Wall clock time and date at job start Fri Apr 10 2020 20:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47234 * 240.00898 * 3 2 1 5 5 H 1.48503 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46877 * 120.00376 * 3 2 1 7 7 C 1.38886 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00163 * 203.94594 * 7 2 1 9 9 N 1.37218 * 120.00210 * 23.94284 * 7 2 1 10 10 C 1.34774 * 119.99879 * 212.37543 * 9 7 2 11 11 O 1.21279 * 119.99593 * 187.63350 * 10 9 7 12 12 C 1.50696 * 120.00431 * 7.63404 * 10 9 7 13 13 H 1.09000 * 115.54831 * 331.85622 * 12 10 9 14 14 C 1.53067 * 117.53550 * 186.13506 * 12 10 9 15 15 C 1.52993 * 59.98735 * 252.53472 * 14 12 10 16 16 H 1.09001 * 117.49476 * 252.49846 * 15 14 12 17 17 C 1.53000 * 117.50033 * 107.50010 * 15 14 12 18 18 C 1.54268 * 110.03092 * 223.54595 * 17 15 14 19 19 C 1.54971 * 104.15847 * 217.13749 * 18 17 15 20 20 C 1.54897 * 102.77785 * 37.88752 * 19 18 17 21 21 C 1.53883 * 110.03050 * 106.33017 * 17 15 14 22 22 C 1.39429 * 119.99955 * 32.38082 * 9 7 2 23 23 C 1.39065 * 119.69746 * 194.86736 * 22 9 7 24 24 C 1.38382 * 119.09537 * 179.97438 * 23 22 9 25 25 C 1.38822 * 118.49646 * 0.02562 * 24 23 22 26 26 C 1.38145 * 119.31127 * 359.97438 * 25 24 23 27 27 N 1.31890 * 120.85310 * 359.74632 * 26 25 24 28 28 H 0.96998 * 120.00815 * 4.92746 * 1 2 3 29 29 H 1.09004 * 117.49430 * 145.04519 * 14 12 10 30 30 H 1.09008 * 117.51418 * 0.02562 * 14 12 10 31 31 H 1.08998 * 110.01586 * 344.93745 * 17 15 14 32 32 H 1.08995 * 110.48615 * 335.78235 * 18 17 15 33 33 H 1.08994 * 110.48307 * 98.43093 * 18 17 15 34 34 H 1.09000 * 110.71830 * 279.57603 * 19 18 17 35 35 H 1.08996 * 110.92599 * 156.29542 * 19 18 17 36 36 H 1.08994 * 110.48690 * 203.40512 * 20 19 18 37 37 H 1.09002 * 110.48370 * 80.76302 * 20 19 18 38 38 H 1.08998 * 110.03024 * 238.57033 * 21 17 15 39 39 H 1.08994 * 110.02905 * 359.97438 * 21 17 15 40 40 H 1.07996 * 120.45114 * 359.97438 * 23 22 9 41 41 H 1.08000 * 120.74640 * 179.97438 * 24 23 22 42 42 H 1.07992 * 120.34724 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.57893 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0086 -1.2028 -0.0005 8 1 3.0189 -1.2432 0.3791 9 7 1.4111 -2.3398 -0.4833 10 6 1.7151 -3.5394 0.0506 11 8 1.2962 -4.5552 -0.4628 12 6 2.5753 -3.6185 1.2854 13 1 3.2832 -2.8004 1.4183 14 6 3.0045 -5.0087 1.7608 15 6 1.9505 -4.2237 2.5440 16 1 2.2471 -3.8035 3.5051 17 6 0.5003 -4.7027 2.4525 18 6 -0.4441 -3.4966 2.2696 19 6 -1.6983 -3.8677 3.1008 20 6 -1.0922 -4.5771 4.3372 21 6 0.0882 -5.3897 3.7664 22 6 0.4897 -2.2541 -1.5262 23 6 -0.3367 -3.3370 -1.8061 24 6 -1.2471 -3.2383 -2.8436 25 6 -1.2993 -2.0555 -3.5686 26 6 -0.4481 -1.0198 -3.2353 27 7 0.4059 -1.1406 -2.2374 28 1 -0.4851 0.8369 -0.0721 29 1 3.9947 -5.1047 2.2064 30 1 2.6650 -5.8666 1.1802 31 1 0.3879 -5.3949 1.6180 32 1 0.0166 -2.5889 2.6592 33 1 -0.7050 -3.3725 1.2187 34 1 -2.3432 -4.5470 2.5433 35 1 -2.2465 -2.9739 3.3984 36 1 -1.8264 -5.2405 4.7943 37 1 -0.7361 -3.8441 5.0611 38 1 -0.2249 -6.4150 3.5693 39 1 0.9215 -5.3822 4.4689 40 1 -0.2689 -4.2427 -1.2217 41 1 -1.9014 -4.0630 -3.0844 42 1 -1.9987 -1.9459 -4.3841 43 1 -0.4848 -0.0979 -3.7966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:25 Heat of formation + Delta-G solvation = 39.219944 kcal Electronic energy + Delta-G solvation = -25649.763906 eV Core-core repulsion = 22275.112650 eV Total energy + Delta-G solvation = -3374.651256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.15282 -38.75751 -37.40125 -35.35817 -34.77682 -31.78043 -31.13094 -29.40855 -28.31922 -28.15319 -25.15735 -24.23694 -22.34680 -21.61034 -21.38931 -20.16212 -19.53886 -18.77163 -17.71352 -16.54274 -15.72846 -15.36088 -15.17412 -14.88463 -14.71893 -14.17362 -13.92576 -13.71284 -13.42282 -13.08090 -12.91082 -12.49754 -12.31846 -12.13779 -11.73460 -11.41270 -11.28194 -11.18457 -10.98848 -10.84534 -10.79294 -10.61578 -10.51449 -10.42700 -10.29679 -9.99140 -9.62151 -9.56370 -9.29316 -8.98461 -8.60825 -8.43894 -8.03945 -7.10126 -6.35260 -4.08894 2.17303 2.42395 3.17811 3.27543 3.30963 3.52851 3.96969 4.34264 4.46786 4.92224 4.97187 5.03325 5.11284 5.30260 5.39012 5.45822 5.59037 5.68213 5.70605 5.83469 5.84504 5.93019 5.98541 6.02895 6.04658 6.07518 6.16797 6.18078 6.24158 6.26903 6.32732 6.46690 6.49125 6.64336 6.64766 6.71075 6.86728 6.96932 7.02667 7.03327 7.24864 7.41721 7.44332 7.90098 8.33086 8.85903 9.05136 9.55209 9.66903 10.65923 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.006743 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.368370 B = 4151.531340 C = 4863.056860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.091 3.909 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.518 3.482 11 O -0.570 6.570 12 C -0.154 4.154 13 H 0.123 0.877 14 C -0.161 4.161 15 C -0.111 4.111 16 H 0.104 0.896 17 C -0.066 4.066 18 C -0.108 4.108 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.115 4.115 22 C 0.391 3.609 23 C -0.213 4.213 24 C -0.074 4.074 25 C -0.239 4.239 26 C 0.116 3.884 27 N -0.465 5.465 28 H 0.270 0.730 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.160 0.840 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 -5.547 4.186 6.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.122 4.122 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.498 4.498 8 H 0.113 0.887 9 N -0.069 5.069 10 C 0.310 3.690 11 O -0.454 6.454 12 C -0.175 4.175 13 H 0.140 0.860 14 C -0.199 4.199 15 C -0.130 4.130 16 H 0.122 0.878 17 C -0.084 4.084 18 C -0.145 4.145 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.152 4.152 22 C 0.162 3.838 23 C -0.235 4.235 24 C -0.101 4.101 25 C -0.261 4.261 26 C -0.044 4.044 27 N -0.179 5.179 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.177 0.823 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.537 -5.235 4.311 6.803 hybrid contribution -0.232 0.639 -0.375 0.776 sum -0.769 -4.596 3.936 6.100 Atomic orbital electron populations 1.69918 1.06736 1.28651 1.39933 1.24954 0.94558 0.99377 0.93292 0.86298 0.79585 0.81608 0.78782 1.19613 1.21118 1.20189 1.19146 0.98511 0.85852 1.46318 0.88703 1.41015 1.34562 1.06946 1.24409 1.19530 0.82518 0.82538 0.84430 1.90386 1.56281 1.35719 1.62983 1.22071 1.03002 0.97890 0.94548 0.85961 1.23076 0.98774 0.94905 1.03113 1.22340 0.94004 1.02274 0.94367 0.87774 1.21418 0.91989 0.97411 0.97576 1.22295 0.94131 0.97488 1.00616 1.22484 0.97863 0.99597 0.96208 1.22355 0.97248 0.98722 0.97735 1.22165 0.97702 0.98625 0.96747 1.18382 0.89609 0.88799 0.87037 1.22611 0.97528 1.02223 1.01171 1.21188 0.96866 0.96798 0.95203 1.21652 1.04440 0.96004 1.04006 1.22222 0.91969 0.97338 0.92906 1.67168 1.21859 1.24121 1.04707 0.91965 0.88955 0.88019 0.90135 0.91074 0.91378 0.92190 0.92053 0.92468 0.91978 0.92360 0.91995 0.82262 0.86678 0.87001 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.76 11.42 55.49 0.63 -21.12 16 2 C 0.09 2.30 4.14 -17.49 -0.07 2.22 16 3 Si 0.91 20.08 29.62 -169.99 -5.03 15.04 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.37 -9.44 8.48 -14.90 -0.13 -9.57 16 8 H 0.10 2.28 6.55 -52.49 -0.34 1.93 16 9 N -0.36 -9.07 2.79 -60.71 -0.17 -9.24 16 10 C 0.52 11.83 5.20 -10.99 -0.06 11.77 16 11 O -0.57 -13.48 11.85 5.56 0.07 -13.42 16 12 C -0.15 -2.94 5.43 -91.74 -0.50 -3.44 16 13 H 0.12 2.30 6.51 -51.93 -0.34 1.96 16 14 C -0.16 -2.54 9.70 -26.70 -0.26 -2.80 16 15 C -0.11 -1.81 4.72 -90.62 -0.43 -2.24 16 16 H 0.10 1.53 8.04 -51.93 -0.42 1.12 16 17 C -0.07 -1.09 2.39 -89.50 -0.21 -1.31 16 18 C -0.11 -2.02 5.51 -25.03 -0.14 -2.15 16 19 C -0.12 -1.93 6.91 -24.69 -0.17 -2.10 16 20 C -0.12 -1.62 6.83 -25.07 -0.17 -1.79 16 21 C -0.11 -1.56 6.46 -25.61 -0.17 -1.72 16 22 C 0.39 9.95 6.22 -154.63 -0.96 8.98 16 23 C -0.21 -4.96 8.87 -39.22 -0.35 -5.31 16 24 C -0.07 -1.50 10.17 -39.31 -0.40 -1.90 16 25 C -0.24 -4.60 10.11 -39.40 -0.40 -4.99 16 26 C 0.12 2.48 11.18 -17.56 -0.20 2.28 16 27 N -0.46 -11.65 7.21 -12.34 -0.09 -11.74 16 28 H 0.27 6.95 8.32 -40.82 -0.34 6.61 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.69 7.65 -51.92 -0.40 1.30 16 31 H 0.08 1.50 6.92 -51.93 -0.36 1.14 16 32 H 0.07 1.45 7.85 -51.93 -0.41 1.05 16 33 H 0.07 1.52 7.56 -51.93 -0.39 1.13 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.77 7.61 -51.93 -0.39 0.37 16 40 H 0.16 3.79 5.16 -52.90 -0.27 3.52 16 41 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.14 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -28.43 341.70 -10.31 -38.74 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.26 Total: 10.63 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -4.60 Total: -14.06 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.38 Total: -42.10 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.42 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.43 -10.31 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.963 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds