Wall clock time and date at job start Fri Apr 10 2020 20:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38328 * 120.86619 * 2 1 4 4 C 1.38355 * 119.33372 * 180.29929 * 3 2 1 5 5 N 1.31968 * 121.13679 * 359.70271 * 4 3 2 6 6 C 1.31629 * 121.90885 * 0.02562 * 5 4 3 7 7 C 1.39835 * 120.52365 * 359.97438 * 6 5 4 8 8 C 1.47207 * 120.58793 * 179.97438 * 7 6 5 9 9 C 1.34812 * 120.00167 * 315.09165 * 8 7 6 10 10 C 1.46427 * 119.99618 * 349.82687 * 9 8 7 11 11 O 1.21694 * 119.99825 * 353.26514 * 10 9 8 12 12 N 1.34770 * 119.99758 * 173.26500 * 10 9 8 13 13 C 1.46507 * 119.99996 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.01556 * 326.39272 * 13 12 10 15 15 C 1.54263 * 110.03224 * 87.83132 * 13 12 10 16 16 C 1.54892 * 104.19379 * 95.67590 * 15 13 12 17 17 C 1.54892 * 102.75104 * 37.94330 * 16 15 13 18 18 H 1.09001 * 110.48816 * 80.73095 * 17 16 15 19 19 C 1.50699 * 110.60215 * 203.32306 * 17 16 15 20 20 H 1.07995 * 119.99893 * 114.83633 * 19 17 16 21 21 C 1.37870 * 119.99737 * 294.83990 * 19 17 16 22 22 N 1.31518 * 120.00357 * 359.97438 * 21 19 17 23 23 Si 1.86806 * 119.99854 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47035 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46893 * 119.99820 * 23 21 19 26 26 H 1.48493 * 109.47301 * 240.00073 * 23 21 19 27 27 C 1.53874 * 110.03369 * 205.00185 * 13 12 10 28 28 H 1.09004 * 109.46814 * 270.24175 * 1 2 3 29 29 H 1.08998 * 109.47059 * 30.23881 * 1 2 3 30 30 H 1.09001 * 109.47265 * 150.24553 * 1 2 3 31 31 H 1.07998 * 120.33789 * 0.02636 * 3 2 1 32 32 H 1.07997 * 119.43282 * 179.72671 * 4 3 2 33 33 H 1.08003 * 119.74202 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.00548 * 135.08654 * 8 7 6 35 35 H 1.07998 * 120.00352 * 169.82904 * 9 8 7 36 36 H 0.97000 * 120.00787 * 0.27678 * 12 10 9 37 37 H 1.09004 * 110.48492 * 214.35120 * 15 13 12 38 38 H 1.08997 * 110.48636 * 336.99921 * 15 13 12 39 39 H 1.08995 * 110.76030 * 279.62802 * 16 15 13 40 40 H 1.09005 * 110.91185 * 156.32958 * 16 15 13 41 41 H 0.97000 * 119.99651 * 179.97438 * 22 21 19 42 42 H 1.08998 * 110.03111 * 359.97438 * 27 13 12 43 43 H 1.08997 * 110.03384 * 121.42886 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5997 1.1504 -0.0063 5 7 4.2517 0.0030 -0.0064 6 6 3.6239 -1.1539 -0.0011 7 6 2.2265 -1.2037 0.0054 8 6 1.5229 -2.4967 0.0108 9 6 1.9232 -3.4854 -0.8137 10 6 2.9038 -3.2094 -1.8655 11 8 3.2654 -2.0665 -2.0756 12 7 3.4059 -4.2210 -2.6009 13 6 4.3874 -3.9450 -3.6530 14 1 4.1803 -2.9784 -4.1122 15 6 5.8124 -3.9560 -3.0622 16 6 6.3257 -5.3916 -3.3354 17 6 5.7450 -5.7013 -4.7376 18 1 6.3626 -5.2504 -5.5144 19 6 5.6360 -7.1893 -4.9496 20 1 4.6653 -7.6490 -5.0621 21 6 6.7756 -7.9637 -4.9998 22 7 7.9577 -7.4038 -4.8632 23 14 6.6405 -9.8083 -5.2619 24 1 5.2100 -10.1871 -5.3864 25 1 7.3620 -10.1860 -6.5037 26 1 7.2420 -10.5181 -4.1046 27 6 4.3445 -5.0546 -4.7182 28 1 -0.3633 0.0043 1.0277 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3634 -0.8922 -0.5100 31 1 1.6965 2.1338 0.0004 32 1 4.1554 2.0764 -0.0108 33 1 4.1926 -2.0721 -0.0010 34 1 0.6861 -2.6535 0.6753 35 1 1.5207 -4.4809 -0.6984 36 1 3.1147 -5.1315 -2.4362 37 1 6.4409 -3.2233 -3.5685 38 1 5.7826 -3.7590 -1.9906 39 1 5.9365 -6.0888 -2.5936 40 1 7.4153 -5.4182 -3.3541 41 1 8.7594 -7.9488 -4.8982 42 1 3.5938 -5.7987 -4.4522 43 1 4.1174 -4.6264 -5.6945 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493636498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:18 Heat of formation + Delta-G solvation = 5.616818 kcal Electronic energy + Delta-G solvation = -23882.151402 eV Core-core repulsion = 20506.043005 eV Total energy + Delta-G solvation = -3376.108397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47487 -39.33079 -37.16741 -34.70469 -33.59923 -33.16095 -31.97964 -30.04636 -28.18193 -27.86565 -27.12402 -24.63112 -23.73962 -22.31695 -21.78420 -19.85468 -19.36862 -18.87688 -17.32701 -16.59253 -16.40705 -16.33745 -15.58389 -14.86464 -14.73459 -14.56975 -14.46900 -13.93583 -13.65877 -13.55905 -13.01936 -12.91896 -12.74972 -12.71218 -12.58920 -12.32275 -11.69941 -11.49107 -11.04007 -11.02744 -10.85117 -10.53821 -10.45028 -10.24188 -9.95600 -9.77268 -9.58495 -9.40114 -9.23346 -9.19301 -8.81503 -8.53967 -8.36574 -8.25009 -6.02258 -4.05528 0.58920 1.36422 1.74487 3.27693 3.36279 3.38740 3.44823 3.56304 3.92519 4.42108 4.44176 4.61817 4.69176 4.76745 4.84374 5.10366 5.21161 5.28873 5.29584 5.36169 5.46720 5.56917 5.66703 5.71099 5.78167 5.82675 5.95592 5.99877 6.16470 6.32954 6.34157 6.34733 6.61894 6.64602 6.75610 6.77934 6.92580 6.94146 7.25738 7.34593 7.69706 7.84644 7.87278 8.01559 8.12972 8.41882 8.50831 8.97385 9.58664 11.07166 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.030960 B = 0.003011 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.183974 B = 9295.617363 C = 9740.847808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.031 4.031 3 C -0.191 4.191 4 C 0.105 3.895 5 N -0.495 5.495 6 C 0.188 3.812 7 C -0.120 4.120 8 C -0.031 4.031 9 C -0.199 4.199 10 C 0.530 3.470 11 O -0.539 6.539 12 N -0.704 5.704 13 C 0.140 3.860 14 H 0.075 0.925 15 C -0.133 4.133 16 C -0.099 4.099 17 C 0.048 3.952 18 H 0.032 0.968 19 C -0.514 4.514 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.123 4.123 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.400 0.600 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 12.214 11.576 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.039 4.039 3 C -0.211 4.211 4 C -0.050 4.050 5 N -0.205 5.205 6 C 0.030 3.970 7 C -0.122 4.122 8 C -0.052 4.052 9 C -0.219 4.219 10 C 0.318 3.682 11 O -0.419 6.419 12 N -0.354 5.354 13 C 0.036 3.964 14 H 0.094 0.906 15 C -0.172 4.172 16 C -0.137 4.137 17 C 0.029 3.971 18 H 0.051 0.949 19 C -0.552 4.552 20 H 0.073 0.927 21 C -0.140 4.140 22 N -0.526 5.526 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.161 4.161 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.530 12.989 11.370 21.933 hybrid contribution -1.036 -1.609 -0.196 1.923 sum -14.565 11.381 11.175 21.600 Atomic orbital electron populations 1.20811 0.90602 1.03289 1.02497 1.20311 0.96126 0.92248 0.95200 1.21783 0.95609 0.98132 1.05588 1.22723 0.91606 0.96284 0.94363 1.67607 1.40886 0.98358 1.13639 1.22705 0.90173 0.95699 0.88444 1.19742 0.94848 0.93010 1.04574 1.22143 0.96013 0.91034 0.95987 1.23175 1.01143 1.00026 0.97602 1.18470 0.81540 0.85443 0.82707 1.90843 1.61100 1.20793 1.69160 1.46298 1.43206 1.09798 1.36065 1.21780 0.87895 0.99296 0.87441 0.90646 1.22814 0.95042 1.00194 0.99153 1.22451 1.00982 0.91268 0.99047 1.19469 0.89150 0.94950 0.93529 0.94945 1.21192 0.92451 0.91979 1.49570 0.92695 1.24990 0.95507 0.98315 0.95158 1.69971 0.97357 1.35240 1.50012 0.86601 0.78052 0.85976 0.77730 1.19858 1.21097 1.21103 1.22612 1.01881 0.95720 0.95864 0.90669 0.91105 0.91116 0.85323 0.83336 0.83770 0.84734 0.84699 0.76533 0.92077 0.93168 0.93533 0.91486 0.93112 0.92050 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.67 36.01 0.35 -0.53 16 2 C -0.03 -0.35 5.96 -103.84 -0.62 -0.97 16 3 C -0.19 -2.08 9.80 -39.51 -0.39 -2.47 16 4 C 0.11 1.32 11.17 -17.45 -0.19 1.13 16 5 N -0.50 -7.73 10.34 -12.83 -0.13 -7.86 16 6 C 0.19 2.83 7.79 -17.04 -0.13 2.70 16 7 C -0.12 -1.51 4.52 -104.91 -0.47 -1.99 16 8 C -0.03 -0.31 8.46 -37.16 -0.31 -0.63 16 9 C -0.20 -2.14 9.93 -37.50 -0.37 -2.52 16 10 C 0.53 7.88 6.84 -12.97 -0.09 7.79 16 11 O -0.54 -9.74 11.78 5.19 0.06 -9.68 16 12 N -0.70 -10.67 5.03 -54.11 -0.27 -10.94 16 13 C 0.14 2.52 3.25 -66.81 -0.22 2.30 16 14 H 0.08 1.43 7.56 -51.93 -0.39 1.03 16 15 C -0.13 -2.61 6.54 -25.07 -0.16 -2.77 16 16 C -0.10 -2.25 5.75 -24.74 -0.14 -2.40 16 17 C 0.05 1.14 2.71 -90.11 -0.24 0.90 16 18 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.51 -13.59 8.47 -34.44 -0.29 -13.88 16 20 H 0.05 1.43 7.54 -52.49 -0.40 1.03 16 21 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 22 N -0.89 -25.18 12.29 55.43 0.68 -24.50 16 23 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.12 -2.41 6.13 -25.61 -0.16 -2.56 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.07 0.53 7.19 -51.93 -0.37 0.15 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.14 2.23 7.10 -52.48 -0.37 1.85 16 34 H 0.14 0.89 8.03 -52.48 -0.42 0.47 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.40 5.30 8.29 -40.82 -0.34 4.96 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.95 8.04 -51.93 -0.42 0.54 16 39 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 40 H 0.07 1.68 7.55 -51.93 -0.39 1.29 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.16 7.13 -51.93 -0.37 0.79 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -31.71 352.32 -9.33 -41.04 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.41 Total: 5.11 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -3.55 Total: -14.30 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.28 Total: -43.30 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.06 Total: -9.68 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.71 -9.33 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493636498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.655 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds