Wall clock time and date at job start Fri Apr 10 2020 20:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47234 * 240.00898 * 3 2 1 5 5 H 1.48503 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46877 * 120.00376 * 3 2 1 7 7 C 1.38886 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00163 * 203.94594 * 7 2 1 9 9 N 1.37218 * 120.00210 * 23.94284 * 7 2 1 10 10 C 1.34774 * 119.99879 * 212.37543 * 9 7 2 11 11 O 1.21279 * 119.99593 * 187.63350 * 10 9 7 12 12 C 1.50696 * 120.00431 * 7.63404 * 10 9 7 13 13 H 1.09000 * 115.54831 * 331.85622 * 12 10 9 14 14 C 1.53067 * 117.53550 * 186.13506 * 12 10 9 15 15 C 1.52993 * 59.98735 * 252.53472 * 14 12 10 16 16 H 1.09001 * 117.49476 * 252.49846 * 15 14 12 17 17 C 1.53000 * 117.50033 * 107.50010 * 15 14 12 18 18 C 1.54268 * 110.03092 * 223.54595 * 17 15 14 19 19 C 1.54971 * 104.15847 * 217.13749 * 18 17 15 20 20 C 1.54897 * 102.77785 * 37.88752 * 19 18 17 21 21 C 1.53883 * 110.03050 * 106.33017 * 17 15 14 22 22 C 1.39429 * 119.99955 * 32.38082 * 9 7 2 23 23 C 1.39065 * 119.69746 * 194.86736 * 22 9 7 24 24 C 1.38382 * 119.09537 * 179.97438 * 23 22 9 25 25 C 1.38822 * 118.49646 * 0.02562 * 24 23 22 26 26 C 1.38145 * 119.31127 * 359.97438 * 25 24 23 27 27 N 1.31890 * 120.85310 * 359.74632 * 26 25 24 28 28 H 0.96998 * 120.00815 * 4.92746 * 1 2 3 29 29 H 1.09004 * 117.49430 * 145.04519 * 14 12 10 30 30 H 1.09008 * 117.51418 * 0.02562 * 14 12 10 31 31 H 1.08998 * 110.01586 * 344.93745 * 17 15 14 32 32 H 1.08995 * 110.48615 * 335.78235 * 18 17 15 33 33 H 1.08994 * 110.48307 * 98.43093 * 18 17 15 34 34 H 1.09000 * 110.71830 * 279.57603 * 19 18 17 35 35 H 1.08996 * 110.92599 * 156.29542 * 19 18 17 36 36 H 1.08994 * 110.48690 * 203.40512 * 20 19 18 37 37 H 1.09002 * 110.48370 * 80.76302 * 20 19 18 38 38 H 1.08998 * 110.03024 * 238.57033 * 21 17 15 39 39 H 1.08994 * 110.02905 * 359.97438 * 21 17 15 40 40 H 1.07996 * 120.45114 * 359.97438 * 23 22 9 41 41 H 1.08000 * 120.74640 * 179.97438 * 24 23 22 42 42 H 1.07992 * 120.34724 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.57893 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0086 -1.2028 -0.0005 8 1 3.0189 -1.2432 0.3791 9 7 1.4111 -2.3398 -0.4833 10 6 1.7151 -3.5394 0.0506 11 8 1.2962 -4.5552 -0.4628 12 6 2.5753 -3.6185 1.2854 13 1 3.2832 -2.8004 1.4183 14 6 3.0045 -5.0087 1.7608 15 6 1.9505 -4.2237 2.5440 16 1 2.2471 -3.8035 3.5051 17 6 0.5003 -4.7027 2.4525 18 6 -0.4441 -3.4966 2.2696 19 6 -1.6983 -3.8677 3.1008 20 6 -1.0922 -4.5771 4.3372 21 6 0.0882 -5.3897 3.7664 22 6 0.4897 -2.2541 -1.5262 23 6 -0.3367 -3.3370 -1.8061 24 6 -1.2471 -3.2383 -2.8436 25 6 -1.2993 -2.0555 -3.5686 26 6 -0.4481 -1.0198 -3.2353 27 7 0.4059 -1.1406 -2.2374 28 1 -0.4851 0.8369 -0.0721 29 1 3.9947 -5.1047 2.2064 30 1 2.6650 -5.8666 1.1802 31 1 0.3879 -5.3949 1.6180 32 1 0.0166 -2.5889 2.6592 33 1 -0.7050 -3.3725 1.2187 34 1 -2.3432 -4.5470 2.5433 35 1 -2.2465 -2.9739 3.3984 36 1 -1.8264 -5.2405 4.7943 37 1 -0.7361 -3.8441 5.0611 38 1 -0.2249 -6.4150 3.5693 39 1 0.9215 -5.3822 4.4689 40 1 -0.2689 -4.2427 -1.2217 41 1 -1.9014 -4.0630 -3.0844 42 1 -1.9987 -1.9459 -4.3841 43 1 -0.4848 -0.0979 -3.7966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:23 Heat of formation + Delta-G solvation = 26.451038 kcal Electronic energy + Delta-G solvation = -25650.317607 eV Core-core repulsion = 22275.112650 eV Total energy + Delta-G solvation = -3375.204957 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.83578 -40.30720 -38.91021 -36.91922 -36.40306 -33.66680 -32.85546 -31.09758 -29.60802 -29.43470 -27.04309 -25.84038 -24.05845 -23.04783 -22.86904 -21.48061 -20.99805 -20.38940 -19.40701 -18.16930 -17.25494 -17.04159 -16.88084 -16.45547 -16.37008 -15.65189 -15.43577 -15.31852 -15.05316 -14.67344 -14.21300 -14.17257 -13.90659 -13.68217 -13.38743 -13.09418 -12.95975 -12.62309 -12.59565 -12.41731 -12.18677 -12.02561 -11.91212 -11.86533 -11.51716 -11.38119 -11.31689 -10.98156 -10.75471 -10.71077 -10.36833 -10.19388 -9.81275 -8.91897 -8.23653 -6.02861 0.47658 0.72907 1.41151 1.48454 1.54260 1.86897 2.25207 2.61619 2.99466 3.11713 3.55988 3.65106 3.76641 3.82951 4.04023 4.05993 4.09579 4.18165 4.21014 4.42521 4.53314 4.56540 4.58936 4.61585 4.69237 4.77726 4.77942 4.84056 4.90389 4.93667 5.02546 5.11333 5.16980 5.21895 5.25389 5.34336 5.40009 5.45054 5.49256 5.51687 5.57278 5.61101 5.75112 6.09844 6.48279 7.06365 7.18407 7.76418 7.86795 8.75699 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.006743 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.368370 B = 4151.531340 C = 4863.056860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.055 3.945 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.385 4.385 8 H 0.099 0.901 9 N -0.380 5.380 10 C 0.513 3.487 11 O -0.588 6.588 12 C -0.187 4.187 13 H 0.121 0.879 14 C -0.133 4.133 15 C -0.102 4.102 16 H 0.129 0.871 17 C -0.063 4.063 18 C -0.102 4.102 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.107 4.107 22 C 0.361 3.639 23 C -0.237 4.237 24 C -0.072 4.072 25 C -0.222 4.222 26 C 0.098 3.902 27 N -0.497 5.497 28 H 0.265 0.735 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.018 0.982 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 -6.247 5.194 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.154 4.154 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.511 4.511 8 H 0.117 0.883 9 N -0.088 5.088 10 C 0.306 3.694 11 O -0.474 6.474 12 C -0.208 4.208 13 H 0.139 0.861 14 C -0.171 4.171 15 C -0.120 4.120 16 H 0.147 0.853 17 C -0.082 4.082 18 C -0.140 4.140 19 C -0.161 4.161 20 C -0.151 4.151 21 C -0.145 4.145 22 C 0.132 3.868 23 C -0.260 4.260 24 C -0.098 4.098 25 C -0.244 4.244 26 C -0.062 4.062 27 N -0.212 5.212 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.176 0.824 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.545 -5.944 5.325 7.999 hybrid contribution -0.306 0.807 -0.824 1.193 sum -0.851 -5.137 4.502 6.883 Atomic orbital electron populations 1.70040 1.07966 1.28675 1.41667 1.25651 0.95066 1.01806 0.92888 0.85410 0.78358 0.78071 0.78848 1.20278 1.21228 1.18622 1.19401 0.98704 0.86490 1.46459 0.88331 1.41239 1.35100 1.07423 1.25059 1.20173 0.82305 0.81822 0.85091 1.90351 1.57189 1.36048 1.63770 1.22090 1.03999 1.00264 0.94471 0.86106 1.23162 1.00237 0.92245 1.01421 1.22529 0.93993 1.01432 0.94066 0.85293 1.21362 0.91961 0.96042 0.98790 1.22121 0.96369 0.97563 0.97904 1.22484 0.96506 0.99957 0.97122 1.22331 0.97449 0.98958 0.96395 1.22139 0.98603 0.98781 0.94957 1.18729 0.90512 0.89657 0.87904 1.22630 0.98989 1.01596 1.02773 1.21640 0.96036 0.98385 0.93742 1.22082 1.03703 0.94485 1.04092 1.22855 0.91765 0.99171 0.92382 1.67128 1.23609 1.24423 1.06028 0.92557 0.85254 0.89138 0.92699 0.93552 0.96280 0.92067 0.92249 0.89927 0.91155 0.91122 0.89813 0.83675 0.83086 0.82414 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.93 11.42 21.65 0.25 -46.68 16 2 C 0.06 2.87 4.14 84.91 0.35 3.22 16 3 Si 0.97 42.03 29.62 68.60 2.03 44.06 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.39 -20.30 8.48 84.01 0.71 -19.59 16 8 H 0.10 4.92 6.55 -2.91 -0.02 4.90 16 9 N -0.38 -20.06 2.79 -464.37 -1.30 -21.36 16 10 C 0.51 24.64 5.20 87.66 0.46 25.10 16 11 O -0.59 -29.45 11.85 -3.03 -0.04 -29.48 16 12 C -0.19 -7.27 5.43 -11.52 -0.06 -7.34 16 13 H 0.12 4.65 6.51 -2.39 -0.02 4.63 16 14 C -0.13 -4.02 9.70 30.61 0.30 -3.72 16 15 C -0.10 -3.23 4.72 -10.80 -0.05 -3.28 16 16 H 0.13 3.47 8.04 -2.39 -0.02 3.45 16 17 C -0.06 -2.10 2.39 -10.07 -0.02 -2.12 16 18 C -0.10 -3.99 5.51 31.70 0.17 -3.82 16 19 C -0.12 -3.83 6.91 31.92 0.22 -3.61 16 20 C -0.11 -2.72 6.83 31.67 0.22 -2.50 16 21 C -0.11 -2.64 6.46 31.32 0.20 -2.43 16 22 C 0.36 19.19 6.22 132.90 0.83 20.01 16 23 C -0.24 -11.53 8.87 22.50 0.20 -11.33 16 24 C -0.07 -2.86 10.17 22.44 0.23 -2.63 16 25 C -0.22 -8.14 10.11 22.39 0.23 -7.91 16 26 C 0.10 4.15 11.18 84.66 0.95 5.09 16 27 N -0.50 -25.64 7.21 -192.95 -1.39 -27.03 16 28 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 29 H 0.13 2.94 8.14 -2.38 -0.02 2.92 16 30 H 0.09 2.96 7.65 -2.38 -0.02 2.94 16 31 H 0.05 2.11 6.92 -2.39 -0.02 2.09 16 32 H 0.05 2.00 7.85 -2.39 -0.02 1.98 16 33 H 0.02 0.90 7.56 -2.39 -0.02 0.88 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.74 7.61 -2.39 -0.02 1.72 16 40 H 0.15 7.38 5.16 -9.40 -0.05 7.34 16 41 H 0.15 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.16 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.16 5.70 8.06 -2.91 -0.02 5.67 16 Total: -1.00 -66.52 341.70 5.44 -61.08 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.97 Total: 36.26 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.92 Total: -16.86 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -2.44 Total: -95.06 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.04 Total: -29.48 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -66.52 5.44 -61.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.528 kcal (2) G-P(sol) polarization free energy of solvation -66.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds