Wall clock time and date at job start Fri Apr 10 2020 20:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00116 * 2 1 4 4 N 1.46895 * 109.47138 * 123.08903 * 3 2 1 5 5 C 1.46904 * 111.00067 * 64.02103 * 4 3 2 6 6 C 1.50705 * 109.46915 * 66.03959 * 5 4 3 7 7 H 1.07995 * 120.00257 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99789 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99937 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99623 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47040 * 90.00583 * 10 8 6 12 12 H 1.48501 * 109.46856 * 210.00124 * 10 8 6 13 13 H 1.48496 * 109.47486 * 329.99875 * 10 8 6 14 14 C 1.46893 * 111.00472 * 300.06871 * 4 3 2 15 15 C 1.50700 * 109.46767 * 288.05627 * 14 4 3 16 16 C 1.38313 * 119.49459 * 93.98218 * 15 14 4 17 17 C 1.38417 * 119.28041 * 180.02562 * 16 15 14 18 18 C 1.39730 * 118.31789 * 359.97438 * 17 16 15 19 19 C 1.48464 * 120.53271 * 180.02562 * 18 17 16 20 20 N 1.34048 * 126.67236 * 359.66834 * 19 18 17 21 21 N 1.28993 * 107.26690 * 179.83407 * 20 19 18 22 22 N 1.28727 * 108.94057 * 0.43464 * 21 20 19 23 23 H 0.97004 * 125.34341 * 179.70596 * 22 21 20 24 24 N 1.28877 * 109.32066 * 359.72189 * 22 21 20 25 25 C 1.39259 * 118.93440 * 0.02562 * 18 17 16 26 26 N 1.31756 * 120.60237 * 359.97438 * 25 18 17 27 27 H 1.08007 * 120.00035 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00310 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00164 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46846 * 3.08923 * 3 2 1 31 31 H 1.09003 * 109.47284 * 243.09272 * 3 2 1 32 32 H 1.08991 * 109.47558 * 186.04473 * 5 4 3 33 33 H 1.09007 * 109.46941 * 306.04949 * 5 4 3 34 34 H 0.96999 * 120.00070 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47344 * 168.05603 * 14 4 3 36 36 H 1.09000 * 109.47246 * 48.05139 * 14 4 3 37 37 H 1.08007 * 120.35562 * 0.03910 * 16 15 14 38 38 H 1.08004 * 120.83907 * 179.97438 * 17 16 15 39 39 H 1.07989 * 119.69738 * 179.71833 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9632 1.3511 1.1603 5 6 3.9916 0.3059 1.0709 6 6 4.8988 0.5925 -0.0979 7 1 4.7286 1.4641 -0.7125 8 6 5.9466 -0.2575 -0.3819 9 7 6.1541 -1.3186 0.3668 10 14 7.0714 0.0983 -1.8302 11 1 8.2057 0.9444 -1.3799 12 1 7.5939 -1.1799 -2.3767 13 1 6.3091 0.8128 -2.8853 14 6 2.2089 1.2412 2.4160 15 6 1.4511 2.5207 2.6603 16 6 0.1380 2.6256 2.2385 17 6 -0.5537 3.8030 2.4647 18 6 0.1090 4.8464 3.1163 19 6 -0.5861 6.1305 3.3845 20 7 -1.8480 6.4415 3.0562 21 7 -2.0653 7.6446 3.4677 22 7 -0.9962 8.0947 4.0259 23 1 -0.8953 8.9777 4.4148 24 7 -0.0808 7.1884 3.9868 25 6 1.4321 4.6624 3.5100 26 7 2.0502 3.5232 3.2731 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3565 2.1328 0.0554 31 1 2.6480 1.3872 -0.9164 32 1 4.5768 0.2923 1.9903 33 1 3.5132 -0.6635 0.9302 34 1 6.8910 -1.9167 0.1667 35 1 2.8997 1.0649 3.2406 36 1 1.5065 0.4106 2.3465 37 1 -0.3424 1.7976 1.7382 38 1 -1.5797 3.9124 2.1456 39 1 1.9575 5.4622 4.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588632525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:59 Heat of formation + Delta-G solvation = 190.893155 kcal Electronic energy + Delta-G solvation = -23158.862351 eV Core-core repulsion = 19719.540546 eV Total energy + Delta-G solvation = -3439.321804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.69220 -40.26133 -37.41433 -34.80034 -34.03489 -33.02056 -32.35491 -32.20220 -30.99498 -27.64001 -26.53522 -25.14697 -24.71291 -23.56119 -22.81558 -21.70419 -20.92473 -19.45379 -18.95244 -17.38323 -16.78327 -16.51469 -16.34845 -15.57609 -15.23500 -14.77537 -14.31491 -14.16322 -14.07452 -13.64222 -13.43804 -13.07184 -12.92389 -12.59282 -12.24182 -11.85509 -11.67404 -11.42951 -11.37776 -11.32346 -11.18593 -10.87980 -10.85170 -10.62026 -10.48899 -9.92521 -9.72998 -9.41144 -9.27315 -8.95009 -8.74137 -8.42958 -7.29516 -6.02820 -4.03574 0.48447 0.94387 1.29252 1.98127 2.18057 2.65940 3.33250 3.39321 3.42513 3.43636 3.82623 3.94314 4.40521 4.45791 4.77887 4.81393 5.03928 5.10130 5.17885 5.24329 5.33635 5.40840 5.50510 5.61345 5.72235 5.86500 5.96253 6.05414 6.12333 6.14306 6.21117 6.37421 6.58082 6.65724 7.00631 7.04797 7.32256 7.32501 7.77972 7.88924 8.03408 8.11234 8.14535 8.50136 9.03131 9.60295 11.07946 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.003096 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.292874 B = 9042.558152 C = 9605.211706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C 0.080 3.920 4 N -0.518 5.518 5 C 0.192 3.808 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.091 3.909 15 C 0.180 3.820 16 C -0.175 4.175 17 C -0.032 4.032 18 C -0.092 4.092 19 C 0.233 3.767 20 N -0.270 5.270 21 N -0.051 5.051 22 N -0.228 5.228 23 H 0.475 0.525 24 N -0.294 5.294 25 C 0.147 3.853 26 N -0.463 5.463 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.033 0.967 33 H -0.001 1.001 34 H 0.261 0.739 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 13.353 6.942 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.177 4.177 3 C -0.048 4.048 4 N -0.241 5.241 5 C 0.067 3.933 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.037 4.037 15 C 0.042 3.958 16 C -0.195 4.195 17 C -0.060 4.060 18 C -0.098 4.098 19 C -0.047 4.047 20 N -0.144 5.144 21 N -0.046 5.046 22 N -0.074 5.074 23 H 0.330 0.670 24 N -0.145 5.145 25 C -0.014 4.014 26 N -0.171 5.171 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.966 13.963 7.211 21.702 hybrid contribution -0.214 -0.230 -0.790 0.850 sum -15.180 13.733 6.421 21.453 Atomic orbital electron populations 1.23728 0.95954 1.00876 1.05025 1.23938 0.96224 1.01581 0.95979 1.21392 0.94451 0.92365 0.96548 1.62355 1.11973 1.51373 0.98355 1.19816 0.88192 0.87108 0.98177 1.21122 1.11750 1.09202 1.12307 0.91895 1.24956 0.97594 0.95069 0.96863 1.69948 1.30888 1.13901 1.39054 0.86517 0.80978 0.77477 0.82555 1.20638 1.21386 1.19888 1.21062 0.96696 0.90050 0.95938 1.21646 0.90520 0.94626 0.89046 1.22150 0.95901 0.98915 1.02546 1.21538 1.00160 0.91207 0.93071 1.18236 0.95502 0.89481 1.06609 1.23516 0.89333 0.94513 0.97357 1.76085 1.14607 1.04423 1.19254 1.78898 1.11076 1.05857 1.08793 1.47721 1.05478 1.15962 1.38247 0.67048 1.74952 1.18234 0.99157 1.22201 1.22907 0.89595 0.95022 0.93852 1.67708 1.36759 0.99612 1.13007 0.89232 0.89108 0.86801 0.92326 0.88771 0.94939 0.98275 0.92931 0.89213 0.93089 0.83854 0.83874 0.82114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.95 13.34 29.01 0.39 -2.56 16 2 C -0.16 -2.63 7.41 -36.03 -0.27 -2.89 16 3 C 0.08 1.48 5.38 -4.98 -0.03 1.45 16 4 N -0.52 -10.71 4.65 -238.97 -1.11 -11.82 16 5 C 0.19 4.76 4.56 -4.97 -0.02 4.74 16 6 C -0.51 -13.78 8.46 -34.43 -0.29 -14.07 16 7 H 0.06 1.72 7.12 -52.49 -0.37 1.34 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 10 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.09 1.60 5.14 -4.98 -0.03 1.58 16 15 C 0.18 2.84 5.86 -82.54 -0.48 2.36 16 16 C -0.17 -2.28 8.39 -39.49 -0.33 -2.61 16 17 C -0.03 -0.38 9.84 -38.96 -0.38 -0.77 16 18 C -0.09 -1.16 5.89 -104.75 -0.62 -1.78 16 19 C 0.23 2.78 7.95 -156.30 -1.24 1.54 16 20 N -0.27 -3.27 12.31 32.16 0.40 -2.87 16 21 N -0.05 -0.51 13.47 60.35 0.81 0.30 16 22 N -0.23 -1.68 7.90 60.35 0.48 -1.21 16 23 H 0.48 1.11 8.96 -340.36 -3.05 -1.94 16 24 N -0.29 -3.00 12.11 32.17 0.39 -2.61 16 25 C 0.15 2.00 10.87 -17.20 -0.19 1.81 16 26 N -0.46 -7.55 10.26 -9.21 -0.09 -7.65 16 27 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.09 1.09 6.62 -52.49 -0.35 0.74 16 29 H 0.11 2.14 6.83 -52.48 -0.36 1.78 16 30 H 0.06 0.98 6.19 -51.93 -0.32 0.65 16 31 H 0.09 1.93 6.76 -51.93 -0.35 1.58 16 32 H 0.03 0.88 7.86 -51.93 -0.41 0.47 16 33 H 0.00 -0.01 6.35 -51.92 -0.33 -0.34 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.09 1.64 7.81 -51.93 -0.41 1.24 16 36 H 0.05 0.83 6.61 -51.93 -0.34 0.49 16 37 H 0.14 1.67 5.67 -52.48 -0.30 1.38 16 38 H 0.14 1.44 7.97 -52.48 -0.42 1.02 16 39 H 0.16 1.88 7.89 -52.49 -0.41 1.47 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -31.89 332.39 -8.97 -40.86 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.98 Total: -1.32 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.59 Total: -9.74 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 1.61 Total: -51.24 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.89 -8.97 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588632525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.757 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds