Wall clock time and date at job start Fri Apr 10 2020 20:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99736 * 2 1 4 4 N 1.46895 * 109.46958 * 124.16594 * 3 2 1 5 5 C 1.46901 * 111.00272 * 301.51762 * 4 3 2 6 6 C 1.50700 * 109.47345 * 288.66463 * 5 4 3 7 7 H 1.07997 * 119.99964 * 354.83033 * 6 5 4 8 8 C 1.37881 * 119.99895 * 174.82731 * 6 5 4 9 9 N 1.31515 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46987 * 60.00265 * 10 8 6 12 12 H 1.48492 * 109.46895 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47079 * 300.00476 * 10 8 6 14 14 C 1.46903 * 111.00202 * 65.47452 * 4 3 2 15 15 C 1.50703 * 109.46685 * 66.04609 * 14 4 3 16 16 C 1.38474 * 120.83621 * 259.99914 * 15 14 4 17 17 C 1.38268 * 119.27718 * 179.97438 * 16 15 14 18 18 N 1.31913 * 121.01863 * 0.02562 * 17 16 15 19 19 C 1.31719 * 121.85127 * 359.97438 * 18 17 16 20 20 C 1.39302 * 120.60390 * 359.74099 * 19 18 17 21 21 C 1.48463 * 120.53707 * 180.25856 * 20 19 18 22 22 N 1.34041 * 126.67275 * 179.97438 * 21 20 19 23 23 N 1.28988 * 107.26985 * 179.87913 * 22 21 20 24 24 N 1.28735 * 108.94218 * 0.39871 * 23 22 21 25 25 H 0.96997 * 125.34288 * 179.77051 * 24 23 22 26 26 N 1.28876 * 109.31557 * 359.74884 * 24 23 22 27 27 H 1.08010 * 119.99263 * 179.97438 * 1 2 3 28 28 H 1.07992 * 120.00242 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00566 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46757 * 4.16964 * 3 2 1 31 31 H 1.08998 * 109.47109 * 244.17166 * 3 2 1 32 32 H 1.08999 * 109.46879 * 48.66318 * 5 4 3 33 33 H 1.09001 * 109.47260 * 168.66625 * 5 4 3 34 34 H 0.96997 * 119.99831 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.46962 * 186.04002 * 14 4 3 36 36 H 1.08991 * 109.46595 * 306.04619 * 14 4 3 37 37 H 1.07993 * 120.36353 * 359.95872 * 16 15 14 38 38 H 1.07995 * 119.48442 * 180.02562 * 17 16 15 39 39 H 1.08007 * 119.70176 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9819 1.3404 1.1459 5 6 2.2516 1.1841 2.4109 6 6 1.4612 2.4359 2.6926 7 1 1.5621 3.2952 2.0463 8 6 0.6091 2.4841 3.7756 9 7 0.4865 1.4379 4.5630 10 14 -0.3712 4.0356 4.1244 11 1 -1.2477 4.3385 2.9645 12 1 -1.2053 3.8321 5.3359 13 1 0.5606 5.1696 4.3501 14 6 4.0290 0.3187 1.0130 15 6 4.9102 0.6528 -0.1631 16 6 4.7397 0.0165 -1.3811 17 6 5.5660 0.3484 -2.4389 18 7 6.5109 1.2589 -2.3036 19 6 6.7102 1.8900 -1.1648 20 6 5.9156 1.6163 -0.0538 21 6 6.1378 2.3326 1.2275 22 7 5.4504 2.1679 2.3663 23 7 5.9560 2.9726 3.2385 24 7 6.9166 3.6322 2.6912 25 1 7.4584 4.3046 3.1328 26 7 7.0456 3.2584 1.4646 27 1 -0.5399 -0.9355 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3574 2.1323 0.0747 31 1 2.6329 1.3960 -0.9250 32 1 1.5725 0.3348 2.3359 33 1 2.9604 1.0121 3.2209 34 1 -0.1126 1.4720 5.3250 35 1 4.6301 0.2942 1.9218 36 1 3.5676 -0.6561 0.8559 37 1 3.9699 -0.7309 -1.5035 38 1 5.4358 -0.1454 -3.3904 39 1 7.4944 2.6292 -1.0926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588631901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:56 Heat of formation + Delta-G solvation = 200.163216 kcal Electronic energy + Delta-G solvation = -24509.171334 eV Core-core repulsion = 21070.251510 eV Total energy + Delta-G solvation = -3438.919824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.07950 -40.21129 -37.32746 -34.42216 -33.49800 -32.90515 -32.70741 -31.39394 -30.56994 -27.45615 -26.43861 -24.94286 -24.34354 -23.62566 -22.16974 -21.47188 -20.76000 -18.98766 -18.71801 -16.78333 -16.58047 -16.33588 -16.04605 -15.76798 -15.10195 -14.61719 -14.27322 -14.03809 -13.84821 -13.55357 -13.44242 -13.08713 -12.27233 -12.07630 -11.95715 -11.77777 -11.38556 -11.17701 -11.02417 -10.90369 -10.83560 -10.69291 -10.57392 -10.39691 -10.35079 -9.87961 -9.52936 -9.38813 -9.12858 -8.74754 -8.64894 -8.29454 -7.13222 -5.90520 -3.89318 0.71860 1.29063 1.55474 2.51742 2.67340 2.93649 3.37601 3.41778 3.44670 3.87836 3.92646 4.44576 4.51093 4.51834 4.82952 4.84278 5.26345 5.30158 5.38047 5.45318 5.56487 5.66318 5.66794 5.78290 5.84710 5.93264 6.07698 6.11776 6.36680 6.45683 6.51174 6.66542 6.68551 6.73772 7.20170 7.38559 7.44107 7.53972 7.91541 7.93828 8.24669 8.31053 8.55697 8.66730 9.16624 9.72703 11.20136 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.006062 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.472380 B = 4617.957833 C = 6207.187226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.085 3.915 4 N -0.508 5.508 5 C 0.199 3.801 6 C -0.492 4.492 7 H 0.056 0.944 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.890 3.110 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.279 1.279 14 C 0.079 3.921 15 C 0.019 3.981 16 C -0.171 4.171 17 C 0.108 3.892 18 N -0.491 5.491 19 C 0.134 3.866 20 C -0.050 4.050 21 C 0.220 3.780 22 N -0.214 5.214 23 N -0.046 5.046 24 N -0.238 5.238 25 H 0.470 0.530 26 N -0.307 5.307 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.002 0.998 33 H 0.033 0.967 34 H 0.259 0.741 35 H 0.101 0.899 36 H 0.038 0.962 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.859 -1.309 -9.677 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.199 4.199 3 C -0.043 4.043 4 N -0.231 5.231 5 C 0.075 3.925 6 C -0.531 4.531 7 H 0.074 0.926 8 C -0.143 4.143 9 N -0.538 5.538 10 Si 0.719 3.281 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.205 1.205 14 C -0.049 4.049 15 C 0.008 3.992 16 C -0.191 4.191 17 C -0.048 4.048 18 N -0.200 5.200 19 C -0.026 4.026 20 C -0.056 4.056 21 C -0.061 4.061 22 N -0.086 5.086 23 N -0.041 5.041 24 N -0.082 5.082 25 H 0.323 0.677 26 N -0.159 5.159 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.399 -0.550 -9.540 15.654 hybrid contribution -1.266 0.207 0.908 1.571 sum 11.133 -0.343 -8.632 14.092 Atomic orbital electron populations 1.23676 0.96068 1.01046 1.00708 1.23500 0.96670 0.99644 1.00105 1.21319 0.94780 0.94419 0.93761 1.62401 1.12240 1.44363 1.04094 1.19714 0.92094 0.96522 0.84220 1.21014 1.22554 0.99066 1.10491 0.92612 1.24894 0.97107 0.95998 0.96332 1.69941 1.38339 1.29100 1.16463 0.86694 0.80021 0.83963 0.77446 1.20528 1.21478 1.20496 1.21269 0.94095 0.94257 0.95295 1.20561 0.92047 0.90739 0.95821 1.22069 1.01615 1.02446 0.93012 1.22822 0.90251 0.93116 0.98654 1.67723 1.19438 1.08070 1.24766 1.22792 0.96694 0.96435 0.86702 1.18137 0.99415 0.98180 0.89852 1.23294 0.91608 0.95573 0.95582 1.76514 1.18818 1.15495 0.97805 1.79138 0.99349 1.03214 1.22437 1.47728 1.24492 1.29933 1.06047 0.67670 1.74754 1.24887 1.16215 1.00036 0.89770 0.88579 0.88725 0.89985 0.92458 0.98025 0.94939 0.93152 0.88087 0.94450 0.84350 0.82584 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 14.32 29.01 0.42 -2.69 16 2 C -0.18 -3.16 7.39 -36.02 -0.27 -3.43 16 3 C 0.09 1.62 5.45 -4.97 -0.03 1.59 16 4 N -0.51 -10.56 4.10 -238.96 -0.98 -11.54 16 5 C 0.20 5.06 4.57 -4.98 -0.02 5.03 16 6 C -0.49 -13.75 8.53 -34.44 -0.29 -14.05 16 7 H 0.06 1.58 7.63 -52.49 -0.40 1.18 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.08 1.39 4.02 -4.97 -0.02 1.37 16 15 C 0.02 0.29 4.63 -103.99 -0.48 -0.20 16 16 C -0.17 -2.12 8.73 -39.48 -0.34 -2.46 16 17 C 0.11 1.24 11.17 -17.51 -0.20 1.05 16 18 N -0.49 -6.50 10.35 -12.98 -0.13 -6.63 16 19 C 0.13 1.80 10.87 -17.20 -0.19 1.61 16 20 C -0.05 -0.76 5.89 -104.75 -0.62 -1.38 16 21 C 0.22 3.60 7.82 -156.31 -1.22 2.38 16 22 N -0.21 -4.01 9.00 32.15 0.29 -3.72 16 23 N -0.05 -0.78 13.47 60.35 0.81 0.04 16 24 N -0.24 -2.97 7.90 60.35 0.48 -2.49 16 25 H 0.47 3.39 8.96 -340.36 -3.05 0.34 16 26 N -0.31 -4.29 12.11 32.17 0.39 -3.90 16 27 H 0.08 1.32 8.06 -52.48 -0.42 0.90 16 28 H 0.10 1.75 7.84 -52.49 -0.41 1.34 16 29 H 0.09 1.53 6.84 -52.49 -0.36 1.17 16 30 H 0.08 1.73 7.03 -51.93 -0.37 1.36 16 31 H 0.06 0.98 6.36 -51.93 -0.33 0.65 16 32 H 0.00 0.05 6.67 -51.93 -0.35 -0.29 16 33 H 0.03 0.90 7.82 -51.93 -0.41 0.50 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 36 H 0.04 0.63 6.31 -51.93 -0.33 0.30 16 37 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.16 1.88 7.90 -52.48 -0.41 1.46 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -33.07 331.58 -8.91 -41.99 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.12 Total: -0.10 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.36 Total: -9.63 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 1.59 Total: -54.26 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.07 -8.91 -41.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588631901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.149 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds