Wall clock time and date at job start Fri Apr 10 2020 20:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48505 * 109.46829 * 269.99711 * 3 2 1 5 5 H 1.48495 * 109.47182 * 29.99845 * 3 2 1 6 6 H 1.48501 * 109.46884 * 149.99920 * 3 2 1 7 7 C 1.38810 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99830 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.49328 * 126.57416 * 0.68462 * 9 7 2 11 11 C 1.55471 * 106.89791 * 174.41295 * 10 9 7 12 12 C 1.53432 * 101.67637 * 336.94618 * 11 10 9 13 13 H 1.08993 * 111.75406 * 281.77218 * 12 11 10 14 14 C 1.45023 * 126.55975 * 179.97438 * 9 7 2 15 15 H 1.08997 * 108.26159 * 96.05212 * 14 9 7 16 16 C 1.51084 * 119.18978 * 331.17588 * 14 9 7 17 17 C 1.53870 * 107.34190 * 176.11306 * 16 14 9 18 18 C 1.52719 * 111.52866 * 56.92272 * 17 16 14 19 19 N 1.45720 * 116.37639 * 152.72299 * 12 11 10 20 20 C 1.34783 * 122.22674 * 9.89305 * 19 12 11 21 21 O 1.21553 * 120.00132 * 4.06346 * 20 19 12 22 22 C 1.47855 * 119.99590 * 184.06839 * 20 19 12 23 23 C 1.39575 * 120.14173 * 311.54211 * 22 20 19 24 24 C 1.37958 * 119.84794 * 179.72579 * 23 22 20 25 25 C 1.38359 * 120.14521 * 0.27835 * 24 23 22 26 26 C 1.38351 * 120.29523 * 359.97438 * 25 24 23 27 27 C 1.37959 * 120.14585 * 0.02671 * 26 25 24 28 28 H 0.97003 * 120.00194 * 0.02562 * 1 2 3 29 29 H 1.08993 * 110.36882 * 54.84592 * 10 9 7 30 30 H 1.08997 * 109.64569 * 293.57344 * 10 9 7 31 31 H 1.09002 * 110.98220 * 218.85144 * 11 10 9 32 32 H 1.09004 * 111.02039 * 95.06284 * 11 10 9 33 33 H 1.08996 * 109.88320 * 56.65288 * 16 14 9 34 34 H 1.09004 * 109.94192 * 295.59906 * 16 14 9 35 35 H 1.09003 * 109.06847 * 296.39854 * 17 16 14 36 36 H 1.09001 * 109.07039 * 177.45307 * 17 16 14 37 37 H 1.09000 * 109.15974 * 191.06977 * 18 17 16 38 38 H 1.08993 * 109.11912 * 71.84812 * 18 17 16 39 39 H 1.07999 * 120.07420 * 359.97438 * 23 22 20 40 40 H 1.08000 * 119.92474 * 180.29237 * 24 23 22 41 41 H 1.08000 * 119.85316 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.92965 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.07741 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1579 -2.5591 -0.0143 11 6 -0.4358 -4.0825 -0.1527 12 6 0.8687 -4.5795 -0.7893 13 1 0.9039 -4.3659 -1.8575 14 6 1.9024 -3.7186 0.0005 15 1 1.9381 -4.0754 1.0298 16 6 3.2557 -3.9350 -0.6354 17 6 3.6450 -5.4043 -0.3966 18 6 2.5915 -6.3605 -0.9518 19 7 1.2343 -5.9641 -0.5195 20 6 0.3890 -6.8273 0.0780 21 8 -0.7454 -6.4811 0.3444 22 6 0.8416 -8.1953 0.4095 23 6 1.4992 -8.9676 -0.5493 24 6 1.9240 -10.2411 -0.2316 25 6 1.6943 -10.7552 1.0322 26 6 1.0384 -9.9968 1.9855 27 6 0.6084 -8.7219 1.6809 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5931 -2.0233 -0.8578 30 1 -0.5790 -2.1874 0.9198 31 1 -1.2857 -4.2661 -0.8101 32 1 -0.5936 -4.5414 0.8233 33 1 3.9917 -3.2768 -0.1737 34 1 3.1998 -3.7356 -1.7056 35 1 3.7515 -5.5750 0.6747 36 1 4.5992 -5.6037 -0.8843 37 1 2.8001 -7.3690 -0.5947 38 1 2.6381 -6.3498 -2.0407 39 1 1.6787 -8.5675 -1.5363 40 1 2.4371 -10.8380 -0.9711 41 1 2.0285 -11.7529 1.2756 42 1 0.8626 -10.4038 2.9703 43 1 0.0969 -8.1307 2.4261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049296813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:38 Heat of formation + Delta-G solvation = 35.012972 kcal Electronic energy + Delta-G solvation = -25003.194663 eV Core-core repulsion = 21628.360979 eV Total energy + Delta-G solvation = -3374.833684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62323 -38.93890 -37.42377 -35.39625 -32.62390 -32.38863 -31.16078 -31.11850 -28.83351 -28.14570 -25.18563 -24.45348 -23.00355 -22.80698 -21.43905 -20.85638 -19.70393 -19.13857 -17.17458 -16.65183 -16.26171 -15.77120 -15.28455 -15.00132 -14.75859 -14.38521 -14.16888 -14.04736 -13.63106 -13.61065 -13.27970 -12.92036 -12.65811 -12.41738 -12.24852 -11.98927 -11.65548 -11.54065 -11.31969 -11.07218 -10.83235 -10.68104 -10.49541 -10.43979 -10.08442 -9.99768 -9.83900 -9.58068 -9.23474 -9.14154 -8.91930 -8.57885 -8.21514 -6.80882 -5.68093 -3.02006 0.87197 1.16362 2.84567 3.13815 3.41486 3.46297 3.48580 3.64195 4.44136 4.51409 4.68076 4.72754 4.87350 4.87942 5.10293 5.19735 5.27142 5.33340 5.37581 5.44807 5.56201 5.62994 5.70153 5.78443 5.79224 5.85990 6.01356 6.08796 6.14798 6.21999 6.24632 6.27425 6.31473 6.41215 6.56988 6.68745 6.73129 6.80551 6.90279 7.18418 7.59528 7.64923 7.70857 7.85410 8.25353 8.38760 9.20038 9.84786 10.53679 11.44333 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.003853 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.039757 B = 7264.826796 C = 7753.922230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.116 3.884 13 H 0.081 0.919 14 C 0.160 3.840 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.100 3.900 19 N -0.592 5.592 20 C 0.557 3.443 21 O -0.526 6.526 22 C -0.117 4.117 23 C -0.094 4.094 24 C -0.127 4.127 25 C -0.106 4.106 26 C -0.124 4.124 27 C -0.071 4.071 28 H 0.252 0.748 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.142 -20.917 -0.937 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.048 3.952 11 C -0.166 4.166 12 C 0.012 3.988 13 H 0.099 0.901 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.168 4.168 18 C -0.022 4.022 19 N -0.324 5.324 20 C 0.345 3.655 21 O -0.403 6.403 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.125 4.125 26 C -0.142 4.142 27 C -0.090 4.090 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.467 -20.464 -0.765 21.196 hybrid contribution 0.561 0.894 -0.082 1.058 sum 6.027 -19.570 -0.847 20.495 Atomic orbital electron populations 1.69944 1.04882 1.25042 1.56848 1.24800 0.95666 0.97597 1.02332 0.86150 0.78592 0.83694 0.77505 1.21658 1.21705 1.20745 1.18991 0.90302 0.82244 1.43855 0.90375 1.44334 1.01736 0.99292 1.86554 1.21906 0.83470 0.88655 1.01161 1.22914 0.94604 0.97875 1.01215 1.22558 0.98753 0.78293 0.99233 0.90126 1.20850 0.91331 0.87165 0.95626 0.96484 1.21443 0.98575 0.94205 1.01250 1.21901 0.97625 0.95670 1.01596 1.22019 0.81665 0.99205 0.99316 1.47958 1.14297 1.11484 1.58668 1.18290 0.85039 0.84333 0.77857 1.90805 1.18657 1.77256 1.53569 1.20080 1.01208 0.95054 0.95666 1.21358 0.96420 0.94373 0.99096 1.21092 1.00868 0.95454 0.97039 1.21301 0.97930 0.99740 0.93487 1.21129 0.99025 0.94249 0.99820 1.21218 0.97021 0.95360 0.95403 0.93733 0.92534 0.94061 0.91919 0.90365 0.91461 0.91780 0.91841 0.90929 0.89439 0.91482 0.85270 0.85546 0.85818 0.85486 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.38 10.47 55.49 0.58 -26.80 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.26 9.95 -15.06 -0.15 -6.41 16 8 H 0.08 2.07 7.31 -52.48 -0.38 1.69 16 9 N -0.59 -15.34 3.38 -162.19 -0.55 -15.89 16 10 C 0.17 4.39 5.49 -1.16 -0.01 4.38 16 11 C -0.13 -2.76 4.95 -25.19 -0.12 -2.88 16 12 C 0.12 2.23 3.33 -66.52 -0.22 2.01 16 13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 14 C 0.16 3.36 2.59 -68.08 -0.18 3.18 16 15 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 16 C -0.12 -1.99 5.45 -27.24 -0.15 -2.14 16 17 C -0.13 -1.66 5.93 -26.42 -0.16 -1.82 16 18 C 0.10 1.22 5.31 -3.44 -0.02 1.21 16 19 N -0.59 -9.50 2.90 -164.78 -0.48 -9.98 16 20 C 0.56 9.29 7.21 -12.32 -0.09 9.20 16 21 O -0.53 -10.59 13.97 5.32 0.07 -10.51 16 22 C -0.12 -1.54 5.15 -104.96 -0.54 -2.08 16 23 C -0.09 -0.97 7.40 -39.19 -0.29 -1.26 16 24 C -0.13 -1.06 10.03 -39.64 -0.40 -1.46 16 25 C -0.11 -0.87 10.04 -39.50 -0.40 -1.26 16 26 C -0.12 -1.16 10.03 -39.64 -0.40 -1.55 16 27 C -0.07 -0.86 9.72 -39.18 -0.38 -1.24 16 28 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 29 H 0.06 1.56 7.23 -51.93 -0.38 1.18 16 30 H 0.04 1.15 7.79 -51.93 -0.40 0.75 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.77 6.34 -51.93 -0.33 1.44 16 33 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 34 H 0.06 1.10 8.12 -51.93 -0.42 0.67 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.90 4.61 -51.93 -0.24 0.66 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.13 1.17 6.88 -52.49 -0.36 0.81 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -32.61 334.95 -10.21 -42.82 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.27 Total: 0.58 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -3.59 Total: -2.43 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.45 Total: -52.66 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.61 -10.21 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049296813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.832 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds