Wall clock time and date at job start Fri Apr 10 2020 20:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00471 * 2 1 4 4 H 1.48502 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46835 * 299.99680 * 3 2 1 6 6 H 1.48493 * 109.47417 * 59.99682 * 3 2 1 7 7 C 1.37883 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00208 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.38276 * 119.93113 * 90.00123 * 10 9 7 12 12 C 1.38112 * 120.07260 * 180.02562 * 11 10 9 13 13 C 1.38872 * 119.92593 * 0.02562 * 12 11 10 14 14 N 1.39927 * 120.06539 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00327 * 33.08546 * 14 13 12 16 16 O 1.21289 * 120.00269 * 5.13801 * 15 14 13 17 17 C 1.50699 * 120.00096 * 185.13420 * 15 14 13 18 18 H 1.09000 * 110.54847 * 40.05604 * 17 15 14 19 19 C 1.54836 * 110.61475 * 163.08499 * 17 15 14 20 20 C 1.55842 * 103.52103 * 118.51146 * 19 17 15 21 21 H 1.09000 * 116.15684 * 159.22955 * 20 19 17 22 22 C 1.55848 * 105.03203 * 288.27246 * 20 19 17 23 23 C 1.54836 * 103.51948 * 71.72641 * 22 20 19 24 24 C 1.55842 * 110.61720 * 277.18449 * 17 15 14 25 25 H 1.09008 * 115.58040 * 82.60466 * 24 17 15 26 26 N 1.50646 * 101.03133 * 208.49719 * 24 17 15 27 27 C 1.38865 * 119.86190 * 0.27434 * 13 12 11 28 28 C 1.38113 * 119.92574 * 359.42945 * 27 13 12 29 29 H 0.97005 * 119.99380 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46998 * 59.99556 * 9 7 2 31 31 H 1.09002 * 109.46659 * 300.00245 * 9 7 2 32 32 H 1.08002 * 119.96418 * 0.02562 * 11 10 9 33 33 H 1.08000 * 120.03404 * 180.02562 * 12 11 10 34 34 H 0.97001 * 119.99961 * 213.07795 * 14 13 12 35 35 H 1.08999 * 110.61606 * 237.01986 * 19 17 15 36 36 H 1.09010 * 110.61211 * 0.02562 * 19 17 15 37 37 H 1.09001 * 110.61569 * 190.23443 * 22 20 19 38 38 H 1.08996 * 110.61692 * 313.21807 * 22 20 19 39 39 H 1.08993 * 110.61982 * 241.49304 * 23 22 20 40 40 H 1.09009 * 110.61492 * 118.50672 * 23 22 20 41 41 H 1.00901 * 111.00297 * 297.65023 * 26 24 17 42 42 H 1.07997 * 120.03993 * 179.70305 * 27 13 12 43 43 H 1.08005 * 119.96645 * 180.29147 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2300 -3.6448 0.0018 11 6 2.6774 -4.1687 1.2007 12 6 3.5752 -5.2182 1.2053 13 6 4.0290 -5.7469 0.0040 14 7 4.9382 -6.8105 0.0053 15 6 4.8903 -7.7369 0.9830 16 8 4.0026 -7.7019 1.8087 17 6 5.9398 -8.8163 1.0503 18 1 6.9232 -8.4090 0.8155 19 6 5.9431 -9.4871 2.4458 20 6 5.5907 -10.9733 2.1365 21 1 5.8712 -11.7020 2.8971 22 6 4.0827 -10.9577 1.7433 23 6 4.0794 -10.2869 0.3478 24 6 5.5858 -9.9869 0.0843 25 1 5.8714 -9.8402 -0.9574 26 7 6.2383 -11.1483 0.7876 27 6 3.5827 -5.2144 -1.1983 28 6 2.6801 -4.1690 -1.1960 29 1 -0.4849 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6238 -2.5566 0.8903 32 1 2.3243 -3.7568 2.1346 33 1 3.9238 -5.6272 2.1421 34 1 5.6029 -6.8812 -0.6977 35 1 6.9293 -9.4141 2.9044 36 1 5.1853 -9.0391 3.0887 37 1 3.6916 -11.9733 1.6818 38 1 3.5067 -10.3661 2.4548 39 1 3.5018 -9.3628 0.3676 40 1 3.6867 -10.9700 -0.4054 41 1 7.2374 -11.0203 0.8468 42 1 3.9374 -5.6202 -2.1341 43 1 2.3289 -3.7574 -2.1308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:47 Heat of formation + Delta-G solvation = 3.059751 kcal Electronic energy + Delta-G solvation = -23811.719397 eV Core-core repulsion = 20435.500118 eV Total energy + Delta-G solvation = -3376.219280 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52666 -39.55230 -37.88519 -34.91859 -33.05774 -31.31796 -30.64726 -30.33908 -29.88635 -29.68147 -26.63589 -23.91883 -22.66686 -22.37874 -21.37847 -20.90649 -20.15539 -19.24764 -17.54782 -17.42857 -16.83101 -16.40092 -16.30711 -15.06910 -14.83894 -14.53408 -14.23563 -13.88691 -13.23788 -13.19455 -13.05181 -12.87531 -12.61665 -12.49985 -12.35763 -12.23443 -12.01393 -11.80847 -11.44157 -11.32212 -11.24382 -11.06131 -10.83739 -10.60593 -10.38385 -10.37172 -10.11877 -9.88346 -9.47596 -9.28164 -9.12474 -8.43395 -8.31291 -7.40157 -6.04401 -4.08443 1.80899 2.03532 2.64307 3.02309 3.28638 3.36293 3.41086 3.69386 4.15300 4.19010 4.36956 4.46655 4.53346 4.63070 4.76466 4.86863 4.93154 5.01411 5.21518 5.29636 5.34122 5.37742 5.41004 5.54011 5.61835 5.82138 5.85749 5.87480 5.91527 5.95440 6.04786 6.09503 6.18048 6.23040 6.62002 6.75298 6.84611 6.88117 7.14744 7.18870 7.46737 7.51206 7.68910 7.85618 7.91495 8.13594 8.31870 8.97162 9.55344 11.05248 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.038489 B = 0.002692 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.305388 B =10398.026385 C =10420.189024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.041 4.041 11 C -0.108 4.108 12 C -0.117 4.117 13 C 0.104 3.896 14 N -0.667 5.667 15 C 0.523 3.477 16 O -0.516 6.516 17 C -0.147 4.147 18 H 0.095 0.905 19 C -0.143 4.143 20 C 0.049 3.951 21 H 0.116 0.884 22 C -0.112 4.112 23 C -0.123 4.123 24 C 0.063 3.937 25 H 0.119 0.881 26 N -0.646 5.646 27 C -0.143 4.143 28 C -0.108 4.108 29 H 0.261 0.739 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.404 0.596 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.331 0.669 42 H 0.114 0.886 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.787 -21.373 0.541 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.042 4.042 11 C -0.127 4.127 12 C -0.137 4.137 13 C 0.012 3.988 14 N -0.312 5.312 15 C 0.310 3.690 16 O -0.391 6.391 17 C -0.170 4.170 18 H 0.114 0.886 19 C -0.183 4.183 20 C -0.060 4.060 21 H 0.134 0.866 22 C -0.150 4.150 23 C -0.161 4.161 24 C -0.048 4.048 25 H 0.137 0.863 26 N -0.272 5.272 27 C -0.164 4.164 28 C -0.127 4.127 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.239 0.761 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.145 0.855 42 H 0.132 0.868 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.650 -21.925 0.854 25.327 hybrid contribution 1.357 1.908 -0.040 2.342 sum 14.007 -20.017 0.815 24.445 Atomic orbital electron populations 1.69972 1.06034 1.26697 1.50591 1.25023 0.94885 0.99269 0.95232 0.86484 0.80117 0.83515 0.77627 1.19690 1.20950 1.20939 1.21102 0.93063 0.89860 1.50837 0.92431 1.18360 0.92588 0.89600 0.98421 1.20711 0.96412 0.95231 0.91841 1.20997 0.97498 0.95617 0.98542 1.20966 0.99488 0.96626 0.96629 1.17517 0.96098 0.90822 0.94400 1.43432 1.34573 1.24548 1.28598 1.20293 0.86199 0.81453 0.81083 1.90715 1.35421 1.73517 1.39469 1.23183 0.98626 0.95983 0.99204 0.88633 1.23332 1.03103 0.96362 0.95462 1.24319 0.95630 0.94629 0.91458 0.86597 1.22568 0.94815 1.00760 0.96874 1.22728 0.94304 1.01464 0.97623 1.24268 0.96326 0.87007 0.97151 0.86331 1.66001 1.09172 1.40319 1.11701 1.20737 1.00303 0.99824 0.95499 1.20892 0.97307 0.95886 0.98567 0.92893 0.95293 0.95296 0.86109 0.85948 0.76106 0.91138 0.88484 0.91432 0.90531 0.90455 0.91096 0.85465 0.86828 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.29 9.09 -34.44 -0.31 -14.60 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.05 1.22 5.10 -29.03 -0.15 1.07 16 10 C -0.04 -0.91 5.07 -104.59 -0.53 -1.44 16 11 C -0.11 -2.20 9.69 -39.61 -0.38 -2.58 16 12 C -0.12 -2.14 8.66 -39.39 -0.34 -2.48 16 13 C 0.10 1.67 6.28 -83.70 -0.53 1.14 16 14 N -0.67 -7.99 5.34 -9.87 -0.05 -8.04 16 15 C 0.52 6.37 5.15 -10.99 -0.06 6.31 16 16 O -0.52 -8.16 12.18 5.55 0.07 -8.09 16 17 C -0.15 -1.24 3.19 -89.29 -0.28 -1.52 16 18 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 19 C -0.14 -1.22 5.88 -24.25 -0.14 -1.36 16 20 C 0.05 0.39 5.59 -62.56 -0.35 0.04 16 21 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.11 -1.07 6.43 -24.24 -0.16 -1.23 16 23 C -0.12 -1.23 6.13 -24.24 -0.15 -1.38 16 24 C 0.06 0.50 5.33 -62.56 -0.33 0.17 16 25 H 0.12 0.75 8.14 -51.92 -0.42 0.33 16 26 N -0.65 -4.94 7.71 -88.23 -0.68 -5.62 16 27 C -0.14 -2.31 9.96 -39.40 -0.39 -2.70 16 28 C -0.11 -2.07 9.69 -39.61 -0.38 -2.45 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.12 2.21 6.40 -52.49 -0.34 1.87 16 34 H 0.40 3.42 8.82 -40.82 -0.36 3.06 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 1.06 6.35 -51.92 -0.33 0.73 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.83 7.82 -51.93 -0.41 0.43 16 39 H 0.08 0.96 5.64 -51.93 -0.29 0.67 16 40 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.33 1.99 8.66 -39.29 -0.34 1.65 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -31.94 345.02 -10.59 -42.53 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.25 Total: 4.76 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -4.59 Total: -21.50 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.00 Total: -39.38 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.07 Total: -8.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.94 -10.59 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.588 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds