Wall clock time and date at job start Fri Apr 10 2020 20:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47381 * 2 1 4 4 H 1.09001 * 109.47112 * 305.00345 * 3 2 1 5 5 C 1.53003 * 109.47014 * 184.99667 * 3 2 1 6 6 N 1.46499 * 109.46708 * 174.99880 * 5 3 2 7 7 C 1.34784 * 119.99893 * 180.02562 * 6 5 3 8 8 O 1.21588 * 119.99858 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99935 * 179.72905 * 7 6 5 10 10 C 1.47028 * 125.64925 * 0.02562 * 9 7 6 11 11 C 1.54323 * 107.26964 * 181.02625 * 10 9 7 12 12 C 1.55159 * 102.94419 * 22.19094 * 11 10 9 13 13 O 1.42903 * 111.00151 * 82.57223 * 12 11 10 14 14 C 1.50695 * 111.00487 * 206.38380 * 12 11 10 15 15 H 1.07997 * 120.00322 * 0.02562 * 14 12 11 16 16 C 1.37886 * 119.99830 * 180.02562 * 14 12 11 17 17 N 1.31508 * 119.99843 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99711 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47133 * 60.00173 * 18 16 14 20 20 H 1.48503 * 109.46992 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47565 * 299.99818 * 18 16 14 22 22 C 1.47424 * 125.64845 * 179.71487 * 9 7 6 23 23 C 1.50700 * 109.46897 * 65.00191 * 3 2 1 24 24 O 1.20824 * 120.00453 * 120.00140 * 23 3 2 25 25 O 1.34234 * 119.99936 * 299.99677 * 23 3 2 26 26 H 1.09000 * 109.47573 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47125 * 300.00260 * 1 2 3 28 28 H 1.09003 * 109.47094 * 59.99465 * 1 2 3 29 29 H 1.09001 * 109.47125 * 239.99740 * 2 1 3 30 30 H 1.08997 * 109.47101 * 120.00075 * 2 1 3 31 31 H 1.08998 * 109.46692 * 55.00382 * 5 3 2 32 32 H 1.08994 * 109.47584 * 295.00246 * 5 3 2 33 33 H 0.97005 * 120.00261 * 0.02562 * 6 5 3 34 34 H 1.08997 * 109.88118 * 300.44485 * 10 9 7 35 35 H 1.09001 * 109.87916 * 61.60759 * 10 9 7 36 36 H 1.08995 * 110.72048 * 140.55882 * 11 10 9 37 37 H 1.09002 * 110.71755 * 263.65540 * 11 10 9 38 38 H 0.96703 * 114.00285 * 179.97438 * 13 12 11 39 39 H 0.97005 * 119.99794 * 180.02562 * 17 16 14 40 40 H 1.08994 * 110.36962 * 274.74891 * 22 9 7 41 41 H 1.09007 * 110.36287 * 37.06823 * 22 9 7 42 42 H 0.96695 * 116.99660 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5649 1.4442 -0.1256 6 7 4.0433 2.8237 -0.2457 7 6 5.3624 3.0711 -0.3693 8 8 6.1554 2.1494 -0.3807 9 7 5.8021 4.3398 -0.4853 10 6 4.9566 5.5425 -0.4914 11 6 5.8902 6.7581 -0.6712 12 6 7.1520 6.1336 -1.3233 13 8 6.9807 5.9887 -2.7346 14 6 8.3806 6.9490 -1.0122 15 1 8.2989 7.8384 -0.4052 16 6 9.6090 6.5594 -1.5026 17 7 9.7083 5.4765 -2.2422 18 14 11.1319 7.5697 -1.1164 19 1 11.3324 7.6205 0.3542 20 1 12.3168 6.9431 -1.7556 21 1 10.9574 8.9483 -1.6401 22 6 7.2111 4.7518 -0.6207 23 6 1.6414 2.1162 1.2877 24 8 2.4897 2.5530 2.0289 25 8 0.3437 2.2311 1.6113 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8570 0.8799 -1.0112 32 1 4.0029 0.9835 0.7597 33 1 3.4107 3.5590 -0.2363 34 1 4.2483 5.4936 -1.3184 35 1 4.4205 5.6235 0.4542 36 1 5.4388 7.4963 -1.3339 37 1 6.1322 7.2045 0.2933 38 1 7.7439 5.6027 -3.1860 39 1 10.5726 5.2023 -2.5869 40 1 7.6759 4.8423 0.3610 41 1 7.7579 4.0370 -1.2357 42 1 0.1371 2.6712 2.4472 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573798924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:44 Heat of formation + Delta-G solvation = -202.359434 kcal Electronic energy + Delta-G solvation = -25344.240038 eV Core-core repulsion = 21515.971100 eV Total energy + Delta-G solvation = -3828.268938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71641 -41.02559 -39.13775 -37.32731 -36.86034 -36.06888 -34.67463 -34.14642 -31.86625 -30.12838 -29.44720 -27.08831 -25.61556 -24.32906 -23.49989 -21.62223 -21.43515 -20.75515 -19.30413 -19.10520 -18.84550 -18.05826 -17.38562 -16.95960 -16.84758 -16.48982 -16.19970 -15.64080 -15.28493 -14.83715 -14.78463 -14.62772 -14.44588 -14.34538 -13.83628 -13.65781 -13.47366 -13.34451 -13.03864 -12.81393 -12.64534 -12.52931 -12.32232 -12.27898 -12.21715 -12.11060 -11.99476 -11.74623 -11.39312 -11.35052 -11.21780 -10.64012 -10.35260 -10.20198 -9.32975 -8.25180 -6.42309 1.20687 1.43863 1.44721 1.53060 1.67244 2.05883 2.16370 2.38706 3.00592 3.04745 3.41607 3.78976 3.85786 4.00116 4.10802 4.16846 4.31866 4.35837 4.43235 4.57580 4.59346 4.66943 4.74583 4.78942 4.93978 5.03825 5.07988 5.18305 5.28664 5.29605 5.36836 5.44596 5.45625 5.60108 5.64940 5.76809 6.01672 6.14130 6.64472 7.01682 7.03772 7.30237 7.39881 7.55242 8.80433 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.033044 B = 0.003196 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.140321 B = 8758.799537 C = 9030.627405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.083 4.083 4 H 0.140 0.860 5 C 0.150 3.850 6 N -0.725 5.725 7 C 0.711 3.289 8 O -0.645 6.645 9 N -0.634 5.634 10 C 0.109 3.891 11 C -0.110 4.110 12 C 0.235 3.765 13 O -0.588 6.588 14 C -0.557 4.557 15 H 0.071 0.929 16 C 0.024 3.976 17 N -0.918 5.918 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.126 3.874 23 C 0.483 3.517 24 O -0.544 6.544 25 O -0.499 6.499 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.377 0.623 39 H 0.271 0.729 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.556 -6.524 4.557 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.102 4.102 4 H 0.157 0.843 5 C 0.026 3.974 6 N -0.381 5.381 7 C 0.413 3.587 8 O -0.528 6.528 9 N -0.370 5.370 10 C -0.013 4.013 11 C -0.148 4.148 12 C 0.194 3.806 13 O -0.398 6.398 14 C -0.596 4.596 15 H 0.089 0.911 16 C -0.177 4.177 17 N -0.558 5.558 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.192 1.192 22 C 0.002 3.998 23 C 0.327 3.673 24 O -0.434 6.434 25 O -0.312 6.312 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.239 0.761 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.228 0.772 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -21.187 -7.198 4.440 22.813 hybrid contribution 1.570 0.641 0.655 1.818 sum -19.617 -6.557 5.095 21.302 Atomic orbital electron populations 1.21965 0.93228 1.02702 1.03676 1.21475 0.97952 0.90972 1.04329 1.21474 0.94165 1.00298 0.94275 0.84252 1.21165 0.91933 0.82013 1.02270 1.44807 1.04497 1.09693 1.79126 1.15707 0.83192 0.81862 0.77939 1.90833 1.56173 1.44270 1.61488 1.47824 1.09453 1.04257 1.75464 1.22077 0.93587 0.84095 1.01588 1.22593 0.94601 0.96467 1.01134 1.19848 0.93049 0.88907 0.78815 1.86040 1.45647 1.86218 1.21856 1.21810 0.92686 1.11400 1.33669 0.91108 1.25869 1.02234 0.95624 0.93926 1.69681 1.26581 1.24483 1.35021 0.85464 0.77927 0.78859 0.78513 1.19655 1.21062 1.19215 1.22750 0.79651 0.98852 0.98582 1.23578 0.80339 0.75570 0.87844 1.90818 1.52837 1.46978 1.52799 1.84567 1.26368 1.73809 1.46474 0.91613 0.90878 0.91721 0.88532 0.91524 0.89790 0.93032 0.76136 0.90701 0.90156 0.89410 0.89437 0.77197 0.91962 0.94291 0.94232 0.71535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.55 71.98 0.69 -0.73 16 2 C -0.11 -1.23 5.39 30.59 0.16 -1.07 16 3 C -0.08 -1.27 2.37 -11.54 -0.03 -1.30 16 4 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 5 C 0.15 3.77 4.63 86.38 0.40 4.17 16 6 N -0.73 -22.63 4.77 -478.53 -2.28 -24.91 16 7 C 0.71 30.85 8.49 179.05 1.52 32.37 16 8 O -0.64 -33.64 16.60 -3.99 -0.07 -33.71 16 9 N -0.63 -27.67 3.32 -829.30 -2.76 -30.43 16 10 C 0.11 3.76 6.15 86.73 0.53 4.29 16 11 C -0.11 -4.29 6.12 31.78 0.19 -4.09 16 12 C 0.23 11.66 0.89 -10.07 -0.01 11.66 16 13 O -0.59 -31.08 13.19 -148.98 -1.97 -33.05 16 14 C -0.56 -29.50 8.25 25.60 0.21 -29.29 16 15 H 0.07 3.59 7.76 -2.91 -0.02 3.57 16 16 C 0.02 1.28 5.30 84.66 0.45 1.72 16 17 N -0.92 -51.06 10.72 21.45 0.23 -50.83 16 18 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 C 0.13 6.48 5.65 86.93 0.49 6.97 16 23 C 0.48 8.61 7.27 71.24 0.52 9.13 16 24 O -0.54 -14.76 16.05 21.97 0.35 -14.41 16 25 O -0.50 -5.27 10.57 -51.46 -0.54 -5.81 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.72 5.46 -2.39 -0.01 0.70 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.53 7.96 -2.39 -0.02 1.52 16 33 H 0.40 10.51 7.14 -92.70 -0.66 9.85 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.09 3.19 8.02 -2.39 -0.02 3.17 16 38 H 0.38 21.09 6.93 -74.06 -0.51 20.57 16 39 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 40 H 0.04 2.09 8.04 -2.39 -0.02 2.07 16 41 H 0.04 2.33 7.64 -2.38 -0.02 2.31 16 42 H 0.42 1.59 9.10 -74.06 -0.67 0.91 16 Total: -1.00 -75.20 345.76 -0.66 -75.86 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.79 Total: 39.10 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: 5.13 Total: 33.83 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.81 Total: -106.17 kcal Atomic # 8 Polarization: -84.76 SS G_CDS: -2.22 Total: -86.98 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -75.20 -0.66 -75.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573798924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.499 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds