Wall clock time and date at job start Fri Apr 10 2020 20:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00116 * 2 1 4 4 N 1.46895 * 109.47138 * 123.08903 * 3 2 1 5 5 C 1.46904 * 111.00067 * 64.02103 * 4 3 2 6 6 C 1.50705 * 109.46915 * 66.03959 * 5 4 3 7 7 H 1.07995 * 120.00257 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99789 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99937 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99623 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47040 * 90.00583 * 10 8 6 12 12 H 1.48501 * 109.46856 * 210.00124 * 10 8 6 13 13 H 1.48496 * 109.47486 * 329.99875 * 10 8 6 14 14 C 1.46893 * 111.00472 * 300.06871 * 4 3 2 15 15 C 1.50700 * 109.46767 * 288.05627 * 14 4 3 16 16 C 1.38313 * 119.49459 * 93.98218 * 15 14 4 17 17 C 1.38417 * 119.28041 * 180.02562 * 16 15 14 18 18 C 1.39730 * 118.31789 * 359.97438 * 17 16 15 19 19 C 1.48464 * 120.53271 * 180.02562 * 18 17 16 20 20 N 1.34048 * 126.67236 * 359.66834 * 19 18 17 21 21 N 1.28993 * 107.26690 * 179.83407 * 20 19 18 22 22 N 1.28727 * 108.94057 * 0.43464 * 21 20 19 23 23 H 0.97004 * 125.34341 * 179.70596 * 22 21 20 24 24 N 1.28877 * 109.32066 * 359.72189 * 22 21 20 25 25 C 1.39259 * 118.93440 * 0.02562 * 18 17 16 26 26 N 1.31756 * 120.60237 * 359.97438 * 25 18 17 27 27 H 1.08007 * 120.00035 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00310 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00164 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46846 * 3.08923 * 3 2 1 31 31 H 1.09003 * 109.47284 * 243.09272 * 3 2 1 32 32 H 1.08991 * 109.47558 * 186.04473 * 5 4 3 33 33 H 1.09007 * 109.46941 * 306.04949 * 5 4 3 34 34 H 0.96999 * 120.00070 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47344 * 168.05603 * 14 4 3 36 36 H 1.09000 * 109.47246 * 48.05139 * 14 4 3 37 37 H 1.08007 * 120.35562 * 0.03910 * 16 15 14 38 38 H 1.08004 * 120.83907 * 179.97438 * 17 16 15 39 39 H 1.07989 * 119.69738 * 179.71833 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9632 1.3511 1.1603 5 6 3.9916 0.3059 1.0709 6 6 4.8988 0.5925 -0.0979 7 1 4.7286 1.4641 -0.7125 8 6 5.9466 -0.2575 -0.3819 9 7 6.1541 -1.3186 0.3668 10 14 7.0714 0.0983 -1.8302 11 1 8.2057 0.9444 -1.3799 12 1 7.5939 -1.1799 -2.3767 13 1 6.3091 0.8128 -2.8853 14 6 2.2089 1.2412 2.4160 15 6 1.4511 2.5207 2.6603 16 6 0.1380 2.6256 2.2385 17 6 -0.5537 3.8030 2.4647 18 6 0.1090 4.8464 3.1163 19 6 -0.5861 6.1305 3.3845 20 7 -1.8480 6.4415 3.0562 21 7 -2.0653 7.6446 3.4677 22 7 -0.9962 8.0947 4.0259 23 1 -0.8953 8.9777 4.4148 24 7 -0.0808 7.1884 3.9868 25 6 1.4321 4.6624 3.5100 26 7 2.0502 3.5232 3.2731 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3565 2.1328 0.0554 31 1 2.6480 1.3872 -0.9164 32 1 4.5768 0.2923 1.9903 33 1 3.5132 -0.6635 0.9302 34 1 6.8910 -1.9167 0.1667 35 1 2.8997 1.0649 3.2406 36 1 1.5065 0.4106 2.3465 37 1 -0.3424 1.7976 1.7382 38 1 -1.5797 3.9124 2.1456 39 1 1.9575 5.4622 4.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588632525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:59 Heat of formation + Delta-G solvation = 167.797353 kcal Electronic energy + Delta-G solvation = -23159.863860 eV Core-core repulsion = 19719.540546 eV Total energy + Delta-G solvation = -3440.323314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.48300 -41.36774 -38.90883 -35.67694 -34.99618 -34.82962 -33.73762 -33.26600 -32.23572 -29.29695 -28.00950 -26.17379 -25.98163 -24.73908 -23.95715 -23.04907 -22.22392 -20.36994 -20.21823 -18.41360 -18.16135 -17.73701 -17.50650 -16.94890 -16.82179 -16.34130 -15.78450 -15.42537 -15.15149 -14.83687 -14.68808 -14.38649 -14.10173 -13.92078 -13.41485 -13.23210 -13.07892 -12.90295 -12.63768 -12.53043 -12.44975 -12.24360 -12.20107 -12.17667 -12.12153 -11.73665 -11.32517 -10.75829 -10.58835 -10.44960 -10.21661 -9.80273 -8.93826 -8.16603 -6.25029 -0.48440 0.13695 0.29051 1.23513 1.40267 1.42174 1.43592 1.44235 1.54091 2.42264 2.57348 2.73959 3.08499 3.16396 3.30486 3.54210 3.81006 3.88569 4.11296 4.11561 4.16458 4.27417 4.32365 4.50391 4.57034 4.65113 4.74965 4.78683 5.00999 5.06072 5.10197 5.15082 5.30586 5.36916 5.58830 5.60518 5.66875 5.79468 5.87402 6.11359 6.36208 6.64237 6.89952 7.01703 7.09340 7.43496 8.94111 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.003096 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.292874 B = 9042.558152 C = 9605.211706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.193 4.193 3 C 0.089 3.911 4 N -0.531 5.531 5 C 0.209 3.791 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.265 1.265 14 C 0.097 3.903 15 C 0.159 3.841 16 C -0.165 4.165 17 C -0.024 4.024 18 C -0.084 4.084 19 C 0.219 3.781 20 N -0.288 5.288 21 N -0.053 5.053 22 N -0.198 5.198 23 H 0.495 0.505 24 N -0.294 5.294 25 C 0.140 3.860 26 N -0.496 5.496 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.065 0.935 32 H -0.001 1.001 33 H -0.018 1.018 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.066 15.206 6.378 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.213 4.213 3 C -0.039 4.039 4 N -0.254 5.254 5 C 0.084 3.916 6 C -0.556 4.556 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.031 4.031 15 C 0.021 3.979 16 C -0.185 4.185 17 C -0.051 4.051 18 C -0.089 4.089 19 C -0.061 4.061 20 N -0.161 5.161 21 N -0.048 5.048 22 N -0.049 5.049 23 H 0.355 0.645 24 N -0.146 5.146 25 C -0.020 4.020 26 N -0.205 5.205 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.017 0.983 33 H 0.000 1.000 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.339 15.849 6.654 24.416 hybrid contribution 0.373 -0.649 -0.514 0.908 sum -16.967 15.200 6.140 23.593 Atomic orbital electron populations 1.24015 0.94472 1.03019 0.99459 1.23524 0.97298 0.99335 1.01113 1.21262 0.94111 0.94250 0.94227 1.62191 1.12954 1.49552 1.00683 1.19390 0.88839 0.87684 0.95725 1.21424 1.12328 1.08967 1.12872 0.92301 1.25814 0.99143 0.94834 0.99592 1.70071 1.31638 1.14877 1.40781 0.85468 0.78862 0.77494 0.79311 1.20205 1.20766 1.18954 1.20949 0.96379 0.92147 0.93624 1.21339 0.91611 0.93839 0.91139 1.22194 0.94571 0.99814 1.01880 1.21791 1.01000 0.90286 0.92062 1.18309 0.95035 0.90071 1.05535 1.23383 0.89595 0.94686 0.98476 1.76063 1.14692 1.05256 1.20048 1.78852 1.11537 1.05402 1.09034 1.47786 1.04285 1.16322 1.36532 0.64545 1.74923 1.18723 0.99215 1.21768 1.23066 0.90297 0.94486 0.94156 1.67583 1.38215 1.00672 1.14044 0.87259 0.86456 0.89894 0.90015 0.91689 0.98292 1.00012 0.92789 0.91319 0.91820 0.82163 0.81388 0.80885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 13.34 67.78 0.90 -3.23 16 2 C -0.19 -6.40 7.41 25.65 0.19 -6.21 16 3 C 0.09 3.31 5.38 85.56 0.46 3.77 16 4 N -0.53 -22.85 4.65 -909.96 -4.23 -27.08 16 5 C 0.21 11.06 4.56 85.56 0.39 11.45 16 6 C -0.52 -29.38 8.46 25.60 0.22 -29.16 16 7 H 0.06 3.32 7.12 -2.91 -0.02 3.29 16 8 C 0.00 0.23 5.46 84.66 0.46 0.70 16 9 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 10 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.10 3.53 5.14 85.56 0.44 3.97 16 15 C 0.16 4.94 5.86 42.57 0.25 5.19 16 16 C -0.16 -3.92 8.39 22.33 0.19 -3.73 16 17 C -0.02 -0.50 9.84 22.67 0.22 -0.28 16 18 C -0.08 -1.94 5.89 -19.94 -0.12 -2.06 16 19 C 0.22 4.71 7.95 137.38 1.09 5.80 16 20 N -0.29 -6.21 12.31 -52.18 -0.64 -6.85 16 21 N -0.05 -0.92 13.47 37.02 0.50 -0.42 16 22 N -0.20 -2.37 7.90 37.02 0.29 -2.07 16 23 H 0.50 0.83 8.96 -347.53 -3.12 -2.29 16 24 N -0.29 -5.27 12.11 -52.13 -0.63 -5.90 16 25 C 0.14 3.69 10.87 84.95 0.92 4.61 16 26 N -0.50 -16.24 10.26 -183.05 -1.88 -18.12 16 27 H 0.11 2.27 8.06 -2.91 -0.02 2.24 16 28 H 0.12 2.24 6.62 -2.91 -0.02 2.22 16 29 H 0.08 3.27 6.83 -2.91 -0.02 3.25 16 30 H 0.08 2.61 6.19 -2.39 -0.01 2.60 16 31 H 0.06 2.75 6.76 -2.39 -0.02 2.73 16 32 H 0.00 -0.06 7.86 -2.39 -0.02 -0.08 16 33 H -0.02 -0.98 6.35 -2.38 -0.02 -1.00 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.07 2.71 7.81 -2.39 -0.02 2.69 16 36 H 0.06 2.10 6.61 -2.39 -0.02 2.08 16 37 H 0.16 3.16 5.67 -2.91 -0.02 3.15 16 38 H 0.17 2.72 7.97 -2.91 -0.02 2.70 16 39 H 0.17 3.91 7.89 -2.92 -0.02 3.88 16 Total: -1.00 -71.45 332.39 -0.67 -72.12 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -2.01 Total: 6.58 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 5.62 Total: -9.18 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -6.30 Total: -116.30 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.45 -0.67 -72.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588632525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.917 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds