Wall clock time and date at job start Fri Apr 10 2020 20:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35624 * 117.00062 * 2 1 4 4 C 1.38492 * 120.09109 * 359.97438 * 3 2 1 5 5 C 1.38059 * 120.30243 * 179.72307 * 4 3 2 6 6 C 1.39895 * 120.47565 * 0.02562 * 5 4 3 7 7 C 1.48488 * 119.91746 * 179.97438 * 6 5 4 8 8 C 1.40845 * 126.22027 * 180.02562 * 7 6 5 9 9 N 1.30681 * 108.10348 * 180.02562 * 8 7 6 10 10 N 1.40020 * 108.52439 * 359.97438 * 9 8 7 11 11 C 1.46498 * 125.89507 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47422 * 255.02831 * 11 10 9 13 13 C 1.52999 * 109.47107 * 15.03189 * 11 10 9 14 14 C 1.53005 * 109.47025 * 135.02757 * 11 10 9 15 15 C 1.34855 * 108.20401 * 359.73958 * 10 9 8 16 16 C 1.38539 * 120.16687 * 359.97048 * 6 5 4 17 17 C 1.40547 * 119.69811 * 0.04554 * 16 6 5 18 18 C 1.41168 * 120.23169 * 179.97438 * 17 16 6 19 19 H 1.07996 * 120.00130 * 154.48054 * 18 17 16 20 20 C 1.39907 * 119.99858 * 334.48462 * 18 17 16 21 21 N 1.30876 * 120.00267 * 343.09082 * 20 18 17 22 22 Si 1.86799 * 119.99890 * 163.09137 * 20 18 17 23 23 H 1.48496 * 109.47507 * 89.99599 * 22 20 18 24 24 H 1.48503 * 109.47363 * 209.99742 * 22 20 18 25 25 H 1.48499 * 109.47166 * 329.99755 * 22 20 18 26 26 H 1.09006 * 109.46394 * 299.99741 * 1 2 3 27 27 H 1.08992 * 109.47001 * 60.00077 * 1 2 3 28 28 H 1.08998 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.84632 * 359.75750 * 4 3 2 30 30 H 1.08006 * 119.76165 * 179.97438 * 5 4 3 31 31 H 1.07994 * 125.95075 * 0.02562 * 8 7 6 32 32 H 1.09005 * 109.46707 * 60.00392 * 12 11 10 33 33 H 1.09000 * 109.47543 * 179.97438 * 12 11 10 34 34 H 1.08993 * 109.47158 * 300.00322 * 12 11 10 35 35 H 1.09003 * 109.47506 * 59.99830 * 13 11 10 36 36 H 1.09005 * 109.47097 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47425 * 299.99501 * 13 11 10 38 38 H 1.09003 * 109.46837 * 59.99960 * 14 11 10 39 39 H 1.08991 * 109.47465 * 180.02562 * 14 11 10 40 40 H 1.09003 * 109.46912 * 300.00656 * 14 11 10 41 41 H 1.08002 * 126.19550 * 180.30071 * 15 10 9 42 42 H 1.08003 * 120.14958 * 180.02562 * 16 6 5 43 43 H 0.96996 * 119.99990 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2923 2.3711 -0.0005 5 6 1.9146 3.6035 0.0052 6 6 3.3106 3.6935 0.0111 7 6 3.9669 5.0254 0.0167 8 6 5.3540 5.2697 0.0224 9 7 5.5384 6.5634 0.0267 10 7 4.2869 7.1912 0.0234 11 6 4.0512 8.6371 0.0269 12 6 3.5955 9.0762 1.4198 13 6 5.3458 9.3658 -0.3394 14 6 2.9663 8.9796 -0.9962 15 6 3.3360 6.2351 0.0111 16 6 4.0824 2.5429 0.0119 17 6 3.4564 1.2846 0.0057 18 6 4.2319 0.1049 0.0058 19 1 3.8215 -0.8110 0.4044 20 6 5.5321 0.1225 -0.5104 21 7 5.9169 1.1077 -1.2812 22 14 6.7189 -1.2603 -0.0995 23 1 6.5963 -2.3362 -1.1156 24 1 8.1084 -0.7362 -0.0987 25 1 6.3955 -1.8077 1.2425 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2139 2.3134 -0.0049 30 1 1.3193 4.5047 0.0043 31 1 6.1301 4.5187 0.0231 32 1 4.3685 8.8323 2.1487 33 1 3.4206 10.1521 1.4226 34 1 2.6733 8.5572 1.6808 35 1 5.6705 9.0530 -1.3318 36 1 5.1703 10.4416 -0.3372 37 1 6.1187 9.1219 0.3894 38 1 2.0440 8.4604 -0.7352 39 1 2.7912 10.0553 -0.9939 40 1 3.2910 8.6666 -1.9886 41 1 2.2683 6.3975 0.0011 42 1 5.1601 2.6127 0.0168 43 1 6.8183 1.1197 -1.6394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243563708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:28 Heat of formation + Delta-G solvation = 33.488314 kcal Electronic energy + Delta-G solvation = -23981.579214 eV Core-core repulsion = 20606.679416 eV Total energy + Delta-G solvation = -3374.899798 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18637 -40.27163 -38.08341 -37.34900 -35.48437 -32.36615 -31.69589 -31.31753 -29.05533 -28.32785 -28.22713 -27.83166 -26.73005 -23.83754 -22.89768 -22.41270 -20.82673 -19.95419 -19.13033 -18.16805 -17.75586 -16.92903 -16.22883 -16.18672 -16.12697 -15.70864 -15.58505 -14.96239 -14.61636 -14.47708 -14.37987 -14.25879 -13.57192 -13.44576 -13.23478 -13.17192 -13.13311 -13.03394 -12.83861 -12.73062 -12.72314 -12.37318 -12.19987 -12.16334 -12.07629 -11.79144 -11.66985 -11.32143 -11.11807 -10.98554 -10.26212 -9.81006 -9.29787 -8.58079 -8.07880 -6.15427 0.66989 1.05357 1.16434 1.40042 1.49116 1.55241 1.61197 2.16636 2.27269 2.90795 2.99828 3.45913 3.80304 3.83782 3.91172 3.95866 4.03088 4.33945 4.48841 4.52024 4.53889 4.60744 4.62828 4.68613 4.72842 4.74969 4.78891 4.83779 4.85742 4.87410 4.93825 5.10262 5.12953 5.26566 5.28017 5.31724 5.49077 5.61665 5.70882 5.93303 5.97685 6.23315 6.29621 6.40311 6.59750 6.80245 6.90243 7.00837 7.31803 8.44126 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.004254 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.558202 B = 6580.469288 C = 8142.187029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.342 6.342 3 C -0.006 4.006 4 C -0.177 4.177 5 C -0.195 4.195 6 C -0.025 4.025 7 C -0.196 4.196 8 C 0.043 3.957 9 N -0.316 5.316 10 N -0.358 5.358 11 C 0.167 3.833 12 C -0.154 4.154 13 C -0.139 4.139 14 C -0.156 4.156 15 C 0.066 3.934 16 C -0.155 4.155 17 C 0.060 3.940 18 C -0.487 4.487 19 H 0.066 0.934 20 C 0.036 3.964 21 N -0.828 5.828 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.265 1.265 25 H -0.263 1.263 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.170 0.830 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.052 0.948 41 H 0.198 0.802 42 H 0.110 0.890 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 15.063 1.976 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.257 6.257 3 C -0.051 4.051 4 C -0.196 4.196 5 C -0.215 4.215 6 C -0.027 4.027 7 C -0.207 4.207 8 C -0.143 4.143 9 N -0.138 5.138 10 N -0.142 5.142 11 C 0.086 3.914 12 C -0.212 4.212 13 C -0.197 4.197 14 C -0.214 4.214 15 C -0.081 4.081 16 C -0.175 4.175 17 C 0.057 3.943 18 C -0.517 4.517 19 H 0.084 0.916 20 C -0.177 4.177 21 N -0.456 5.456 22 Si 0.796 3.204 23 H -0.190 1.190 24 H -0.189 1.189 25 H -0.187 1.187 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.187 0.813 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.071 0.929 41 H 0.215 0.785 42 H 0.128 0.872 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.298 16.090 1.841 17.040 hybrid contribution -0.006 -1.707 -0.054 1.708 sum -5.304 14.383 1.787 15.434 Atomic orbital electron populations 1.23072 0.78748 1.04056 1.00981 1.85901 1.21430 1.28114 1.90279 1.19495 0.92258 0.84031 1.09300 1.20866 0.98898 0.92022 1.07783 1.20474 0.92670 0.96434 1.11912 1.18034 0.93007 0.90209 1.01430 1.19157 0.92736 0.93105 1.15680 1.23920 0.96860 0.93312 1.00164 1.77045 1.04040 1.07070 1.25606 1.49084 1.02749 1.06766 1.55563 1.21170 0.98296 0.73475 0.98434 1.22254 1.01552 1.03972 0.93428 1.21899 0.94996 1.01193 1.01588 1.22265 0.97104 1.04772 0.97245 1.22603 0.96738 0.87268 1.01460 1.21033 0.98993 0.90410 1.07055 1.17358 0.88916 0.94410 0.93580 1.19476 0.98591 0.96503 1.37162 0.91563 1.26592 0.99695 0.99319 0.92108 1.69898 1.19747 1.32387 1.23523 0.85320 0.77168 0.78220 0.79676 1.18990 1.18943 1.18654 0.92818 0.93122 0.87300 0.85255 0.85631 0.81318 0.93404 0.87339 0.91605 0.93286 0.87734 0.92805 0.90927 0.87109 0.92890 0.78488 0.87233 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.81 113.37 1.11 1.98 16 2 O -0.34 -16.26 9.77 -89.36 -0.87 -17.13 16 3 C -0.01 -0.32 6.72 23.10 0.16 -0.17 16 4 C -0.18 -7.73 9.01 22.29 0.20 -7.53 16 5 C -0.20 -8.28 9.56 22.63 0.22 -8.07 16 6 C -0.03 -1.19 5.87 -20.07 -0.12 -1.31 16 7 C -0.20 -8.07 6.04 -20.33 -0.12 -8.19 16 8 C 0.04 1.77 11.41 85.50 0.98 2.74 16 9 N -0.32 -11.80 11.61 -56.46 -0.66 -12.45 16 10 N -0.36 -10.86 3.43 -307.00 -1.05 -11.91 16 11 C 0.17 3.38 1.24 3.60 0.00 3.39 16 12 C -0.15 -2.49 8.73 71.98 0.63 -1.86 16 13 C -0.14 -2.67 8.08 71.98 0.58 -2.09 16 14 C -0.16 -2.34 8.28 71.98 0.60 -1.74 16 15 C 0.07 2.14 9.98 83.81 0.84 2.97 16 16 C -0.15 -8.41 8.20 22.91 0.19 -8.22 16 17 C 0.06 3.40 5.57 -21.23 -0.12 3.28 16 18 C -0.49 -28.17 8.71 23.39 0.20 -27.97 16 19 H 0.07 3.85 7.65 -2.91 -0.02 3.83 16 20 C 0.04 1.94 5.15 85.24 0.44 2.38 16 21 N -0.83 -45.31 10.97 21.82 0.24 -45.07 16 22 Si 0.97 40.96 29.59 68.60 2.03 42.99 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 26 H 0.05 1.58 7.66 -2.38 -0.02 1.56 16 27 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 28 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.13 4.64 6.27 -2.91 -0.02 4.62 16 30 H 0.13 4.27 6.98 -2.91 -0.02 4.25 16 31 H 0.17 7.21 7.33 -2.91 -0.02 7.19 16 32 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.05 1.22 8.04 -2.39 -0.02 1.20 16 38 H 0.07 1.01 7.35 -2.39 -0.02 0.99 16 39 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.20 4.90 6.73 -2.91 -0.02 4.88 16 42 H 0.11 6.20 5.16 -2.91 -0.02 6.18 16 43 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 Total: -1.00 -70.93 353.29 6.47 -64.46 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 1.01 Total: 29.52 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 5.78 Total: -50.40 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -1.47 Total: -69.43 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.87 Total: -17.13 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -70.93 6.47 -64.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243563708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.944 kcal (2) G-P(sol) polarization free energy of solvation -70.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds