20.695 hybrid contribution 0.904 0.909 0.712 1.467 sum -17.755 -7.014 4.876 19.703 Atomic orbital electron populations 1.21995 0.94355 1.02040 1.03554 1.21449 0.97157 0.92533 1.03910 1.21514 0.97371 0.98561 0.93790 0.86660 1.20985 0.89010 0.83950 1.03063 1.44939 1.06462 1.07838 1.81042 1.15429 0.81799 0.82554 0.78021 1.90875 1.54479 1.42926 1.59493 1.47854 1.10253 1.02955 1.75257 1.21906 0.94196 0.86547 0.99067 1.22594 0.96421 0.95538 1.00858 1.19618 0.91035 0.88990 0.79472 1.86053 1.46107 1.86338 1.20940 1.21463 0.91673 1.11022 1.33484 0.91545 1.25086 0.99411 0.94710 0.94047 1.69561 1.26149 1.23299 1.34334 0.86439 0.81433 0.80152 0.78734 1.20023 1.21073 1.20016 1.23183 0.77995 0.99374 1.00428 1.23470 0.79994 0.76695 0.88197 1.90821 1.51435 1.44714 1.51266 1.84607 1.28417 1.74170 1.45365 0.92459 0.90494 0.92423 0.89695 0.91023 0.90171 0.90906 0.77640 0.92809 0.93259 0.90824 0.90523 0.76189 0.91827 0.92537 0.90106 0.73572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.55 37.15 0.35 -0.62 16 2 C -0.11 -0.77 5.39 -26.73 -0.14 -0.91 16 3 C -0.09 -0.82 2.37 -91.77 -0.22 -1.04 16 4 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.15 2.00 4.63 -4.04 -0.02 1.98 16 6 N -0.75 -12.02 4.77 -65.23 -0.31 -12.33 16 7 C 0.72 15.49 8.49 -86.91 -0.74 14.75 16 8 O -0.60 -15.07 16.60 5.29 0.09 -14.98 16 9 N -0.63 -13.69 3.32 -176.09 -0.59 -14.27 16 10 C 0.11 1.96 6.15 -3.06 -0.02 1.94 16 11 C -0.12 -2.36 6.12 -24.90 -0.15 -2.52 16 12 C 0.25 6.18 0.89 -89.50 -0.08 6.10 16 13 O -0.58 -15.25 13.19 -35.23 -0.46 -15.72 16 14 C -0.54 -14.18 8.25 -34.44 -0.28 -14.47 16 15 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 16 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 17 N -0.89 -24.21 10.72 55.43 0.59 -23.61 16 18 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 22 C 0.11 2.81 5.65 -2.41 -0.01 2.80 16 23 C 0.48 4.73 7.27 36.01 0.26 5.00 16 24 O -0.50 -7.01 16.05 -18.75 -0.30 -7.31 16 25 O -0.51 -3.47 10.57 -39.27 -0.41 -3.88 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.49 5.46 -51.93 -0.28 0.21 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.07 7.96 -51.93 -0.41 0.65 16 33 H 0.39 5.53 7.14 -40.82 -0.29 5.24 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.47 8.02 -51.93 -0.42 1.06 16 38 H 0.39 10.45 6.93 45.56 0.32 10.76 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.06 1.45 8.04 -51.93 -0.42 1.04 16 41 H 0.08 2.27 7.64 -51.93 -0.40 1.87 16 42 H 0.41 1.34 9.10 45.56 0.41 1.76 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -33.61 345.76 -7.19 -40.79 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -4.84 Total: 15.77 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -1.14 Total: 14.79 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.30 Total: -50.21 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.09 Total: -41.90 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.61 -7.19 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573798924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.951 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds