Wall clock time and date at job start Fri Apr 10 2020 20:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86795 * 120.00340 * 2 1 4 4 H 1.48506 * 109.47361 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47447 * 119.99602 * 3 2 1 7 7 C 1.39949 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99590 * 163.68897 * 7 2 1 9 9 C 1.41393 * 120.00374 * 343.68295 * 7 2 1 10 10 C 1.40736 * 120.24095 * 334.03946 * 9 7 2 11 11 C 1.37593 * 119.74514 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24783 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.50271 * 359.97438 * 12 11 10 14 14 C 1.37641 * 120.24297 * 0.02562 * 13 12 11 15 15 C 1.50708 * 120.12341 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47129 * 264.99985 * 15 14 13 17 17 O 1.21284 * 119.99750 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00167 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00058 * 179.97438 * 18 16 15 20 20 H 1.08994 * 110.34428 * 325.70700 * 19 18 16 21 21 C 1.54562 * 110.37806 * 87.97864 * 19 18 16 22 22 N 1.48619 * 104.64395 * 142.56437 * 21 19 18 23 23 C 1.48730 * 104.35746 * 320.91913 * 22 21 19 24 24 C 1.53629 * 110.38106 * 203.43078 * 19 18 16 25 25 C 1.52301 * 121.44454 * 97.15237 * 24 19 18 26 26 C 1.52276 * 121.47798 * 24.91790 * 24 19 18 27 27 H 0.97000 * 119.99561 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12690 * 0.03638 * 10 9 7 29 29 H 1.08003 * 119.87928 * 180.27220 * 11 10 9 30 30 H 1.08002 * 119.75343 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.87592 * 180.02562 * 13 12 11 32 32 H 1.09004 * 109.46858 * 25.00085 * 15 14 13 33 33 H 1.08994 * 109.46916 * 145.00401 * 15 14 13 34 34 H 0.97003 * 119.99862 * 0.02562 * 18 16 15 35 35 H 1.08997 * 110.40590 * 261.35410 * 21 19 18 36 36 H 1.09005 * 110.40162 * 23.66044 * 21 19 18 37 37 H 1.00898 * 111.00142 * 201.28250 * 22 21 19 38 38 H 1.09003 * 110.44988 * 157.55661 * 23 22 21 39 39 H 1.09004 * 110.44928 * 279.97444 * 23 22 21 40 40 H 1.09003 * 117.51713 * 356.56153 * 25 24 19 41 41 H 1.09002 * 117.51490 * 141.68369 * 25 24 19 42 42 H 1.09008 * 117.51754 * 218.26028 * 26 24 19 43 43 H 1.08999 * 117.52206 * 3.33521 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0553 -1.2307 -0.2633 9 6 1.3437 -2.4120 0.3429 10 6 0.2125 -2.3816 1.1798 11 6 -0.4257 -3.5555 1.5079 12 6 0.0413 -4.7653 1.0170 13 6 1.1538 -4.8071 0.1912 14 6 1.8079 -3.6452 -0.1502 15 6 3.0175 -3.6939 -1.0478 16 6 4.2670 -3.7244 -0.2058 17 8 4.1834 -3.7087 1.0041 18 7 5.4772 -3.7702 -0.7971 19 6 6.6918 -3.7993 0.0214 20 1 6.5531 -3.2079 0.9264 21 6 7.0632 -5.2557 0.3818 22 7 8.5480 -5.2894 0.3271 23 6 8.8931 -4.4421 -0.8455 24 6 7.8913 -3.2743 -0.7822 25 6 8.3595 -1.8303 -0.6589 26 6 7.7067 -2.3203 -1.9546 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1532 -1.4403 1.5628 29 1 -1.2965 -3.5342 2.1464 30 1 -0.4656 -5.6820 1.2800 31 1 1.5086 -5.7549 -0.1858 32 1 2.9746 -4.5899 -1.6670 33 1 3.0316 -2.8110 -1.6867 34 1 5.5440 -3.7832 -1.7648 35 1 6.7144 -5.4997 1.3852 36 1 6.6386 -5.9473 -0.3459 37 1 8.8840 -6.2327 0.2030 38 1 9.9146 -4.0713 -0.7600 39 1 8.7692 -5.0042 -1.7712 40 1 7.7770 -1.1647 -0.0219 41 1 9.4337 -1.6462 -0.6745 42 1 8.3515 -2.4583 -2.8226 43 1 6.6948 -1.9775 -2.1705 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:50 Heat of formation + Delta-G solvation = -8.699833 kcal Electronic energy + Delta-G solvation = -24377.047193 eV Core-core repulsion = 21000.317979 eV Total energy + Delta-G solvation = -3376.729214 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30387 -39.98132 -38.88344 -35.89713 -35.50162 -34.93078 -33.40920 -31.35086 -29.76186 -28.09510 -27.30552 -26.67730 -23.52600 -23.12465 -22.80446 -21.86222 -20.96892 -20.20097 -19.05793 -17.94873 -17.68787 -17.26069 -16.56287 -16.34209 -16.12692 -16.03316 -15.50769 -15.18658 -15.08176 -14.72534 -14.38113 -14.30741 -13.98215 -13.53986 -13.36988 -13.24613 -12.92486 -12.85687 -12.76812 -12.62483 -12.49302 -12.41011 -12.12815 -11.99659 -11.36891 -11.32558 -11.21649 -11.13191 -11.03414 -10.64994 -10.06243 -9.59033 -9.22678 -9.16090 -8.59860 -6.29535 0.99523 1.13298 1.34173 1.44158 1.53143 1.81887 2.18390 2.19752 2.77556 2.86649 3.27505 3.42321 3.69863 3.78790 3.79971 3.98979 4.13293 4.17861 4.39810 4.45237 4.48330 4.61204 4.65180 4.70253 4.73335 4.76151 4.80106 4.84696 4.92149 5.00858 5.05470 5.07514 5.19516 5.23391 5.36485 5.41193 5.54942 5.72319 5.77469 6.03750 6.16534 6.21454 6.36453 6.41954 6.65304 6.74918 6.99096 7.11408 7.43995 8.36564 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.004982 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.577555 B = 5618.385407 C = 7216.413716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.968 3.032 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.482 4.482 8 H 0.070 0.930 9 C 0.096 3.904 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.243 4.243 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.068 4.068 16 C 0.518 3.482 17 O -0.572 6.572 18 N -0.715 5.715 19 C 0.173 3.827 20 H 0.057 0.943 21 C 0.036 3.964 22 N -0.669 5.669 23 C 0.080 3.920 24 C -0.151 4.151 25 C -0.161 4.161 26 C -0.150 4.150 27 H 0.286 0.714 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.352 0.648 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.317 -5.824 -8.104 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.198 1.198 7 C -0.512 4.512 8 H 0.088 0.912 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.262 4.262 13 C -0.109 4.109 14 C -0.190 4.190 15 C -0.108 4.108 16 C 0.306 3.694 17 O -0.450 6.450 18 N -0.369 5.369 19 C 0.067 3.933 20 H 0.075 0.925 21 C -0.095 4.095 22 N -0.300 5.300 23 C -0.049 4.049 24 C -0.152 4.152 25 C -0.199 4.199 26 C -0.187 4.187 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.169 0.831 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.189 -5.181 -6.710 18.274 hybrid contribution -0.560 0.352 -0.541 0.854 sum 15.629 -4.829 -7.251 17.893 Atomic orbital electron populations 1.69875 1.08765 1.30243 1.36325 1.26639 0.95411 1.04075 0.91591 0.85460 0.79032 0.76653 0.79868 1.17570 1.19024 1.19825 1.19573 0.97055 0.91944 1.42649 0.91184 1.17722 0.91339 0.92823 0.88695 1.21302 1.00630 0.96786 1.02645 1.20950 0.99184 0.93420 1.00070 1.20718 1.01635 0.96729 1.07082 1.20735 0.95675 0.96637 0.97873 1.19546 1.00393 0.93455 1.05568 1.20277 0.88987 1.04599 0.96921 1.21187 0.85501 0.74049 0.88629 1.90674 1.87503 1.49911 1.16919 1.45962 1.04241 1.76096 1.10598 1.20896 0.83097 0.95911 0.93404 0.92479 1.23154 0.89499 0.95758 1.01099 1.63631 1.08377 1.16733 1.41232 1.22407 0.98270 0.91892 0.92370 1.21870 0.97083 0.92859 1.03388 1.22969 1.02020 0.94259 1.00614 1.22983 1.02800 1.00634 0.92317 0.90365 0.88608 0.87734 0.86704 0.86528 0.86881 0.88488 0.75001 0.91822 0.92583 0.83118 0.88557 0.91638 0.90572 0.86310 0.85615 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.26 10.97 21.83 0.24 -44.02 16 2 C 0.04 1.93 5.16 85.26 0.44 2.37 16 3 Si 0.97 39.59 29.59 68.60 2.03 41.62 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.48 -26.33 8.14 23.46 0.19 -26.14 16 8 H 0.07 3.72 6.68 -2.91 -0.02 3.70 16 9 C 0.10 5.35 5.56 -21.29 -0.12 5.24 16 10 C -0.19 -10.92 8.68 22.73 0.20 -10.72 16 11 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 12 C -0.24 -11.19 10.05 22.46 0.23 -10.97 16 13 C -0.09 -4.14 9.66 22.22 0.21 -3.92 16 14 C -0.19 -9.10 4.43 -19.40 -0.09 -9.19 16 15 C -0.07 -2.60 5.18 29.10 0.15 -2.45 16 16 C 0.52 19.95 7.46 87.66 0.65 20.60 16 17 O -0.57 -28.22 15.71 -3.04 -0.05 -28.27 16 18 N -0.71 -20.07 4.65 -439.03 -2.04 -22.11 16 19 C 0.17 4.77 3.24 45.73 0.15 4.92 16 20 H 0.06 2.06 7.61 -2.39 -0.02 2.05 16 21 C 0.04 0.88 7.20 86.50 0.62 1.51 16 22 N -0.67 -13.00 7.63 -500.65 -3.82 -16.82 16 23 C 0.08 1.24 7.27 86.28 0.63 1.87 16 24 C -0.15 -3.01 2.37 -52.11 -0.12 -3.14 16 25 C -0.16 -3.14 10.28 30.41 0.31 -2.83 16 26 C -0.15 -2.49 9.53 30.40 0.29 -2.20 16 27 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 28 H 0.10 5.64 6.22 -2.91 -0.02 5.62 16 29 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 30 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.11 3.36 8.05 -2.39 -0.02 3.34 16 33 H 0.10 3.66 7.06 -2.39 -0.02 3.64 16 34 H 0.41 8.73 7.69 -92.71 -0.71 8.02 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 1.26 8.06 -2.38 -0.02 1.24 16 37 H 0.35 5.12 8.92 -89.70 -0.80 4.32 16 38 H 0.10 1.27 8.12 -2.39 -0.02 1.25 16 39 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.09 1.74 7.43 -2.39 -0.02 1.72 16 Total: -1.00 -70.15 353.13 -0.15 -70.30 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.48 Total: 40.04 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 3.97 Total: -40.74 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -5.62 Total: -82.95 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.05 Total: -28.27 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -70.15 -0.15 -70.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.599 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds