Wall clock time and date at job start Fri Apr 10 2020 20:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 119.99799 * 2 1 4 4 H 1.48506 * 109.46955 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46949 * 119.99798 * 3 2 1 6 6 H 1.48495 * 109.47573 * 240.00112 * 3 2 1 7 7 C 1.40033 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99796 * 154.94964 * 7 2 1 9 9 C 1.41534 * 119.99853 * 334.94142 * 7 2 1 10 10 C 1.41171 * 120.99944 * 334.79870 * 9 7 2 11 11 C 1.37594 * 119.01629 * 179.77026 * 10 9 7 12 12 N 1.32083 * 121.10568 * 0.51960 * 11 10 9 13 13 C 1.32464 * 122.23285 * 359.72983 * 12 11 10 14 14 N 1.39478 * 119.57783 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99957 * 354.84621 * 14 13 12 16 16 O 1.21284 * 120.00061 * 5.20055 * 15 14 13 17 17 C 1.50695 * 119.99985 * 185.20423 * 15 14 13 18 18 H 1.08996 * 109.47594 * 300.00173 * 17 15 14 19 19 C 1.53008 * 109.47300 * 60.00241 * 17 15 14 20 20 C 1.52996 * 109.47484 * 119.99697 * 19 17 15 21 21 C 1.53003 * 109.47409 * 300.00370 * 20 19 17 22 22 C 1.53005 * 109.46786 * 59.99560 * 21 20 19 23 23 C 1.52992 * 109.47454 * 0.02562 * 22 21 20 24 24 C 1.52998 * 109.47725 * 59.99501 * 23 22 21 25 25 C 1.52996 * 109.47104 * 300.00566 * 24 23 22 26 26 C 1.38591 * 120.84081 * 0.02562 * 13 12 11 27 27 H 0.97009 * 119.99667 * 174.35114 * 1 2 3 28 28 H 1.08002 * 120.49663 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.44238 * 180.22755 * 11 10 9 30 30 H 0.97000 * 119.99618 * 174.84995 * 14 13 12 31 31 H 1.08997 * 109.46895 * 240.00072 * 19 17 15 32 32 H 1.09001 * 109.46367 * 359.97438 * 19 17 15 33 33 H 1.09000 * 109.47183 * 179.97438 * 20 19 17 34 34 H 1.08995 * 109.46783 * 300.00161 * 21 20 19 35 35 H 1.09000 * 109.47053 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.46972 * 239.99956 * 22 21 20 37 37 H 1.09003 * 109.46777 * 120.00268 * 22 21 20 38 38 H 1.08997 * 109.47289 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.46816 * 60.00093 * 24 23 22 40 40 H 1.08996 * 109.47376 * 179.97438 * 24 23 22 41 41 H 1.09005 * 109.47288 * 239.99203 * 25 24 23 42 42 H 1.09000 * 109.47370 * 119.99726 * 25 24 23 43 43 H 1.08000 * 120.60036 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2762 2.7465 0.0006 5 1 3.0951 1.6965 1.2126 6 1 3.0951 1.6966 -1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0114 -1.2564 -0.3966 9 6 1.3998 -2.3810 0.5181 10 6 0.3730 -2.2991 1.4834 11 6 -0.1926 -3.4608 1.9563 12 7 0.2166 -4.6420 1.5296 13 6 1.1793 -4.7732 0.6293 14 7 1.5684 -6.0480 0.2183 15 6 1.0404 -7.1374 0.8105 16 8 0.1589 -7.0126 1.6341 17 6 1.5453 -8.5106 0.4494 18 1 1.3885 -8.6873 -0.6146 19 6 3.0391 -8.6046 0.7672 20 6 3.2741 -9.7194 1.7884 21 6 2.4986 -9.4089 3.0702 22 6 1.0049 -9.3149 2.7523 23 6 0.7846 -9.5634 1.2589 24 6 1.2972 -10.9576 0.8927 25 6 2.7908 -11.0516 1.2105 26 6 1.8056 -3.6600 0.0913 27 1 -0.4850 -0.8361 -0.0827 28 1 0.0336 -1.3387 1.8424 29 1 -0.9812 -3.4061 2.6922 30 1 2.2191 -6.1504 -0.4938 31 1 3.5916 -8.8259 -0.1459 32 1 3.3833 -7.6558 1.1789 33 1 4.3383 -9.7867 2.0144 34 1 2.8427 -8.4603 3.4822 35 1 2.6657 -10.2034 3.7975 36 1 0.6397 -8.3217 3.0135 37 1 0.4629 -10.0645 3.3289 38 1 -0.2796 -9.4969 1.0326 39 1 0.7551 -11.7071 1.4695 40 1 1.1398 -11.1348 -0.1712 41 1 3.3433 -11.2733 0.2974 42 1 2.9582 -11.8457 1.9382 43 1 2.5904 -3.7716 -0.6422 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334493721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:44 Heat of formation + Delta-G solvation = -27.352274 kcal Electronic energy + Delta-G solvation = -24458.936340 eV Core-core repulsion = 21081.398296 eV Total energy + Delta-G solvation = -3377.538044 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04816 -39.10054 -37.60179 -34.75370 -33.74068 -31.50231 -31.29182 -30.78392 -30.50708 -28.42237 -25.78879 -23.91700 -22.56044 -22.23448 -22.01651 -21.32784 -19.74273 -18.20470 -17.35483 -16.55899 -16.52482 -16.07873 -15.50270 -15.16781 -14.46463 -14.40666 -14.19082 -14.08870 -13.33597 -12.89513 -12.80880 -12.66695 -12.37707 -12.19754 -12.11198 -12.03441 -12.01699 -11.99814 -11.83614 -11.52986 -11.21287 -10.76053 -10.51216 -10.44563 -10.22169 -9.95555 -9.91320 -9.87941 -9.71178 -9.21717 -9.08587 -8.21771 -7.80234 -7.37642 -7.09214 -4.71095 2.42890 2.76810 3.10484 3.19718 3.30665 3.40412 3.53808 3.94426 4.40489 4.53115 4.57817 4.61652 5.02608 5.12290 5.16068 5.21039 5.23512 5.29290 5.35414 5.43746 5.50735 5.50902 5.61246 5.68612 5.83286 5.90479 5.99987 6.01240 6.13885 6.20236 6.29648 6.34130 6.43562 6.46949 6.49527 6.62579 6.68820 6.75487 7.24122 7.29637 7.49364 7.61881 7.87203 7.99769 8.18934 8.52379 8.70405 8.81302 9.57392 9.93759 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.035157 B = 0.003180 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.225937 B = 8802.070939 C = 9109.643055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.041 3.959 3 Si 1.067 2.933 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.131 3.869 10 C -0.281 4.281 11 C 0.125 3.875 12 N -0.560 5.560 13 C 0.360 3.640 14 N -0.663 5.663 15 C 0.503 3.497 16 O -0.472 6.472 17 C -0.102 4.102 18 H 0.092 0.908 19 C -0.108 4.108 20 C -0.085 4.085 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.062 4.062 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.311 4.311 27 H 0.301 0.699 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.405 0.595 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 -15.989 -0.233 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.183 4.183 3 Si 0.890 3.110 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.544 4.544 8 H 0.097 0.903 9 C 0.123 3.877 10 C -0.305 4.305 11 C -0.027 4.027 12 N -0.280 5.280 13 C 0.134 3.866 14 N -0.308 5.308 15 C 0.288 3.712 16 O -0.342 6.342 17 C -0.124 4.124 18 H 0.110 0.890 19 C -0.146 4.146 20 C -0.103 4.103 21 C -0.152 4.152 22 C -0.164 4.164 23 C -0.081 4.081 24 C -0.151 4.151 25 C -0.150 4.150 26 C -0.337 4.337 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.240 0.760 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.705 -15.102 0.795 15.838 hybrid contribution 0.986 -0.943 -0.900 1.635 sum 5.692 -16.046 -0.105 17.026 Atomic orbital electron populations 1.70423 1.08289 1.34502 1.27823 1.27093 0.95645 1.04421 0.91125 0.83604 0.75653 0.73619 0.78077 1.19734 1.19871 1.20041 1.20555 1.02993 0.93697 1.37192 0.90337 1.17602 0.89578 0.91989 0.88552 1.22022 1.05785 0.98428 1.04272 1.21847 0.96739 0.87483 0.96591 1.67295 1.16699 1.26848 1.17118 1.18092 0.92494 0.83087 0.92969 1.43550 1.44454 1.04350 1.38490 1.20684 0.82779 0.85605 0.82106 1.90708 1.27308 1.85743 1.30409 1.21374 0.96783 0.92785 1.01436 0.89032 1.21583 0.93881 0.99581 0.99513 1.21021 0.99281 0.94628 0.95370 1.21556 0.95994 1.01161 0.96458 1.21790 0.95509 1.04265 0.94858 1.20757 0.99241 0.92623 0.95510 1.21561 0.95929 0.96658 1.00944 1.21552 0.96105 0.96853 1.00466 1.21130 1.10144 0.91947 1.10453 0.88548 0.86943 0.85741 0.76017 0.91198 0.91235 0.91191 0.92244 0.92412 0.88702 0.92661 0.90654 0.91845 0.92133 0.92141 0.92141 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 12.35 55.55 0.69 -19.81 16 2 C 0.04 1.00 4.99 -17.34 -0.09 0.92 16 3 Si 1.07 20.86 30.00 -169.99 -5.10 15.76 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 6 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.51 -13.32 9.05 -37.65 -0.34 -13.66 16 8 H 0.08 1.96 7.96 -52.48 -0.42 1.54 16 9 C 0.13 3.43 5.32 -106.56 -0.57 2.86 16 10 C -0.28 -7.23 8.03 -38.70 -0.31 -7.54 16 11 C 0.13 3.09 11.15 -17.68 -0.20 2.90 16 12 N -0.56 -14.10 7.85 -12.52 -0.10 -14.20 16 13 C 0.36 8.38 7.42 -154.70 -1.15 7.23 16 14 N -0.66 -12.09 5.11 -11.49 -0.06 -12.15 16 15 C 0.50 8.87 6.57 -10.99 -0.07 8.80 16 16 O -0.47 -10.19 11.92 5.55 0.07 -10.13 16 17 C -0.10 -1.28 2.57 -91.74 -0.24 -1.52 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 19 C -0.11 -1.17 5.27 -26.73 -0.14 -1.31 16 20 C -0.08 -0.85 3.20 -90.60 -0.29 -1.14 16 21 C -0.11 -1.34 5.71 -26.73 -0.15 -1.49 16 22 C -0.13 -1.70 5.39 -26.73 -0.14 -1.84 16 23 C -0.06 -0.77 2.36 -90.60 -0.21 -0.98 16 24 C -0.11 -1.07 5.71 -26.73 -0.15 -1.23 16 25 C -0.11 -0.98 5.71 -26.71 -0.15 -1.13 16 26 C -0.31 -7.48 9.73 -38.48 -0.37 -7.86 16 27 H 0.30 8.09 6.64 -40.82 -0.27 7.82 16 28 H 0.11 2.92 6.57 -52.49 -0.35 2.57 16 29 H 0.13 2.75 8.06 -52.49 -0.42 2.33 16 30 H 0.41 5.86 8.67 -40.82 -0.35 5.51 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 7.44 -51.93 -0.39 0.48 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.62 5.51 -51.93 -0.29 1.34 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -30.36 335.15 -10.38 -40.74 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.35 Total: 11.74 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -4.58 Total: -16.99 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.53 Total: -46.16 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.10 Total: 15.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.36 -10.38 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334493721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.390 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds