Wall clock time and date at job start Fri Apr 10 2020 20:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00471 * 2 1 4 4 H 1.48502 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46835 * 299.99680 * 3 2 1 6 6 H 1.48493 * 109.47417 * 59.99682 * 3 2 1 7 7 C 1.37883 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00208 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.38276 * 119.93113 * 90.00123 * 10 9 7 12 12 C 1.38112 * 120.07260 * 180.02562 * 11 10 9 13 13 C 1.38872 * 119.92593 * 0.02562 * 12 11 10 14 14 N 1.39927 * 120.06539 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00327 * 33.08546 * 14 13 12 16 16 O 1.21289 * 120.00269 * 5.13801 * 15 14 13 17 17 C 1.50699 * 120.00096 * 185.13420 * 15 14 13 18 18 H 1.09000 * 110.54847 * 40.05604 * 17 15 14 19 19 C 1.54836 * 110.61475 * 163.08499 * 17 15 14 20 20 C 1.55842 * 103.52103 * 118.51146 * 19 17 15 21 21 H 1.09000 * 116.15684 * 159.22955 * 20 19 17 22 22 C 1.55848 * 105.03203 * 288.27246 * 20 19 17 23 23 C 1.54836 * 103.51948 * 71.72641 * 22 20 19 24 24 C 1.55842 * 110.61720 * 277.18449 * 17 15 14 25 25 H 1.09008 * 115.58040 * 82.60466 * 24 17 15 26 26 N 1.50646 * 101.03133 * 208.49719 * 24 17 15 27 27 C 1.38865 * 119.86190 * 0.27434 * 13 12 11 28 28 C 1.38113 * 119.92574 * 359.42945 * 27 13 12 29 29 H 0.97005 * 119.99380 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46998 * 59.99556 * 9 7 2 31 31 H 1.09002 * 109.46659 * 300.00245 * 9 7 2 32 32 H 1.08002 * 119.96418 * 0.02562 * 11 10 9 33 33 H 1.08000 * 120.03404 * 180.02562 * 12 11 10 34 34 H 0.97001 * 119.99961 * 213.07795 * 14 13 12 35 35 H 1.08999 * 110.61606 * 237.01986 * 19 17 15 36 36 H 1.09010 * 110.61211 * 0.02562 * 19 17 15 37 37 H 1.09001 * 110.61569 * 190.23443 * 22 20 19 38 38 H 1.08996 * 110.61692 * 313.21807 * 22 20 19 39 39 H 1.08993 * 110.61982 * 241.49304 * 23 22 20 40 40 H 1.09009 * 110.61492 * 118.50672 * 23 22 20 41 41 H 1.00901 * 111.00297 * 297.65023 * 26 24 17 42 42 H 1.07997 * 120.03993 * 179.70305 * 27 13 12 43 43 H 1.08005 * 119.96645 * 180.29147 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2300 -3.6448 0.0018 11 6 2.6774 -4.1687 1.2007 12 6 3.5752 -5.2182 1.2053 13 6 4.0290 -5.7469 0.0040 14 7 4.9382 -6.8105 0.0053 15 6 4.8903 -7.7369 0.9830 16 8 4.0026 -7.7019 1.8087 17 6 5.9398 -8.8163 1.0503 18 1 6.9232 -8.4090 0.8155 19 6 5.9431 -9.4871 2.4458 20 6 5.5907 -10.9733 2.1365 21 1 5.8712 -11.7020 2.8971 22 6 4.0827 -10.9577 1.7433 23 6 4.0794 -10.2869 0.3478 24 6 5.5858 -9.9869 0.0843 25 1 5.8714 -9.8402 -0.9574 26 7 6.2383 -11.1483 0.7876 27 6 3.5827 -5.2144 -1.1983 28 6 2.6801 -4.1690 -1.1960 29 1 -0.4849 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6238 -2.5566 0.8903 32 1 2.3243 -3.7568 2.1346 33 1 3.9238 -5.6272 2.1421 34 1 5.6029 -6.8812 -0.6977 35 1 6.9293 -9.4141 2.9044 36 1 5.1853 -9.0391 3.0887 37 1 3.6916 -11.9733 1.6818 38 1 3.5067 -10.3661 2.4548 39 1 3.5018 -9.3628 0.3676 40 1 3.6867 -10.9700 -0.4054 41 1 7.2374 -11.0203 0.8468 42 1 3.9374 -5.6202 -2.1341 43 1 2.3289 -3.7574 -2.1308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:47 Heat of formation + Delta-G solvation = -18.044075 kcal Electronic energy + Delta-G solvation = -23812.634528 eV Core-core repulsion = 20435.500118 eV Total energy + Delta-G solvation = -3377.134410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.36346 -40.68077 -39.13699 -36.27462 -34.99308 -32.58127 -31.80448 -31.63597 -30.82276 -30.40530 -28.36261 -25.45808 -24.04360 -23.68325 -22.30209 -21.84554 -21.41161 -20.09253 -18.63637 -18.48853 -18.23522 -17.71609 -17.24143 -16.80640 -16.08374 -15.94032 -15.59819 -15.04422 -14.66415 -14.54868 -14.30131 -13.90708 -13.76422 -13.64373 -13.36904 -13.29534 -13.12971 -12.98824 -12.90208 -12.64390 -12.54463 -12.46495 -12.06571 -11.94537 -11.83447 -11.64789 -11.54421 -11.15582 -11.00656 -10.79204 -10.61939 -9.82280 -9.75489 -8.87651 -8.19442 -6.34379 0.41881 0.54902 1.38995 1.39460 1.52979 1.59384 2.03611 2.39257 2.98368 3.04978 3.09797 3.46608 3.54409 3.79890 3.87845 4.03099 4.11141 4.13075 4.17455 4.27519 4.33299 4.36439 4.51251 4.60148 4.63303 4.69032 4.73210 4.80160 4.98339 5.08383 5.09516 5.15335 5.18992 5.22654 5.31149 5.32783 5.40646 5.48522 5.52486 5.59473 5.74509 6.06547 6.10878 6.23644 6.38483 6.48079 6.78622 7.17511 7.34255 8.88828 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.038489 B = 0.002692 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.305388 B =10398.026385 C =10420.189024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.075 4.075 11 C -0.121 4.121 12 C -0.124 4.124 13 C 0.122 3.878 14 N -0.655 5.655 15 C 0.521 3.479 16 O -0.556 6.556 17 C -0.138 4.138 18 H 0.130 0.870 19 C -0.144 4.144 20 C 0.056 3.944 21 H 0.133 0.867 22 C -0.118 4.118 23 C -0.129 4.129 24 C 0.073 3.927 25 H 0.145 0.855 26 N -0.645 5.645 27 C -0.129 4.129 28 C -0.113 4.113 29 H 0.265 0.735 30 H 0.006 0.994 31 H -0.002 1.002 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.427 0.573 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.346 0.654 42 H 0.160 0.840 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.509 -22.857 -0.847 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.076 4.076 11 C -0.140 4.140 12 C -0.144 4.144 13 C 0.028 3.972 14 N -0.302 5.302 15 C 0.310 3.690 16 O -0.433 6.433 17 C -0.160 4.160 18 H 0.148 0.852 19 C -0.184 4.184 20 C -0.053 4.053 21 H 0.151 0.849 22 C -0.156 4.156 23 C -0.167 4.167 24 C -0.038 4.038 25 H 0.163 0.837 26 N -0.272 5.272 27 C -0.148 4.148 28 C -0.132 4.132 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.016 0.984 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.266 0.734 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.162 0.838 42 H 0.177 0.823 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.420 -23.437 -0.553 28.622 hybrid contribution 0.181 2.214 0.428 2.263 sum 16.600 -21.223 -0.126 26.944 Atomic orbital electron populations 1.70099 1.07743 1.27899 1.51424 1.25968 0.95788 1.03232 0.94604 0.85356 0.78937 0.78573 0.77947 1.18792 1.19967 1.20352 1.21410 0.93105 0.91136 1.50764 0.92622 1.18093 0.92896 0.91287 0.95743 1.20387 0.97741 0.95669 0.93758 1.20909 0.98655 0.96780 0.97657 1.20973 0.99414 0.96171 0.97887 1.17591 0.95339 0.90785 0.93505 1.43382 1.34144 1.23177 1.29454 1.21045 0.86279 0.81709 0.79968 1.90719 1.37202 1.74484 1.40935 1.23249 0.98592 0.94720 0.99475 0.85227 1.23336 1.03327 0.96491 0.95213 1.24335 0.94139 0.94719 0.92153 0.84948 1.22563 0.96243 1.00386 0.96377 1.22711 0.95963 1.00148 0.97871 1.24355 0.94475 0.86598 0.98330 0.83733 1.65960 1.10231 1.39921 1.11110 1.21046 0.98434 0.98075 0.97290 1.20990 0.97964 0.96759 0.97487 0.92569 0.97525 0.98406 0.87401 0.85972 0.73447 0.88947 0.91436 0.91145 0.92886 0.93301 0.90899 0.83776 0.82268 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 2 C 0.00 0.11 5.46 84.66 0.46 0.58 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.53 -30.54 9.09 25.60 0.23 -30.31 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.06 3.13 5.10 29.10 0.15 3.28 16 10 C -0.07 -3.43 5.07 -19.85 -0.10 -3.53 16 11 C -0.12 -5.20 9.69 22.25 0.22 -4.98 16 12 C -0.12 -4.58 8.66 22.39 0.19 -4.39 16 13 C 0.12 3.68 6.28 38.15 0.24 3.92 16 14 N -0.66 -13.62 5.34 -303.51 -1.62 -15.25 16 15 C 0.52 11.63 5.15 87.66 0.45 12.09 16 16 O -0.56 -17.58 12.18 -3.06 -0.04 -17.62 16 17 C -0.14 -1.85 3.19 -9.93 -0.03 -1.88 16 18 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 19 C -0.14 -2.11 5.88 32.20 0.19 -1.92 16 20 C 0.06 0.75 5.59 46.15 0.26 1.01 16 21 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 22 C -0.12 -2.17 6.43 32.21 0.21 -1.96 16 23 C -0.13 -2.40 6.13 32.21 0.20 -2.20 16 24 C 0.07 0.89 5.33 46.15 0.25 1.13 16 25 H 0.15 1.07 8.14 -2.38 -0.02 1.05 16 26 N -0.64 -7.38 7.71 -433.07 -3.34 -10.72 16 27 C -0.13 -3.81 9.96 22.39 0.22 -3.59 16 28 C -0.11 -4.33 9.69 22.25 0.22 -4.11 16 29 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 30 H 0.01 0.37 8.09 -2.39 -0.02 0.35 16 31 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 32 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 33 H 0.12 4.49 6.40 -2.91 -0.02 4.47 16 34 H 0.43 5.16 8.82 -92.71 -0.82 4.34 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.45 6.35 -2.38 -0.02 1.43 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 1.21 7.82 -2.39 -0.02 1.19 16 39 H 0.05 1.20 5.64 -2.39 -0.01 1.18 16 40 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 41 H 0.35 2.49 8.66 -89.69 -0.78 1.71 16 42 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -73.55 345.02 0.10 -73.44 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.56 Total: 17.02 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 3.35 Total: -36.87 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -4.68 Total: -82.66 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.04 Total: -17.62 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -73.55 0.10 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.399 kcal (2) G-P(sol) polarization free energy of solvation -73.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds