Wall clock time and date at job start Fri Apr 10 2020 20:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86795 * 120.00340 * 2 1 4 4 H 1.48506 * 109.47361 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47447 * 119.99602 * 3 2 1 7 7 C 1.39949 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99590 * 163.68897 * 7 2 1 9 9 C 1.41393 * 120.00374 * 343.68295 * 7 2 1 10 10 C 1.40736 * 120.24095 * 334.03946 * 9 7 2 11 11 C 1.37593 * 119.74514 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24783 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.50271 * 359.97438 * 12 11 10 14 14 C 1.37641 * 120.24297 * 0.02562 * 13 12 11 15 15 C 1.50708 * 120.12341 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47129 * 264.99985 * 15 14 13 17 17 O 1.21284 * 119.99750 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00167 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00058 * 179.97438 * 18 16 15 20 20 H 1.08994 * 110.34428 * 325.70700 * 19 18 16 21 21 C 1.54562 * 110.37806 * 87.97864 * 19 18 16 22 22 N 1.48619 * 104.64395 * 142.56437 * 21 19 18 23 23 C 1.48730 * 104.35746 * 320.91913 * 22 21 19 24 24 C 1.53629 * 110.38106 * 203.43078 * 19 18 16 25 25 C 1.52301 * 121.44454 * 97.15237 * 24 19 18 26 26 C 1.52276 * 121.47798 * 24.91790 * 24 19 18 27 27 H 0.97000 * 119.99561 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12690 * 0.03638 * 10 9 7 29 29 H 1.08003 * 119.87928 * 180.27220 * 11 10 9 30 30 H 1.08002 * 119.75343 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.87592 * 180.02562 * 13 12 11 32 32 H 1.09004 * 109.46858 * 25.00085 * 15 14 13 33 33 H 1.08994 * 109.46916 * 145.00401 * 15 14 13 34 34 H 0.97003 * 119.99862 * 0.02562 * 18 16 15 35 35 H 1.08997 * 110.40590 * 261.35410 * 21 19 18 36 36 H 1.09005 * 110.40162 * 23.66044 * 21 19 18 37 37 H 1.00898 * 111.00142 * 201.28250 * 22 21 19 38 38 H 1.09003 * 110.44988 * 157.55661 * 23 22 21 39 39 H 1.09004 * 110.44928 * 279.97444 * 23 22 21 40 40 H 1.09003 * 117.51713 * 356.56153 * 25 24 19 41 41 H 1.09002 * 117.51490 * 141.68369 * 25 24 19 42 42 H 1.09008 * 117.51754 * 218.26028 * 26 24 19 43 43 H 1.08999 * 117.52206 * 3.33521 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0553 -1.2307 -0.2633 9 6 1.3437 -2.4120 0.3429 10 6 0.2125 -2.3816 1.1798 11 6 -0.4257 -3.5555 1.5079 12 6 0.0413 -4.7653 1.0170 13 6 1.1538 -4.8071 0.1912 14 6 1.8079 -3.6452 -0.1502 15 6 3.0175 -3.6939 -1.0478 16 6 4.2670 -3.7244 -0.2058 17 8 4.1834 -3.7087 1.0041 18 7 5.4772 -3.7702 -0.7971 19 6 6.6918 -3.7993 0.0214 20 1 6.5531 -3.2079 0.9264 21 6 7.0632 -5.2557 0.3818 22 7 8.5480 -5.2894 0.3271 23 6 8.8931 -4.4421 -0.8455 24 6 7.8913 -3.2743 -0.7822 25 6 8.3595 -1.8303 -0.6589 26 6 7.7067 -2.3203 -1.9546 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1532 -1.4403 1.5628 29 1 -1.2965 -3.5342 2.1464 30 1 -0.4656 -5.6820 1.2800 31 1 1.5086 -5.7549 -0.1858 32 1 2.9746 -4.5899 -1.6670 33 1 3.0316 -2.8110 -1.6867 34 1 5.5440 -3.7832 -1.7648 35 1 6.7144 -5.4997 1.3852 36 1 6.6386 -5.9473 -0.3459 37 1 8.8840 -6.2327 0.2030 38 1 9.9146 -4.0713 -0.7600 39 1 8.7692 -5.0042 -1.7712 40 1 7.7770 -1.1647 -0.0219 41 1 9.4337 -1.6462 -0.6745 42 1 8.3515 -2.4583 -2.8226 43 1 6.6948 -1.9775 -2.1705 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:51 Heat of formation + Delta-G solvation = 11.205680 kcal Electronic energy + Delta-G solvation = -24376.184025 eV Core-core repulsion = 21000.317979 eV Total energy + Delta-G solvation = -3375.866046 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11771 -38.55648 -37.15726 -35.03399 -33.60666 -33.56726 -31.67277 -29.43521 -28.46238 -26.77173 -26.11623 -24.87898 -22.68711 -21.97756 -20.90069 -20.36538 -19.52777 -19.02656 -17.15655 -16.78275 -16.41056 -15.61295 -15.25995 -15.12203 -14.69743 -14.51637 -14.25298 -13.84296 -13.44182 -13.35222 -13.16269 -12.81429 -12.55472 -12.12403 -11.95511 -11.70023 -11.61834 -11.54013 -11.14841 -11.04754 -11.00677 -10.95946 -10.65730 -10.52694 -10.38434 -10.15021 -9.45794 -9.35279 -9.14718 -9.10988 -8.82741 -8.68877 -7.28211 -7.26007 -6.70960 -4.31517 2.81852 2.98585 3.07361 3.10691 3.30194 3.33534 3.36041 3.84845 3.95447 4.15841 4.25682 4.64530 4.69307 4.71088 4.83598 5.16174 5.31088 5.41523 5.48612 5.51441 5.59744 5.71308 5.80748 5.82157 5.96629 5.96863 6.02471 6.07771 6.20868 6.31120 6.39472 6.46143 6.53906 6.82863 6.87038 7.07586 7.11393 7.32580 7.45393 7.66992 7.90975 7.98551 8.10405 8.16185 8.34536 8.67634 8.88008 8.94598 9.04697 10.23311 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.004982 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.577555 B = 5618.385407 C = 7216.413716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.073 0.927 9 C 0.130 3.870 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.070 4.070 16 C 0.515 3.485 17 O -0.517 6.517 18 N -0.739 5.739 19 C 0.178 3.822 20 H 0.098 0.902 21 C 0.028 3.972 22 N -0.662 5.662 23 C 0.074 3.926 24 C -0.145 4.145 25 C -0.153 4.153 26 C -0.165 4.165 27 H 0.280 0.720 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.395 0.605 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.337 0.663 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.148 -4.905 -5.923 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.183 4.183 15 C -0.110 4.110 16 C 0.302 3.698 17 O -0.391 6.391 18 N -0.393 5.393 19 C 0.072 3.928 20 H 0.116 0.884 21 C -0.102 4.102 22 N -0.291 5.291 23 C -0.056 4.056 24 C -0.147 4.147 25 C -0.191 4.191 26 C -0.203 4.203 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.229 0.771 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.152 0.848 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.990 -4.240 -4.473 15.287 hybrid contribution 0.118 0.163 -1.242 1.258 sum 14.108 -4.077 -5.716 15.759 Atomic orbital electron populations 1.69812 1.07447 1.29119 1.35744 1.25867 0.94687 1.01069 0.92369 0.86465 0.80243 0.80656 0.79932 1.19119 1.20336 1.18889 1.19424 0.97103 0.90972 1.41127 0.90895 1.17321 0.90758 0.91247 0.87948 1.21291 0.99039 0.96651 1.00847 1.20675 0.98634 0.93478 0.99784 1.20302 1.01586 0.96152 1.07841 1.20289 0.95948 0.95493 0.98221 1.19046 0.99268 0.94052 1.05917 1.20265 0.90589 1.02700 0.97457 1.21287 0.84319 0.74620 0.89525 1.90688 1.86676 1.46975 1.14712 1.46245 1.05270 1.78101 1.09681 1.20901 0.82400 0.95170 0.94295 0.88375 1.23377 0.87843 0.96760 1.02252 1.63687 1.10111 1.15364 1.39915 1.22344 0.98207 0.92849 0.92166 1.21882 0.98042 0.91983 1.02746 1.22905 1.00952 0.95016 1.00178 1.22905 1.02884 1.02494 0.91987 0.90937 0.86560 0.89602 0.89703 0.89840 0.90718 0.88633 0.77068 0.89378 0.93602 0.84753 0.90077 0.93696 0.88298 0.88477 0.88528 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.64 10.97 55.55 0.61 -20.03 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.90 18.98 29.59 -169.99 -5.03 13.95 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.46 -12.05 8.14 -37.74 -0.31 -12.35 16 8 H 0.07 1.87 6.68 -52.48 -0.35 1.52 16 9 C 0.13 3.48 5.56 -106.83 -0.59 2.89 16 10 C -0.16 -4.29 8.68 -38.87 -0.34 -4.63 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 12 C -0.24 -5.64 10.05 -39.29 -0.39 -6.03 16 13 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.07 -1.37 5.18 -29.03 -0.15 -1.52 16 16 C 0.51 9.91 7.46 -10.99 -0.08 9.83 16 17 O -0.52 -12.34 15.71 5.55 0.09 -12.25 16 18 N -0.74 -10.71 4.65 -52.70 -0.25 -10.95 16 19 C 0.18 2.49 3.24 -66.78 -0.22 2.27 16 20 H 0.10 1.68 7.61 -51.93 -0.39 1.28 16 21 C 0.03 0.36 7.20 -2.05 -0.01 0.35 16 22 N -0.66 -7.11 7.63 -109.60 -0.84 -7.94 16 23 C 0.07 0.70 7.27 -2.29 -0.02 0.69 16 24 C -0.15 -1.60 2.37 -154.39 -0.37 -1.97 16 25 C -0.15 -1.62 10.28 -27.02 -0.28 -1.89 16 26 C -0.17 -1.61 9.53 -27.03 -0.26 -1.87 16 27 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 28 H 0.12 3.22 6.22 -52.49 -0.33 2.90 16 29 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 30 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 33 H 0.10 1.83 7.06 -51.93 -0.37 1.46 16 34 H 0.40 4.63 7.69 -40.82 -0.31 4.32 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.56 8.06 -51.93 -0.42 0.14 16 37 H 0.34 2.89 8.92 -39.29 -0.35 2.54 16 38 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.10 1.09 7.43 -51.93 -0.39 0.70 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -30.62 353.13 -10.70 -41.32 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -6.26 Total: 13.10 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -4.35 Total: -22.52 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.47 Total: -38.92 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.62 -10.70 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.530 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds