Wall clock time and date at job start Fri Apr 10 2020 20:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.88374 * 25.32926 * 10 9 7 12 12 C 1.53954 * 113.66156 * 253.98627 * 10 9 7 13 13 C 1.54146 * 87.22541 * 220.81938 * 12 10 9 14 14 H 1.09000 * 113.71821 * 139.14572 * 13 12 10 15 15 N 1.46493 * 113.66795 * 270.16811 * 13 12 10 16 16 C 1.34776 * 120.00352 * 252.22809 * 15 13 12 17 17 O 1.21548 * 119.99632 * 359.97438 * 16 15 13 18 18 C 1.47846 * 120.00138 * 179.97438 * 16 15 13 19 19 C 1.39575 * 120.14400 * 359.72337 * 18 16 15 20 20 C 1.37957 * 119.85287 * 179.74678 * 19 18 16 21 21 C 1.38363 * 120.14422 * 0.52652 * 20 19 18 22 22 C 1.38360 * 120.29063 * 359.74812 * 21 20 19 23 23 C 1.37954 * 120.14459 * 359.97409 * 22 21 20 24 24 C 1.52910 * 113.66694 * 156.67680 * 10 9 7 25 25 C 1.52907 * 121.13370 * 13.65147 * 24 10 9 26 26 C 1.53957 * 86.78111 * 209.38202 * 25 24 10 27 27 C 1.52913 * 121.13686 * 265.08976 * 24 10 9 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 30 30 H 1.08992 * 113.58037 * 335.39803 * 12 10 9 31 31 H 1.08996 * 113.57679 * 106.18835 * 12 10 9 32 32 H 0.97008 * 119.99519 * 72.22252 * 15 13 12 33 33 H 1.08005 * 120.07354 * 0.02562 * 19 18 16 34 34 H 1.08001 * 119.92694 * 180.27601 * 20 19 18 35 35 H 1.07999 * 119.85614 * 179.76338 * 21 20 19 36 36 H 1.07993 * 119.92675 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.07325 * 180.02562 * 23 22 21 38 38 H 1.08996 * 113.66418 * 323.84731 * 25 24 10 39 39 H 1.09000 * 113.66271 * 94.91055 * 25 24 10 40 40 H 1.09000 * 113.57697 * 270.12973 * 26 25 24 41 41 H 1.08999 * 113.58005 * 139.33537 * 26 25 24 42 42 H 1.08997 * 113.66056 * 265.08926 * 27 24 10 43 43 H 1.08999 * 113.65847 * 36.05247 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5383 -3.2916 -0.4290 12 6 4.7576 -2.8116 1.3566 13 6 5.9863 -3.2998 0.5642 14 1 6.9383 -3.0181 1.0139 15 7 5.9257 -4.7174 0.1998 16 6 6.7224 -5.6081 0.8230 17 8 7.4915 -5.2351 1.6871 18 6 6.6608 -7.0389 0.4556 19 6 5.7746 -7.4714 -0.5322 20 6 5.7258 -8.8070 -0.8740 21 6 6.5452 -9.7188 -0.2323 22 6 7.4218 -9.2975 0.7517 23 6 7.4846 -7.9639 1.0990 24 6 5.5331 -2.3590 -0.5528 25 6 6.1971 -0.9969 -0.7574 26 6 6.9866 -1.6513 -1.9058 27 6 5.8367 -2.6687 -2.0192 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3620 0.0007 30 1 4.9575 -1.9376 1.9764 31 1 4.2425 -3.6056 1.8973 32 1 5.3120 -5.0150 -0.4900 33 1 5.1316 -6.7612 -1.0310 34 1 5.0437 -9.1423 -1.6412 35 1 6.5004 -10.7639 -0.5009 36 1 8.0584 -10.0143 1.2490 37 1 8.1696 -7.6362 1.8670 38 1 5.5081 -0.2196 -1.0877 39 1 6.8210 -0.6842 0.0798 40 1 7.9308 -2.0941 -1.5889 41 1 7.0913 -1.0122 -2.7826 42 1 6.1728 -3.6915 -2.1898 43 1 5.0457 -2.3626 -2.7037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078538457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:14 Heat of formation + Delta-G solvation = 50.514107 kcal Electronic energy + Delta-G solvation = -24118.244245 eV Core-core repulsion = 20744.082741 eV Total energy + Delta-G solvation = -3374.161504 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89231 -39.75662 -38.13653 -35.21547 -34.26649 -32.60796 -31.28781 -31.15859 -30.15903 -25.66410 -25.22476 -24.33116 -23.71801 -22.77901 -21.85713 -20.83525 -20.16205 -18.65555 -17.96253 -17.30193 -16.46726 -15.89788 -15.45242 -15.28474 -14.97141 -14.76311 -14.63213 -14.40721 -13.88726 -13.70282 -13.12181 -12.90577 -12.80000 -12.53628 -12.22451 -12.19661 -11.96463 -11.92031 -11.52814 -11.37016 -11.06007 -10.97303 -10.79597 -10.28262 -10.18355 -9.99839 -9.90912 -9.70800 -9.45726 -9.29181 -9.24932 -8.87766 -8.80688 -7.28963 -5.81501 -3.16895 0.62857 1.08797 2.76606 3.06967 3.33147 3.36749 3.42459 3.67637 4.49859 4.53415 4.54687 4.61830 4.65833 4.78444 4.86181 4.91115 5.04733 5.09162 5.11550 5.21579 5.32245 5.49896 5.53660 5.60407 5.69553 5.76394 5.87392 5.89973 5.96194 6.03710 6.04947 6.06241 6.12640 6.15497 6.18941 6.24966 6.40383 6.54822 6.59331 6.60318 6.76554 6.91669 7.52191 7.94879 8.18979 8.38400 9.16189 9.88774 10.08962 11.36738 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.003570 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.794194 B = 7842.055906 C = 8349.318005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.733 5.733 10 C 0.186 3.814 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.144 3.856 14 H 0.099 0.901 15 N -0.699 5.699 16 C 0.559 3.441 17 O -0.540 6.540 18 C -0.131 4.131 19 C -0.086 4.086 20 C -0.127 4.127 21 C -0.098 4.098 22 C -0.130 4.130 23 C -0.062 4.062 24 C -0.128 4.128 25 C -0.110 4.110 26 C -0.138 4.138 27 C -0.123 4.123 28 H 0.260 0.740 29 H 0.364 0.636 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.401 0.599 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.760 -16.179 -3.408 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.373 5.373 10 C 0.075 3.925 11 H 0.100 0.900 12 C -0.216 4.216 13 C 0.039 3.961 14 H 0.117 0.883 15 N -0.349 5.349 16 C 0.346 3.654 17 O -0.418 6.418 18 C -0.134 4.134 19 C -0.104 4.104 20 C -0.145 4.145 21 C -0.116 4.116 22 C -0.148 4.148 23 C -0.081 4.081 24 C -0.131 4.131 25 C -0.148 4.148 26 C -0.176 4.176 27 C -0.161 4.161 28 H 0.070 0.930 29 H 0.198 0.802 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.010 -15.920 -2.804 22.751 hybrid contribution 0.122 1.076 -0.283 1.120 sum 16.132 -14.843 -3.088 22.138 Atomic orbital electron populations 1.69700 1.05115 1.25874 1.57284 1.24676 0.95224 0.97192 1.01888 0.86600 0.79209 0.85089 0.77895 1.20990 1.20276 1.21696 1.19118 0.80650 0.94735 1.43222 0.89179 1.42702 1.03940 1.01996 1.88648 1.21375 0.88735 0.89953 0.92472 0.90043 1.24293 0.96230 1.00962 1.00140 1.21542 0.99971 0.78675 0.95960 0.88328 1.45524 1.41214 1.07427 1.40695 1.18252 0.80199 0.85476 0.81463 1.90759 1.39038 1.80229 1.31781 1.20014 1.00142 0.93482 0.99772 1.21388 0.96818 0.96520 0.95704 1.21139 0.99852 0.92985 1.00539 1.21384 0.95009 0.99836 0.95372 1.21166 0.99631 0.95657 0.98335 1.21305 0.96724 0.92330 0.97706 1.23453 0.98874 0.96649 0.94116 1.22498 0.98405 0.95531 0.98329 1.22814 0.97434 0.98583 0.98763 1.22650 0.98430 0.98727 0.96283 0.93013 0.80228 0.89554 0.91766 0.76363 0.85432 0.85296 0.85636 0.85387 0.84673 0.89098 0.91580 0.90706 0.91786 0.92036 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.25 -6.79 10.45 -15.06 -0.16 -6.94 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 9 N -0.73 -16.65 5.12 -52.99 -0.27 -16.92 16 10 C 0.19 3.40 4.26 -67.48 -0.29 3.11 16 11 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 12 C -0.17 -2.96 7.70 -25.64 -0.20 -3.16 16 13 C 0.14 2.12 4.13 -67.38 -0.28 1.84 16 14 H 0.10 1.55 7.46 -51.93 -0.39 1.16 16 15 N -0.70 -9.03 4.76 -54.22 -0.26 -9.28 16 16 C 0.56 7.85 7.77 -12.33 -0.10 7.75 16 17 O -0.54 -9.38 15.95 5.32 0.08 -9.29 16 18 C -0.13 -1.51 5.87 -104.97 -0.62 -2.13 16 19 C -0.09 -0.80 9.54 -39.19 -0.37 -1.17 16 20 C -0.13 -1.01 10.03 -39.64 -0.40 -1.40 16 21 C -0.10 -0.73 10.04 -39.49 -0.40 -1.12 16 22 C -0.13 -1.07 10.03 -39.64 -0.40 -1.46 16 23 C -0.06 -0.65 9.60 -39.19 -0.38 -1.03 16 24 C -0.13 -1.91 0.92 -154.71 -0.14 -2.06 16 25 C -0.11 -1.61 7.15 -26.28 -0.19 -1.80 16 26 C -0.14 -1.74 8.08 -25.75 -0.21 -1.95 16 27 C -0.12 -1.62 7.62 -26.28 -0.20 -1.82 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.36 8.15 4.03 -40.82 -0.16 7.98 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.40 4.38 6.45 -40.82 -0.26 4.12 16 33 H 0.13 0.99 6.41 -52.48 -0.34 0.65 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 1.44 7.65 -52.48 -0.40 1.04 16 38 H 0.09 1.50 6.99 -51.93 -0.36 1.13 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.71 7.58 -51.93 -0.39 0.32 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -32.60 351.05 -9.63 -42.23 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.13 Total: 12.32 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -4.41 Total: -13.26 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.25 Total: -54.31 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.60 -9.63 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078538457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.743 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds