Wall clock time and date at job start Fri Apr 10 2020 20:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 119.99905 * 2 1 4 4 H 1.48503 * 109.47287 * 239.99698 * 3 2 1 5 5 H 1.48497 * 109.47371 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47485 * 119.99972 * 3 2 1 7 7 C 1.39947 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99503 * 163.63159 * 7 2 1 9 9 C 1.41396 * 120.00313 * 343.62734 * 7 2 1 10 10 C 1.40733 * 120.24420 * 334.04651 * 9 7 2 11 11 C 1.37593 * 119.74406 * 180.02562 * 10 9 7 12 12 C 1.38650 * 120.24929 * 359.97438 * 11 10 9 13 13 C 1.38608 * 120.50357 * 0.02647 * 12 11 10 14 14 C 1.37641 * 120.24985 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.13208 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.46989 * 265.00352 * 15 14 13 17 17 O 1.21281 * 120.00151 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00142 * 179.97438 * 16 15 14 19 19 C 1.46499 * 120.00418 * 179.97438 * 18 16 15 20 20 H 1.08992 * 110.33807 * 35.82053 * 19 18 16 21 21 C 1.54567 * 110.37865 * 273.54954 * 19 18 16 22 22 N 1.48617 * 104.64141 * 217.43375 * 21 19 18 23 23 C 1.48729 * 104.36104 * 39.08103 * 22 21 19 24 24 C 1.53617 * 110.38399 * 158.21601 * 19 18 16 25 25 C 1.52290 * 121.47925 * 335.07761 * 24 19 18 26 26 C 1.52303 * 121.44471 * 262.84397 * 24 19 18 27 27 H 0.96995 * 119.99565 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.12788 * 0.03422 * 10 9 7 29 29 H 1.08001 * 119.87527 * 180.27457 * 11 10 9 30 30 H 1.08007 * 119.74949 * 180.02562 * 12 11 10 31 31 H 1.08007 * 119.87765 * 179.97438 * 13 12 11 32 32 H 1.08995 * 109.46896 * 25.00138 * 15 14 13 33 33 H 1.08998 * 109.46765 * 145.00090 * 15 14 13 34 34 H 0.97003 * 119.99520 * 0.02562 * 18 16 15 35 35 H 1.08995 * 110.40366 * 336.22004 * 21 19 18 36 36 H 1.08995 * 110.40232 * 98.53405 * 21 19 18 37 37 H 1.00899 * 111.00488 * 158.72091 * 22 21 19 38 38 H 1.09003 * 110.44924 * 79.88861 * 23 22 21 39 39 H 1.08991 * 110.45292 * 202.31424 * 23 22 21 40 40 H 1.08997 * 117.51757 * 356.61850 * 25 24 19 41 41 H 1.09001 * 117.51334 * 141.73816 * 25 24 19 42 42 H 1.08999 * 117.51701 * 218.31986 * 26 24 19 43 43 H 1.09000 * 117.51634 * 3.38908 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0552 -1.2310 -0.2630 9 6 1.3440 -2.4116 0.3462 10 6 0.2136 -2.3800 1.1838 11 6 -0.4243 -3.5536 1.5141 12 6 0.0424 -4.7639 1.0246 13 6 1.1549 -4.8069 0.1989 14 6 1.8088 -3.6455 -0.1446 15 6 3.0184 -3.6955 -1.0421 16 6 4.2677 -3.7242 -0.1999 17 8 4.1842 -3.7054 1.0098 18 7 5.4780 -3.7707 -0.7912 19 6 6.6927 -3.7980 0.0274 20 1 6.5252 -4.3787 0.9344 21 6 7.1347 -2.3602 0.3828 22 7 8.6194 -2.3993 0.3281 23 6 8.9228 -3.2666 -0.8414 24 6 7.8657 -4.3810 -0.7750 25 6 7.6359 -5.3274 -1.9458 26 6 8.2647 -5.8454 -0.6490 27 1 -0.4849 0.8400 -0.0004 28 1 -0.1520 -1.4382 1.5658 29 1 -1.2947 -3.5314 2.1531 30 1 -0.4648 -5.6802 1.2886 31 1 1.5100 -5.7554 -0.1764 32 1 2.9758 -4.5926 -1.6596 33 1 3.0321 -2.8137 -1.6827 34 1 5.5449 -3.7853 -1.7588 35 1 6.7462 -1.6515 -0.3485 36 1 6.7966 -2.0953 1.3845 37 1 9.0011 -1.4740 0.2008 38 1 8.8241 -2.7030 -1.7692 39 1 9.9256 -3.6847 -0.7555 40 1 6.6089 -5.6227 -2.1606 41 1 8.2867 -5.2218 -2.8139 42 1 9.3289 -6.0805 -0.6641 43 1 7.6516 -6.4812 -0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:53 Heat of formation + Delta-G solvation = -8.665973 kcal Electronic energy + Delta-G solvation = -24377.958926 eV Core-core repulsion = 21001.231181 eV Total energy + Delta-G solvation = -3376.727745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30958 -39.98510 -38.88392 -35.89010 -35.50032 -34.93330 -33.40947 -31.35046 -29.76590 -28.09432 -27.30600 -26.67835 -23.49936 -23.13073 -22.81813 -21.86114 -20.95912 -20.19397 -19.05652 -17.94753 -17.68153 -17.25382 -16.66067 -16.26666 -16.11674 -16.02143 -15.50477 -15.18452 -15.10418 -14.76710 -14.37523 -14.28309 -13.96031 -13.53234 -13.37104 -13.27162 -12.92340 -12.87225 -12.76530 -12.63452 -12.48628 -12.37471 -12.13092 -11.99460 -11.35090 -11.32361 -11.21620 -11.11827 -11.03226 -10.64517 -10.06811 -9.61876 -9.22655 -9.16025 -8.59823 -6.29315 0.99528 1.13332 1.33909 1.43938 1.53064 1.81714 2.18316 2.20521 2.77796 2.88095 3.27573 3.42418 3.68574 3.78990 3.80372 4.00792 4.12763 4.17109 4.40240 4.44956 4.49370 4.61064 4.64725 4.70610 4.74587 4.78641 4.80343 4.85200 4.90901 5.03542 5.04335 5.07805 5.19632 5.26143 5.36571 5.40503 5.55046 5.71245 5.77569 6.03874 6.16608 6.21566 6.31407 6.42024 6.65335 6.74976 6.99196 7.11537 7.43954 8.36652 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.004892 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.106802 B = 5722.170513 C = 7214.582181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.969 3.031 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.482 4.482 8 H 0.071 0.929 9 C 0.097 3.903 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.243 4.243 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.068 4.068 16 C 0.518 3.482 17 O -0.572 6.572 18 N -0.715 5.715 19 C 0.177 3.823 20 H 0.064 0.936 21 C 0.030 3.970 22 N -0.667 5.667 23 C 0.077 3.923 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.154 4.154 27 H 0.286 0.714 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.349 0.651 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.294 -5.620 -8.065 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.512 4.512 8 H 0.089 0.911 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.262 4.262 13 C -0.109 4.109 14 C -0.190 4.190 15 C -0.108 4.108 16 C 0.306 3.694 17 O -0.450 6.450 18 N -0.369 5.369 19 C 0.072 3.928 20 H 0.082 0.918 21 C -0.101 4.101 22 N -0.298 5.298 23 C -0.052 4.052 24 C -0.156 4.156 25 C -0.185 4.185 26 C -0.191 4.191 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.250 0.750 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.142 -5.929 -6.670 18.445 hybrid contribution -0.520 1.572 -0.554 1.746 sum 15.622 -4.357 -7.224 17.755 Atomic orbital electron populations 1.69877 1.08777 1.30241 1.36325 1.26645 0.95409 1.04087 0.91602 0.85453 0.79028 0.76641 0.79840 1.17680 1.19078 1.19711 1.19572 0.97086 0.91932 1.42563 0.91133 1.17723 0.91323 0.92818 0.88686 1.21300 1.00646 0.96776 1.02634 1.20947 0.99187 0.93423 1.00067 1.20713 1.01642 0.96727 1.07107 1.20737 0.95683 0.96652 0.97875 1.19547 1.00396 0.93444 1.05584 1.20273 0.88987 1.04602 0.96923 1.21187 0.85480 0.74068 0.88631 1.90674 1.87538 1.49837 1.16911 1.45982 1.04249 1.76104 1.10611 1.20848 0.83211 0.95173 0.93595 0.91751 1.23186 0.89518 0.96622 1.00761 1.63644 1.07424 1.17247 1.41434 1.22390 0.98193 0.92500 0.92135 1.21792 0.96810 0.93025 1.03992 1.23007 1.03000 1.00289 0.92214 1.22981 1.02457 0.93286 1.00378 0.90376 0.88604 0.87744 0.86727 0.86555 0.86875 0.88491 0.75011 0.93633 0.92240 0.83419 0.92203 0.88304 0.88360 0.85960 0.86510 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.16 10.97 21.83 0.24 -43.93 16 2 C 0.04 1.91 5.16 85.26 0.44 2.35 16 3 Si 0.97 39.39 29.59 68.60 2.03 41.42 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.48 -26.18 8.14 23.46 0.19 -25.99 16 8 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 9 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 10 C -0.19 -10.90 8.69 22.73 0.20 -10.70 16 11 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 12 C -0.24 -11.21 10.05 22.46 0.23 -10.99 16 13 C -0.09 -4.15 9.66 22.22 0.21 -3.94 16 14 C -0.19 -9.10 4.43 -19.40 -0.09 -9.19 16 15 C -0.07 -2.59 5.18 29.10 0.15 -2.44 16 16 C 0.52 19.91 7.45 87.65 0.65 20.56 16 17 O -0.57 -28.13 15.74 -3.03 -0.05 -28.18 16 18 N -0.72 -20.04 4.69 -439.04 -2.06 -22.10 16 19 C 0.18 4.89 3.22 45.73 0.15 5.04 16 20 H 0.06 2.20 7.65 -2.39 -0.02 2.19 16 21 C 0.03 0.84 7.20 86.50 0.62 1.47 16 22 N -0.67 -14.44 7.62 -501.13 -3.82 -18.26 16 23 C 0.08 1.27 7.26 86.20 0.63 1.90 16 24 C -0.16 -2.94 2.36 -52.19 -0.12 -3.06 16 25 C -0.15 -2.06 9.52 30.41 0.29 -1.77 16 26 C -0.15 -2.50 10.27 30.41 0.31 -2.18 16 27 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 28 H 0.10 5.63 6.22 -2.91 -0.02 5.61 16 29 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.11 3.36 8.05 -2.39 -0.02 3.34 16 33 H 0.10 3.66 7.06 -2.39 -0.02 3.64 16 34 H 0.41 8.70 7.62 -92.71 -0.71 8.00 16 35 H 0.05 1.28 8.06 -2.39 -0.02 1.26 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.35 6.18 8.92 -89.69 -0.80 5.38 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.10 1.34 8.12 -2.39 -0.02 1.32 16 40 H 0.10 1.43 7.40 -2.39 -0.02 1.42 16 41 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -69.79 353.06 -0.16 -69.96 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -0.47 Total: 40.48 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 3.96 Total: -39.39 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -5.64 Total: -84.28 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.05 Total: -28.18 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -69.79 -0.16 -69.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.291 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds