Wall clock time and date at job start Fri Apr 10 2020 20:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35624 * 117.00062 * 2 1 4 4 C 1.38492 * 120.09109 * 359.97438 * 3 2 1 5 5 C 1.38059 * 120.30243 * 179.72307 * 4 3 2 6 6 C 1.39895 * 120.47565 * 0.02562 * 5 4 3 7 7 C 1.48488 * 119.91746 * 179.97438 * 6 5 4 8 8 C 1.40845 * 126.22027 * 180.02562 * 7 6 5 9 9 N 1.30681 * 108.10348 * 180.02562 * 8 7 6 10 10 N 1.40020 * 108.52439 * 359.97438 * 9 8 7 11 11 C 1.46498 * 125.89507 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47422 * 255.02831 * 11 10 9 13 13 C 1.52999 * 109.47107 * 15.03189 * 11 10 9 14 14 C 1.53005 * 109.47025 * 135.02757 * 11 10 9 15 15 C 1.34855 * 108.20401 * 359.73958 * 10 9 8 16 16 C 1.38539 * 120.16687 * 359.97048 * 6 5 4 17 17 C 1.40547 * 119.69811 * 0.04554 * 16 6 5 18 18 C 1.41168 * 120.23169 * 179.97438 * 17 16 6 19 19 H 1.07996 * 120.00130 * 154.48054 * 18 17 16 20 20 C 1.39907 * 119.99858 * 334.48462 * 18 17 16 21 21 N 1.30876 * 120.00267 * 343.09082 * 20 18 17 22 22 Si 1.86799 * 119.99890 * 163.09137 * 20 18 17 23 23 H 1.48496 * 109.47507 * 89.99599 * 22 20 18 24 24 H 1.48503 * 109.47363 * 209.99742 * 22 20 18 25 25 H 1.48499 * 109.47166 * 329.99755 * 22 20 18 26 26 H 1.09006 * 109.46394 * 299.99741 * 1 2 3 27 27 H 1.08992 * 109.47001 * 60.00077 * 1 2 3 28 28 H 1.08998 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.84632 * 359.75750 * 4 3 2 30 30 H 1.08006 * 119.76165 * 179.97438 * 5 4 3 31 31 H 1.07994 * 125.95075 * 0.02562 * 8 7 6 32 32 H 1.09005 * 109.46707 * 60.00392 * 12 11 10 33 33 H 1.09000 * 109.47543 * 179.97438 * 12 11 10 34 34 H 1.08993 * 109.47158 * 300.00322 * 12 11 10 35 35 H 1.09003 * 109.47506 * 59.99830 * 13 11 10 36 36 H 1.09005 * 109.47097 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47425 * 299.99501 * 13 11 10 38 38 H 1.09003 * 109.46837 * 59.99960 * 14 11 10 39 39 H 1.08991 * 109.47465 * 180.02562 * 14 11 10 40 40 H 1.09003 * 109.46912 * 300.00656 * 14 11 10 41 41 H 1.08002 * 126.19550 * 180.30071 * 15 10 9 42 42 H 1.08003 * 120.14958 * 180.02562 * 16 6 5 43 43 H 0.96996 * 119.99990 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2923 2.3711 -0.0005 5 6 1.9146 3.6035 0.0052 6 6 3.3106 3.6935 0.0111 7 6 3.9669 5.0254 0.0167 8 6 5.3540 5.2697 0.0224 9 7 5.5384 6.5634 0.0267 10 7 4.2869 7.1912 0.0234 11 6 4.0512 8.6371 0.0269 12 6 3.5955 9.0762 1.4198 13 6 5.3458 9.3658 -0.3394 14 6 2.9663 8.9796 -0.9962 15 6 3.3360 6.2351 0.0111 16 6 4.0824 2.5429 0.0119 17 6 3.4564 1.2846 0.0057 18 6 4.2319 0.1049 0.0058 19 1 3.8215 -0.8110 0.4044 20 6 5.5321 0.1225 -0.5104 21 7 5.9169 1.1077 -1.2812 22 14 6.7189 -1.2603 -0.0995 23 1 6.5963 -2.3362 -1.1156 24 1 8.1084 -0.7362 -0.0987 25 1 6.3955 -1.8077 1.2425 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2139 2.3134 -0.0049 30 1 1.3193 4.5047 0.0043 31 1 6.1301 4.5187 0.0231 32 1 4.3685 8.8323 2.1487 33 1 3.4206 10.1521 1.4226 34 1 2.6733 8.5572 1.6808 35 1 5.6705 9.0530 -1.3318 36 1 5.1703 10.4416 -0.3372 37 1 6.1187 9.1219 0.3894 38 1 2.0440 8.4604 -0.7352 39 1 2.7912 10.0553 -0.9939 40 1 3.2910 8.6666 -1.9886 41 1 2.2683 6.3975 0.0011 42 1 5.1601 2.6127 0.0168 43 1 6.8183 1.1197 -1.6394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243563708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:29 Heat of formation + Delta-G solvation = 49.890620 kcal Electronic energy + Delta-G solvation = -23980.867957 eV Core-core repulsion = 20606.679416 eV Total energy + Delta-G solvation = -3374.188541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80438 -38.53363 -36.82535 -35.84337 -33.62376 -30.70746 -30.29782 -29.58080 -27.75548 -27.56819 -27.09618 -26.26569 -24.93712 -22.42785 -21.24152 -20.79206 -19.26020 -18.66322 -17.37380 -16.52957 -16.36084 -15.17552 -15.06667 -14.60497 -14.50138 -14.37078 -14.22197 -13.79230 -13.49854 -12.86935 -12.77121 -12.63804 -12.46778 -12.33889 -12.17623 -11.97822 -11.87628 -11.66865 -11.44526 -11.32590 -11.18166 -11.11810 -11.00067 -10.74741 -10.40273 -10.19474 -10.07780 -9.69889 -9.34857 -9.11037 -8.89459 -8.23573 -7.40337 -6.71295 -6.36043 -4.17449 2.21017 2.74460 2.79840 2.89369 3.15195 3.18369 3.24528 3.84216 4.03745 4.42142 4.56889 4.65916 4.75894 4.78732 5.16517 5.26989 5.30229 5.45120 5.50175 5.59393 5.65699 5.68474 5.69698 5.79349 5.82589 5.87957 5.97138 6.02928 6.06860 6.09034 6.25235 6.36341 6.37825 6.48716 6.92609 7.17269 7.20283 7.35803 7.46150 7.53292 7.75606 7.82583 8.08667 8.23595 8.32340 8.46633 8.77851 8.93044 9.13813 10.30195 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.004254 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.558202 B = 6580.469288 C = 8142.187029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.011 3.989 4 C -0.177 4.177 5 C -0.202 4.202 6 C -0.022 4.022 7 C -0.155 4.155 8 C 0.061 3.939 9 N -0.306 5.306 10 N -0.372 5.372 11 C 0.184 3.816 12 C -0.159 4.159 13 C -0.141 4.141 14 C -0.159 4.159 15 C 0.041 3.959 16 C -0.132 4.132 17 C 0.099 3.901 18 C -0.447 4.447 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.798 5.798 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.261 1.261 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.164 0.836 42 H 0.128 0.872 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 12.447 1.795 13.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.227 6.227 3 C -0.033 4.033 4 C -0.196 4.196 5 C -0.222 4.222 6 C -0.024 4.024 7 C -0.166 4.166 8 C -0.125 4.125 9 N -0.126 5.126 10 N -0.156 5.156 11 C 0.100 3.900 12 C -0.217 4.217 13 C -0.199 4.199 14 C -0.218 4.218 15 C -0.104 4.104 16 C -0.152 4.152 17 C 0.096 3.904 18 C -0.477 4.477 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.424 5.424 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.185 1.185 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.200 0.800 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.181 0.819 42 H 0.145 0.855 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.194 13.443 1.660 13.917 hybrid contribution -0.492 -1.132 0.000 1.235 sum -3.686 12.311 1.660 12.958 Atomic orbital electron populations 1.22718 0.81915 1.01618 0.99845 1.85959 1.18070 1.28407 1.90233 1.19303 0.92410 0.82527 1.09084 1.20492 0.97225 0.92804 1.09056 1.20009 0.92971 0.95045 1.14174 1.17765 0.92172 0.89674 1.02766 1.19184 0.92352 0.92983 1.12083 1.24025 0.96800 0.92795 0.98927 1.77087 1.02400 1.07763 1.25367 1.48547 1.03859 1.04997 1.58177 1.20546 0.96934 0.76225 0.96251 1.22255 1.02240 1.01675 0.95514 1.21879 0.95863 0.98984 1.03174 1.22237 0.98085 1.02399 0.99036 1.22246 0.95321 0.88327 1.04459 1.21077 0.99401 0.89500 1.05178 1.16956 0.87233 0.93921 0.92270 1.19377 0.96854 0.96626 1.34819 0.90092 1.25849 0.98730 0.96828 0.92796 1.69839 1.19136 1.30693 1.22736 0.86347 0.79153 0.81282 0.80148 1.19658 1.20207 1.18543 0.94312 0.94221 0.90145 0.88688 0.89482 0.80007 0.91689 0.90870 0.91853 0.91708 0.91456 0.91074 0.91625 0.90543 0.91521 0.81852 0.85458 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.81 101.05 0.99 1.60 16 2 O -0.31 -7.31 9.77 -18.57 -0.18 -7.49 16 3 C 0.01 0.28 6.72 -38.30 -0.26 0.02 16 4 C -0.18 -3.97 9.01 -39.55 -0.36 -4.33 16 5 C -0.20 -4.45 9.56 -39.03 -0.37 -4.83 16 6 C -0.02 -0.52 5.87 -104.94 -0.62 -1.13 16 7 C -0.16 -3.19 6.04 -105.34 -0.64 -3.82 16 8 C 0.06 1.21 11.41 -17.06 -0.19 1.02 16 9 N -0.31 -5.66 11.61 30.80 0.36 -5.30 16 10 N -0.37 -5.95 3.43 -48.39 -0.17 -6.12 16 11 C 0.18 2.15 1.24 -131.82 -0.16 1.98 16 12 C -0.16 -1.58 8.73 37.16 0.32 -1.26 16 13 C -0.14 -1.53 8.08 37.16 0.30 -1.23 16 14 C -0.16 -1.54 8.28 37.16 0.31 -1.23 16 15 C 0.04 0.70 9.98 -16.87 -0.17 0.53 16 16 C -0.13 -3.38 8.20 -38.60 -0.32 -3.70 16 17 C 0.10 2.67 5.57 -106.72 -0.59 2.08 16 18 C -0.45 -12.15 8.71 -37.85 -0.33 -12.48 16 19 H 0.08 2.19 7.65 -52.49 -0.40 1.79 16 20 C 0.07 1.89 5.15 -17.33 -0.09 1.80 16 21 N -0.80 -20.61 10.97 55.55 0.61 -20.00 16 22 Si 0.91 19.11 29.59 -169.99 -5.03 14.08 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 26 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.85 6.27 -52.49 -0.33 1.53 16 30 H 0.09 1.66 6.98 -52.48 -0.37 1.30 16 31 H 0.18 3.53 7.33 -52.49 -0.38 3.15 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 38 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.16 2.40 6.73 -52.49 -0.35 2.05 16 42 H 0.13 3.32 5.16 -52.48 -0.27 3.05 16 43 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -30.19 353.29 -7.47 -37.67 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.22 Total: 6.81 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -2.17 Total: -24.97 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.80 Total: -31.42 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.18 Total: -7.49 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.19 -7.47 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243563708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.558 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds