Wall clock time and date at job start Fri Apr 10 2020 20:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47095 * 249.46516 * 3 2 1 5 5 C 1.36940 * 119.99603 * 264.35949 * 4 3 2 6 6 H 1.08003 * 119.99597 * 196.60515 * 5 4 3 7 7 C 1.38805 * 120.00322 * 16.59487 * 5 4 3 8 8 N 1.31616 * 119.99959 * 22.38487 * 7 5 4 9 9 Si 1.86803 * 120.00000 * 202.38061 * 7 5 4 10 10 H 1.48500 * 109.46938 * 60.00539 * 9 7 5 11 11 H 1.48508 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47319 * 300.00271 * 9 7 5 13 13 C 1.46494 * 120.00133 * 84.35592 * 4 3 2 14 14 C 1.50702 * 109.47218 * 269.99847 * 13 4 3 15 15 O 1.21351 * 119.99938 * 0.02562 * 14 13 4 16 16 C 1.46455 * 120.00377 * 179.97438 * 14 13 4 17 17 C 1.46896 * 127.05558 * 359.97438 * 16 14 13 18 18 C 1.34362 * 106.34868 * 179.75628 * 17 16 14 19 19 C 1.50701 * 125.41712 * 180.24423 * 18 17 16 20 20 N 1.36486 * 109.16666 * 0.42336 * 18 17 16 21 21 C 1.46505 * 124.77786 * 179.81591 * 20 18 17 22 22 C 1.50700 * 109.46834 * 269.70181 * 21 20 18 23 23 C 1.31006 * 119.99602 * 125.00480 * 22 21 20 24 24 C 1.34488 * 110.44489 * 359.55466 * 20 18 17 25 25 C 1.50703 * 125.92171 * 180.24013 * 24 20 18 26 26 H 4.40646 * 5.51335 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.46588 * 129.46453 * 3 2 1 28 28 H 1.08995 * 109.47215 * 9.46619 * 3 2 1 29 29 H 0.97006 * 120.00003 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47384 * 150.00141 * 13 4 3 31 31 H 1.08994 * 109.47402 * 29.99670 * 13 4 3 32 32 H 1.07995 * 126.82817 * 0.02562 * 17 16 14 33 33 H 1.08997 * 109.47316 * 270.21302 * 19 18 17 34 34 H 1.09000 * 109.47133 * 30.21138 * 19 18 17 35 35 H 1.09002 * 109.47153 * 150.20605 * 19 18 17 36 36 H 1.09001 * 109.46776 * 149.70287 * 21 20 18 37 37 H 1.09002 * 109.46675 * 29.70171 * 21 20 18 38 38 H 1.07998 * 120.00046 * 304.99477 * 22 21 20 39 39 H 1.07997 * 119.99418 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00054 * 359.97438 * 23 22 21 41 41 H 1.09004 * 109.46785 * 90.00028 * 25 24 20 42 42 H 1.09001 * 109.47040 * 210.00268 * 25 24 20 43 43 H 1.09003 * 109.46699 * 330.00179 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.4854 1.2934 5 6 3.4717 1.8036 1.4475 6 1 4.0729 2.1121 2.2900 7 6 3.0413 2.7431 0.5208 8 7 1.9884 2.4940 -0.2285 9 14 3.9566 4.3612 0.3373 10 1 5.3642 4.0923 -0.0518 11 1 3.3014 5.1844 -0.7108 12 1 3.9313 5.0935 1.6289 13 6 3.2611 -0.4400 2.4220 14 6 1.9714 -0.4617 3.2013 15 8 1.0375 0.2279 2.8483 16 6 1.8448 -1.3160 4.3842 17 6 2.8681 -2.2081 4.9454 18 6 2.3156 -2.7849 6.0259 19 6 2.9980 -3.7784 6.9305 20 7 1.0368 -2.3308 6.1716 21 6 0.1206 -2.7417 7.2384 22 6 -0.6696 -3.9428 6.7869 23 6 -0.6692 -5.0361 7.5086 24 6 0.7380 -1.4488 5.2013 25 6 -0.5760 -0.7301 5.0336 26 1 -1.0501 0.0001 -0.0002 27 1 3.0090 0.6540 -0.7934 28 1 3.0098 -1.0128 -0.1690 29 1 1.6878 3.1504 -0.8764 30 1 4.0726 -0.1118 3.0715 31 1 3.4768 -1.4410 2.0486 32 1 3.8675 -2.3655 4.5675 33 1 2.8220 -4.7881 6.5595 34 1 4.0694 -3.5789 6.9467 35 1 2.5961 -3.6868 7.9395 36 1 -0.5617 -1.9228 7.4667 37 1 0.6928 -2.9974 8.1302 38 1 -1.2363 -3.9023 5.8684 39 1 -1.2358 -5.8968 7.1852 40 1 -0.1023 -5.0767 8.4269 41 1 -0.5487 0.2101 5.5845 42 1 -0.7467 -0.5271 3.9764 43 1 -1.3828 -1.3537 5.4188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281237643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:44 Heat of formation + Delta-G solvation = 120.843422 kcal Electronic energy + Delta-G solvation = -24231.202752 eV Core-core repulsion = 20860.090955 eV Total energy + Delta-G solvation = -3371.111797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20583 -37.92442 -35.43590 -35.18533 -32.54190 -31.46558 -31.29620 -30.89124 -29.07512 -27.63665 -25.98895 -25.56829 -24.47383 -22.25468 -20.93977 -20.44919 -19.09707 -17.74768 -17.25895 -16.34088 -16.18499 -15.75697 -15.09230 -14.87205 -14.55341 -13.96064 -13.81405 -13.64684 -13.41358 -13.24918 -13.12989 -12.79058 -12.60738 -12.39065 -12.31445 -12.24495 -12.07490 -12.01773 -11.36131 -11.26031 -11.07656 -11.05884 -10.72145 -10.55917 -10.16648 -9.96571 -9.85938 -8.81358 -8.61131 -8.46133 -8.29668 -8.11494 -7.65346 -6.80603 -5.60761 -3.01476 1.68561 2.09984 2.59916 3.03706 3.48041 3.53635 3.54522 4.07669 4.38398 4.44377 4.50784 4.65012 4.75681 4.77472 4.82965 5.01726 5.07842 5.22199 5.24015 5.42645 5.43002 5.49999 5.56630 5.74461 5.79538 5.84032 5.91727 6.09493 6.12477 6.16967 6.18185 6.23626 6.37090 6.38205 6.54814 6.77056 6.93233 7.15464 7.38440 7.40858 7.46033 7.66903 7.88489 8.41525 8.92719 9.26685 9.52798 9.92419 10.37900 11.42257 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.022625 B = 0.003766 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.288623 B = 7432.839177 C = 7806.797681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.090 4.090 3 C 0.270 3.730 4 N -0.570 5.570 5 C -0.262 4.262 6 H 0.073 0.927 7 C 0.006 3.994 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.285 1.285 13 C 0.112 3.888 14 C 0.374 3.626 15 O -0.426 6.426 16 C -0.243 4.243 17 C -0.154 4.154 18 C -0.004 4.004 19 C -0.078 4.078 20 N -0.437 5.437 21 C 0.126 3.874 22 C -0.173 4.173 23 C -0.170 4.170 24 C 0.086 3.914 25 C -0.090 4.090 26 H 0.183 0.817 27 H 0.096 0.904 28 H 0.033 0.967 29 H 0.252 0.748 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -15.287 15.346 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.093 4.093 3 C 0.144 3.856 4 N -0.288 5.288 5 C -0.391 4.391 6 H 0.091 0.909 7 C -0.194 4.194 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.212 1.212 13 C -0.017 4.017 14 C 0.246 3.754 15 O -0.299 6.299 16 C -0.251 4.251 17 C -0.178 4.178 18 C -0.110 4.110 19 C -0.136 4.136 20 N -0.114 5.114 21 C 0.005 3.995 22 C -0.192 4.192 23 C -0.208 4.208 24 C -0.029 4.029 25 C -0.147 4.147 26 H 0.200 0.800 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.617 -14.871 15.258 21.467 hybrid contribution -0.134 0.942 0.197 0.972 sum -2.752 -13.929 15.455 20.987 Atomic orbital electron populations 1.23935 0.95096 1.07990 1.04479 1.24048 0.95075 0.93776 0.96408 1.17838 0.83166 0.95267 0.89289 1.44126 1.73794 1.06231 1.04651 1.19125 1.26151 0.83333 1.10445 0.90877 1.24885 0.96305 0.97446 1.00738 1.70179 1.21250 1.35096 1.25788 0.86436 0.79626 0.83785 0.77337 1.21078 1.21845 1.21181 1.21242 0.94787 0.94943 0.90691 1.23326 0.91579 0.78399 0.82047 1.90546 1.39719 1.34513 1.65077 1.21795 0.94344 1.06965 1.02033 1.21834 0.99325 1.00092 0.96506 1.20057 0.85318 1.04290 1.01383 1.20261 1.00150 0.96462 0.96696 1.43460 1.11024 1.34237 1.22712 1.20908 0.92132 0.96902 0.89576 1.23212 0.99883 0.95267 1.00841 1.23898 1.00441 0.96915 0.99502 1.20878 0.97462 0.94357 0.90204 1.20510 0.90179 0.98435 1.05622 0.79950 0.88623 0.94884 0.93757 0.90485 0.91361 0.83789 0.91492 0.90311 0.92463 0.88569 0.88963 0.86649 0.87828 0.88294 0.90919 0.88079 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.51 18.78 29.55 0.56 -6.96 16 2 C -0.09 -2.38 10.03 -37.12 -0.37 -2.75 16 3 C 0.27 6.77 5.45 -6.83 -0.04 6.73 16 4 N -0.57 -14.60 2.09 -177.96 -0.37 -14.97 16 5 C -0.26 -7.33 9.66 -15.06 -0.15 -7.48 16 6 H 0.07 2.01 7.90 -52.48 -0.41 1.59 16 7 C 0.01 0.16 4.85 -17.43 -0.08 0.08 16 8 N -0.88 -26.29 9.49 55.49 0.53 -25.76 16 9 Si 0.90 22.28 29.61 -169.99 -5.03 17.25 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 C 0.11 2.38 5.74 -5.20 -0.03 2.35 16 14 C 0.37 8.23 7.10 -31.00 -0.22 8.01 16 15 O -0.43 -11.02 12.97 5.50 0.07 -10.95 16 16 C -0.24 -4.44 6.29 -103.09 -0.65 -5.09 16 17 C -0.15 -2.31 10.58 -37.45 -0.40 -2.70 16 18 C 0.00 -0.05 6.84 -81.89 -0.56 -0.61 16 19 C -0.08 -0.68 10.05 36.01 0.36 -0.32 16 20 N -0.44 -5.68 2.66 -108.89 -0.29 -5.97 16 21 C 0.13 1.15 5.80 -5.19 -0.03 1.12 16 22 C -0.17 -1.48 9.85 -36.03 -0.35 -1.83 16 23 C -0.17 -1.13 14.32 29.01 0.42 -0.72 16 24 C 0.09 1.38 6.94 -81.44 -0.56 0.82 16 25 C -0.09 -1.35 9.28 36.01 0.33 -1.02 16 26 H 0.18 4.04 7.80 -54.09 -0.42 3.62 16 27 H 0.10 2.57 6.41 -51.93 -0.33 2.24 16 28 H 0.03 0.72 7.97 -51.93 -0.41 0.31 16 29 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 30 H 0.08 1.53 8.02 -51.93 -0.42 1.11 16 31 H 0.07 1.27 7.95 -51.93 -0.41 0.86 16 32 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.42 6.92 -51.93 -0.36 0.06 16 36 H 0.10 0.80 7.49 -51.93 -0.39 0.41 16 37 H 0.09 0.67 6.52 -51.93 -0.34 0.33 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.10 0.52 7.84 -52.49 -0.41 0.11 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.10 1.82 6.52 -51.93 -0.34 1.49 16 43 H 0.06 0.66 7.58 -51.93 -0.39 0.27 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -35.00 365.54 -7.68 -42.68 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.32 Total: 2.59 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.78 Total: -10.38 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.14 Total: -46.70 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.00 -7.68 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281237643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.523 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds