Wall clock time and date at job start Fri Apr 10 2020 20:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 119.99905 * 2 1 4 4 H 1.48503 * 109.47287 * 239.99698 * 3 2 1 5 5 H 1.48497 * 109.47371 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47485 * 119.99972 * 3 2 1 7 7 C 1.39947 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99503 * 163.63159 * 7 2 1 9 9 C 1.41396 * 120.00313 * 343.62734 * 7 2 1 10 10 C 1.40733 * 120.24420 * 334.04651 * 9 7 2 11 11 C 1.37593 * 119.74406 * 180.02562 * 10 9 7 12 12 C 1.38650 * 120.24929 * 359.97438 * 11 10 9 13 13 C 1.38608 * 120.50357 * 0.02647 * 12 11 10 14 14 C 1.37641 * 120.24985 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.13208 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.46989 * 265.00352 * 15 14 13 17 17 O 1.21281 * 120.00151 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00142 * 179.97438 * 16 15 14 19 19 C 1.46499 * 120.00418 * 179.97438 * 18 16 15 20 20 H 1.08992 * 110.33807 * 35.82053 * 19 18 16 21 21 C 1.54567 * 110.37865 * 273.54954 * 19 18 16 22 22 N 1.48617 * 104.64141 * 217.43375 * 21 19 18 23 23 C 1.48729 * 104.36104 * 39.08103 * 22 21 19 24 24 C 1.53617 * 110.38399 * 158.21601 * 19 18 16 25 25 C 1.52290 * 121.47925 * 335.07761 * 24 19 18 26 26 C 1.52303 * 121.44471 * 262.84397 * 24 19 18 27 27 H 0.96995 * 119.99565 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.12788 * 0.03422 * 10 9 7 29 29 H 1.08001 * 119.87527 * 180.27457 * 11 10 9 30 30 H 1.08007 * 119.74949 * 180.02562 * 12 11 10 31 31 H 1.08007 * 119.87765 * 179.97438 * 13 12 11 32 32 H 1.08995 * 109.46896 * 25.00138 * 15 14 13 33 33 H 1.08998 * 109.46765 * 145.00090 * 15 14 13 34 34 H 0.97003 * 119.99520 * 0.02562 * 18 16 15 35 35 H 1.08995 * 110.40366 * 336.22004 * 21 19 18 36 36 H 1.08995 * 110.40232 * 98.53405 * 21 19 18 37 37 H 1.00899 * 111.00488 * 158.72091 * 22 21 19 38 38 H 1.09003 * 110.44924 * 79.88861 * 23 22 21 39 39 H 1.08991 * 110.45292 * 202.31424 * 23 22 21 40 40 H 1.08997 * 117.51757 * 356.61850 * 25 24 19 41 41 H 1.09001 * 117.51334 * 141.73816 * 25 24 19 42 42 H 1.08999 * 117.51701 * 218.31986 * 26 24 19 43 43 H 1.09000 * 117.51634 * 3.38908 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0552 -1.2310 -0.2630 9 6 1.3440 -2.4116 0.3462 10 6 0.2136 -2.3800 1.1838 11 6 -0.4243 -3.5536 1.5141 12 6 0.0424 -4.7639 1.0246 13 6 1.1549 -4.8069 0.1989 14 6 1.8088 -3.6455 -0.1446 15 6 3.0184 -3.6955 -1.0421 16 6 4.2677 -3.7242 -0.1999 17 8 4.1842 -3.7054 1.0098 18 7 5.4780 -3.7707 -0.7912 19 6 6.6927 -3.7980 0.0274 20 1 6.5252 -4.3787 0.9344 21 6 7.1347 -2.3602 0.3828 22 7 8.6194 -2.3993 0.3281 23 6 8.9228 -3.2666 -0.8414 24 6 7.8657 -4.3810 -0.7750 25 6 7.6359 -5.3274 -1.9458 26 6 8.2647 -5.8454 -0.6490 27 1 -0.4849 0.8400 -0.0004 28 1 -0.1520 -1.4382 1.5658 29 1 -1.2947 -3.5314 2.1531 30 1 -0.4648 -5.6802 1.2886 31 1 1.5100 -5.7554 -0.1764 32 1 2.9758 -4.5926 -1.6596 33 1 3.0321 -2.8137 -1.6827 34 1 5.5449 -3.7853 -1.7588 35 1 6.7462 -1.6515 -0.3485 36 1 6.7966 -2.0953 1.3845 37 1 9.0011 -1.4740 0.2008 38 1 8.8241 -2.7030 -1.7692 39 1 9.9256 -3.6847 -0.7555 40 1 6.6089 -5.6227 -2.1606 41 1 8.2867 -5.2218 -2.8139 42 1 9.3289 -6.0805 -0.6641 43 1 7.6516 -6.4812 -0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:54 Heat of formation + Delta-G solvation = 11.159272 kcal Electronic energy + Delta-G solvation = -24377.099239 eV Core-core repulsion = 21001.231181 eV Total energy + Delta-G solvation = -3375.868058 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13111 -38.56528 -37.16083 -35.03097 -33.60891 -33.56745 -31.67422 -29.43852 -28.44295 -26.75456 -26.11458 -24.88544 -22.75129 -21.94946 -20.91045 -20.35831 -19.52915 -19.03384 -17.16340 -16.77881 -16.40077 -15.53383 -15.39988 -15.12709 -14.60229 -14.55448 -14.22833 -13.86406 -13.44051 -13.36891 -13.14734 -12.79752 -12.56333 -12.09523 -11.91291 -11.72814 -11.67176 -11.54738 -11.15030 -11.07250 -11.01030 -10.96149 -10.66616 -10.57036 -10.39069 -10.17283 -9.45922 -9.35468 -9.14796 -9.11784 -8.79692 -8.66572 -7.28394 -7.26246 -6.71467 -4.31869 2.81210 2.98106 3.06433 3.09435 3.29529 3.32217 3.35887 3.82030 3.94547 4.16678 4.25634 4.62887 4.68878 4.70560 4.80989 5.20246 5.31319 5.42308 5.44772 5.51996 5.59119 5.71985 5.74080 5.81061 5.93238 5.99738 6.02254 6.07469 6.21446 6.31092 6.42497 6.46490 6.53835 6.82710 6.87880 7.10949 7.12410 7.32369 7.45167 7.66726 7.90798 7.98405 8.10073 8.16026 8.34237 8.67296 8.87914 8.94203 9.04418 10.22860 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.004892 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.106802 B = 5722.170513 C = 7214.582181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.073 0.927 9 C 0.130 3.870 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.070 4.070 16 C 0.515 3.485 17 O -0.517 6.517 18 N -0.739 5.739 19 C 0.180 3.820 20 H 0.096 0.904 21 C 0.026 3.974 22 N -0.663 5.663 23 C 0.073 3.927 24 C -0.144 4.144 25 C -0.165 4.165 26 C -0.154 4.154 27 H 0.280 0.720 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.395 0.605 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.338 0.662 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 -4.760 -5.897 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.183 4.183 15 C -0.110 4.110 16 C 0.302 3.698 17 O -0.390 6.390 18 N -0.394 5.394 19 C 0.074 3.926 20 H 0.114 0.886 21 C -0.104 4.104 22 N -0.291 5.291 23 C -0.056 4.056 24 C -0.145 4.145 25 C -0.203 4.203 26 C -0.191 4.191 27 H 0.091 0.909 28 H 0.134 0.866 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.153 0.847 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.964 -5.057 -4.445 15.503 hybrid contribution 0.147 1.432 -1.248 1.905 sum 14.111 -3.625 -5.693 15.642 Atomic orbital electron populations 1.69813 1.07435 1.29112 1.35754 1.25865 0.94685 1.01047 0.92391 0.86468 0.80252 0.80708 0.79874 1.19205 1.20323 1.18879 1.19418 0.97106 0.90992 1.41098 0.90918 1.17322 0.90754 0.91240 0.87955 1.21288 0.99051 0.96653 1.00836 1.20673 0.98640 0.93477 0.99781 1.20301 1.01577 0.96152 1.07827 1.20293 0.95943 0.95508 0.98211 1.19048 0.99264 0.94042 1.05918 1.20261 0.90587 1.02699 0.97461 1.21283 0.84295 0.74654 0.89523 1.90688 1.86711 1.46928 1.14713 1.46260 1.05267 1.78140 1.09691 1.20880 0.82474 0.95185 0.94036 0.88567 1.23397 0.87562 0.96813 1.02643 1.63692 1.09503 1.16081 1.39852 1.22303 0.97761 0.93180 0.92403 1.21848 0.98037 0.92035 1.02573 1.22892 1.02588 1.02729 0.92075 1.22893 1.01374 0.94749 1.00063 0.90939 0.86568 0.89599 0.89692 0.89820 0.90702 0.88646 0.77064 0.93330 0.89184 0.84660 0.93686 0.90084 0.88154 0.88491 0.88471 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.97 55.55 0.61 -20.00 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.02 8.14 -37.74 -0.31 -12.32 16 8 H 0.07 1.86 6.67 -52.49 -0.35 1.51 16 9 C 0.13 3.48 5.56 -106.82 -0.59 2.89 16 10 C -0.16 -4.29 8.69 -38.88 -0.34 -4.62 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 12 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 13 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.07 -1.37 5.18 -29.04 -0.15 -1.52 16 16 C 0.51 9.91 7.45 -10.99 -0.08 9.83 16 17 O -0.52 -12.33 15.74 5.56 0.09 -12.24 16 18 N -0.74 -10.72 4.69 -52.70 -0.25 -10.97 16 19 C 0.18 2.51 3.22 -66.79 -0.22 2.30 16 20 H 0.10 1.58 7.65 -51.93 -0.40 1.19 16 21 C 0.03 0.37 7.20 -2.05 -0.01 0.35 16 22 N -0.66 -7.60 7.62 -109.75 -0.84 -8.44 16 23 C 0.07 0.71 7.26 -2.42 -0.02 0.70 16 24 C -0.14 -1.53 2.36 -154.52 -0.37 -1.89 16 25 C -0.17 -1.45 9.52 -27.02 -0.26 -1.71 16 26 C -0.15 -1.45 10.27 -27.01 -0.28 -1.72 16 27 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 28 H 0.12 3.22 6.22 -52.48 -0.33 2.89 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.08 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 33 H 0.10 1.83 7.06 -51.93 -0.37 1.47 16 34 H 0.40 4.64 7.62 -40.82 -0.31 4.33 16 35 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.34 3.26 8.92 -39.29 -0.35 2.91 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.71 8.12 -51.93 -0.42 0.28 16 40 H 0.10 0.91 7.40 -51.93 -0.38 0.52 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -30.55 353.06 -10.70 -41.26 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.26 Total: 13.21 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -4.34 Total: -22.04 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.47 Total: -39.40 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.55 -10.70 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.415 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds