Wall clock time and date at job start Fri Apr 10 2020 20:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99736 * 2 1 4 4 N 1.46895 * 109.46958 * 124.16594 * 3 2 1 5 5 C 1.46901 * 111.00272 * 301.51762 * 4 3 2 6 6 C 1.50700 * 109.47345 * 288.66463 * 5 4 3 7 7 H 1.07997 * 119.99964 * 354.83033 * 6 5 4 8 8 C 1.37881 * 119.99895 * 174.82731 * 6 5 4 9 9 N 1.31515 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46987 * 60.00265 * 10 8 6 12 12 H 1.48492 * 109.46895 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47079 * 300.00476 * 10 8 6 14 14 C 1.46903 * 111.00202 * 65.47452 * 4 3 2 15 15 C 1.50703 * 109.46685 * 66.04609 * 14 4 3 16 16 C 1.38474 * 120.83621 * 259.99914 * 15 14 4 17 17 C 1.38268 * 119.27718 * 179.97438 * 16 15 14 18 18 N 1.31913 * 121.01863 * 0.02562 * 17 16 15 19 19 C 1.31719 * 121.85127 * 359.97438 * 18 17 16 20 20 C 1.39302 * 120.60390 * 359.74099 * 19 18 17 21 21 C 1.48463 * 120.53707 * 180.25856 * 20 19 18 22 22 N 1.34041 * 126.67275 * 179.97438 * 21 20 19 23 23 N 1.28988 * 107.26985 * 179.87913 * 22 21 20 24 24 N 1.28735 * 108.94218 * 0.39871 * 23 22 21 25 25 H 0.96997 * 125.34288 * 179.77051 * 24 23 22 26 26 N 1.28876 * 109.31557 * 359.74884 * 24 23 22 27 27 H 1.08010 * 119.99263 * 179.97438 * 1 2 3 28 28 H 1.07992 * 120.00242 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00566 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46757 * 4.16964 * 3 2 1 31 31 H 1.08998 * 109.47109 * 244.17166 * 3 2 1 32 32 H 1.08999 * 109.46879 * 48.66318 * 5 4 3 33 33 H 1.09001 * 109.47260 * 168.66625 * 5 4 3 34 34 H 0.96997 * 119.99831 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.46962 * 186.04002 * 14 4 3 36 36 H 1.08991 * 109.46595 * 306.04619 * 14 4 3 37 37 H 1.07993 * 120.36353 * 359.95872 * 16 15 14 38 38 H 1.07995 * 119.48442 * 180.02562 * 17 16 15 39 39 H 1.08007 * 119.70176 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9819 1.3404 1.1459 5 6 2.2516 1.1841 2.4109 6 6 1.4612 2.4359 2.6926 7 1 1.5621 3.2952 2.0463 8 6 0.6091 2.4841 3.7756 9 7 0.4865 1.4379 4.5630 10 14 -0.3712 4.0356 4.1244 11 1 -1.2477 4.3385 2.9645 12 1 -1.2053 3.8321 5.3359 13 1 0.5606 5.1696 4.3501 14 6 4.0290 0.3187 1.0130 15 6 4.9102 0.6528 -0.1631 16 6 4.7397 0.0165 -1.3811 17 6 5.5660 0.3484 -2.4389 18 7 6.5109 1.2589 -2.3036 19 6 6.7102 1.8900 -1.1648 20 6 5.9156 1.6163 -0.0538 21 6 6.1378 2.3326 1.2275 22 7 5.4504 2.1679 2.3663 23 7 5.9560 2.9726 3.2385 24 7 6.9166 3.6322 2.6912 25 1 7.4584 4.3046 3.1328 26 7 7.0456 3.2584 1.4646 27 1 -0.5399 -0.9355 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9352 0.0004 30 1 1.3574 2.1323 0.0747 31 1 2.6329 1.3960 -0.9250 32 1 1.5725 0.3348 2.3359 33 1 2.9604 1.0121 3.2209 34 1 -0.1126 1.4720 5.3250 35 1 4.6301 0.2942 1.9218 36 1 3.5676 -0.6561 0.8559 37 1 3.9699 -0.7309 -1.5035 38 1 5.4358 -0.1454 -3.3904 39 1 7.4944 2.6292 -1.0926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588631901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:56 Heat of formation + Delta-G solvation = 176.884134 kcal Electronic energy + Delta-G solvation = -24510.180791 eV Core-core repulsion = 21070.251510 eV Total energy + Delta-G solvation = -3439.929281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.27630 -41.28023 -38.85851 -35.62544 -34.82024 -34.66382 -34.10520 -32.89714 -31.64362 -29.28540 -27.91718 -26.13289 -25.84220 -25.04861 -23.36353 -22.89656 -22.22094 -20.36102 -19.96187 -18.30576 -17.97585 -17.57504 -17.40305 -16.89892 -16.78305 -16.12224 -16.00328 -15.41847 -15.01742 -14.77562 -14.69389 -14.55789 -13.99318 -13.50446 -13.44140 -13.05664 -12.89477 -12.76871 -12.62046 -12.49584 -12.30558 -12.14208 -12.10175 -12.03228 -11.96055 -11.58134 -11.26928 -10.57032 -10.51506 -10.44060 -10.08025 -9.80375 -8.80264 -8.09216 -6.15589 -0.33809 0.23166 0.35437 1.38860 1.40897 1.46956 1.48415 1.52386 1.57467 2.43727 2.77571 2.85476 3.23224 3.30522 3.53425 3.59451 3.71355 3.93671 4.13502 4.25129 4.27982 4.34776 4.53001 4.58251 4.61141 4.65904 4.82552 4.98189 5.01517 5.05255 5.15706 5.35884 5.41501 5.52924 5.68885 5.72851 5.75487 5.78838 5.98985 6.22767 6.52736 6.75887 6.95076 6.99271 7.33926 7.51301 9.00438 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.006062 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.472380 B = 4617.957833 C = 6207.187226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.183 4.183 3 C 0.090 3.910 4 N -0.515 5.515 5 C 0.224 3.776 6 C -0.501 4.501 7 H 0.046 0.954 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.952 3.048 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.277 1.277 14 C 0.086 3.914 15 C 0.003 3.997 16 C -0.164 4.164 17 C 0.119 3.881 18 N -0.499 5.499 19 C 0.138 3.862 20 C -0.067 4.067 21 C 0.209 3.791 22 N -0.256 5.256 23 N -0.074 5.074 24 N -0.206 5.206 25 H 0.490 0.510 26 N -0.293 5.293 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.054 0.946 31 H 0.081 0.919 32 H -0.021 1.021 33 H 0.000 1.000 34 H 0.260 0.740 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.161 0.839 38 H 0.196 0.804 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 -1.185 -11.769 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.202 4.202 3 C -0.037 4.037 4 N -0.237 5.237 5 C 0.098 3.902 6 C -0.540 4.540 7 H 0.064 0.936 8 C -0.189 4.189 9 N -0.572 5.572 10 Si 0.778 3.222 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.202 1.202 14 C -0.042 4.042 15 C -0.007 4.007 16 C -0.184 4.184 17 C -0.037 4.037 18 N -0.208 5.208 19 C -0.022 4.022 20 C -0.073 4.073 21 C -0.072 4.072 22 N -0.127 5.127 23 N -0.069 5.069 24 N -0.055 5.055 25 H 0.349 0.651 26 N -0.147 5.147 27 H 0.123 0.877 28 H 0.101 0.899 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.099 0.901 32 H -0.003 1.003 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.178 0.822 38 H 0.213 0.787 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 12.971 -0.411 -11.636 17.430 hybrid contribution -1.321 0.181 1.490 2.000 sum 11.650 -0.230 -10.146 15.450 Atomic orbital electron populations 1.23811 0.96270 1.01481 1.00440 1.23533 0.96764 0.99648 1.00267 1.21235 0.94384 0.94297 0.93826 1.62188 1.12530 1.46228 1.02728 1.19200 0.90721 0.94572 0.85705 1.21257 1.22812 0.99596 1.10328 0.93569 1.25659 0.98180 0.98939 0.96153 1.70061 1.39139 1.31014 1.16956 0.85712 0.78673 0.80230 0.77595 1.19569 1.20854 1.20232 1.21119 0.93238 0.93727 0.96078 1.20388 0.92292 0.92147 0.95922 1.22293 1.02057 1.02171 0.91878 1.23437 0.88651 0.91901 0.99735 1.67823 1.20049 1.08532 1.24379 1.22956 0.96506 0.96515 0.86186 1.18283 1.00343 0.98746 0.89961 1.23617 0.91727 0.96116 0.95716 1.76495 1.20429 1.16836 0.98977 1.79056 1.00759 1.04207 1.22890 1.47774 1.23206 1.29019 1.05546 0.65137 1.74725 1.24125 1.15558 1.00253 0.87679 0.89907 0.86770 0.92761 0.90092 1.00297 0.98223 0.93102 0.90075 0.93536 0.82175 0.78689 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 14.32 67.78 0.97 -5.29 16 2 C -0.18 -6.26 7.39 25.65 0.19 -6.07 16 3 C 0.09 3.40 5.45 85.56 0.47 3.86 16 4 N -0.51 -21.75 4.10 -909.94 -3.73 -25.48 16 5 C 0.22 11.81 4.57 85.56 0.39 12.20 16 6 C -0.50 -28.76 8.53 25.60 0.22 -28.54 16 7 H 0.05 2.68 7.63 -2.91 -0.02 2.66 16 8 C 0.01 0.48 5.46 84.66 0.46 0.94 16 9 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 10 Si 0.95 45.66 29.54 68.60 2.03 47.69 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 C 0.09 3.06 4.02 85.56 0.34 3.41 16 15 C 0.00 0.08 4.63 -19.46 -0.09 -0.01 16 16 C -0.16 -3.57 8.73 22.33 0.19 -3.37 16 17 C 0.12 2.29 11.17 84.69 0.95 3.23 16 18 N -0.50 -11.69 10.35 -194.99 -2.02 -13.71 16 19 C 0.14 3.44 10.87 84.97 0.92 4.36 16 20 C -0.07 -1.99 5.89 -19.95 -0.12 -2.11 16 21 C 0.21 6.84 7.82 137.38 1.07 7.91 16 22 N -0.26 -9.91 9.00 -52.18 -0.47 -10.38 16 23 N -0.07 -2.56 13.47 37.02 0.50 -2.06 16 24 N -0.21 -5.05 7.90 37.02 0.29 -4.75 16 25 H 0.49 6.58 8.96 -347.54 -3.12 3.46 16 26 N -0.29 -8.01 12.11 -52.13 -0.63 -8.64 16 27 H 0.10 3.14 8.06 -2.91 -0.02 3.11 16 28 H 0.08 3.04 7.84 -2.91 -0.02 3.02 16 29 H 0.11 3.46 6.84 -2.91 -0.02 3.44 16 30 H 0.05 2.32 7.03 -2.39 -0.02 2.31 16 31 H 0.08 2.63 6.36 -2.39 -0.02 2.62 16 32 H -0.02 -1.17 6.67 -2.39 -0.02 -1.18 16 33 H 0.00 -0.02 7.82 -2.39 -0.02 -0.04 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.08 3.23 5.82 -2.39 -0.01 3.21 16 36 H 0.05 1.53 6.31 -2.39 -0.02 1.52 16 37 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.17 3.72 7.90 -2.91 -0.02 3.70 16 Total: -1.00 -73.03 331.58 0.21 -72.82 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.02 Total: 10.31 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 5.97 Total: -9.47 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -5.77 Total: -121.35 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -73.03 0.21 -72.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588631901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.703 kcal (2) G-P(sol) polarization free energy of solvation -73.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds