Wall clock time and date at job start Fri Apr 10 2020 20:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47465 * 2 1 4 4 N 1.46499 * 109.47068 * 240.00379 * 2 1 3 5 5 C 1.34779 * 120.00238 * 84.99752 * 4 2 1 6 6 O 1.21283 * 119.99732 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99931 * 179.97438 * 5 4 2 8 8 H 1.08996 * 112.83250 * 311.11899 * 7 5 4 9 9 C 1.53526 * 113.58424 * 180.02562 * 7 5 4 10 10 C 1.51609 * 87.24761 * 245.41144 * 9 7 5 11 11 C 1.38367 * 147.53288 * 179.97438 * 10 9 7 12 12 C 1.38099 * 120.33272 * 179.97438 * 11 10 9 13 13 C 1.38241 * 119.95080 * 0.02662 * 12 11 10 14 14 C 1.38096 * 119.95808 * 359.97438 * 13 12 11 15 15 C 1.38369 * 120.32790 * 359.97438 * 14 13 12 16 16 C 1.52999 * 109.47064 * 120.00609 * 2 1 3 17 17 C 1.53498 * 114.20262 * 299.99837 * 16 2 1 18 18 N 1.47057 * 87.98668 * 87.71732 * 17 16 2 19 19 C 1.36941 * 136.05919 * 207.08227 * 18 17 16 20 20 H 1.08004 * 119.99564 * 8.41988 * 19 18 17 21 21 C 1.38817 * 120.00159 * 188.42194 * 19 18 17 22 22 N 1.31616 * 119.99712 * 174.87812 * 21 19 18 23 23 Si 1.86800 * 119.99862 * 354.87172 * 21 19 18 24 24 H 1.48497 * 109.47128 * 174.85712 * 23 21 19 25 25 H 1.48498 * 109.47230 * 294.86344 * 23 21 19 26 26 H 1.48507 * 109.46805 * 54.86107 * 23 21 19 27 27 C 1.47068 * 87.88689 * 27.34043 * 18 17 16 28 28 H 1.09004 * 109.47219 * 59.99329 * 1 2 3 29 29 H 1.08994 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46791 * 300.00138 * 1 2 3 31 31 H 0.97004 * 119.99991 * 265.00496 * 4 2 1 32 32 H 1.08996 * 113.58916 * 0.02562 * 9 7 5 33 33 H 1.08998 * 113.58739 * 130.82361 * 9 7 5 34 34 H 1.08005 * 119.83425 * 0.02562 * 11 10 9 35 35 H 1.07999 * 120.01814 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.02200 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.83389 * 179.97438 * 14 13 12 38 38 H 1.08998 * 113.28136 * 166.93223 * 16 2 1 39 39 H 1.09001 * 113.46844 * 332.93704 * 17 16 2 40 40 H 1.09010 * 113.46568 * 202.50241 * 17 16 2 41 41 H 0.96998 * 120.00221 * 357.35404 * 22 21 19 42 42 H 1.09002 * 113.46629 * 87.43510 * 27 18 17 43 43 H 1.08999 * 113.46996 * 217.87475 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8589 1.1587 -2.4115 7 6 2.6499 -0.7284 -3.5875 8 1 3.5561 -1.3050 -3.4023 9 6 2.7395 0.1756 -4.8251 10 6 1.6554 -0.6859 -5.4426 11 6 0.8383 -0.9314 -6.5319 12 6 -0.0545 -1.9847 -6.5106 13 6 -0.1348 -2.7991 -5.3964 14 6 0.6783 -2.5585 -4.3064 15 6 1.5754 -1.5052 -4.3229 16 6 2.0400 -0.7214 1.2492 17 6 1.5898 -0.0848 2.5714 18 7 0.3768 -0.9128 2.4970 19 6 -0.9103 -0.8197 2.9554 20 1 -1.2568 0.0970 3.4093 21 6 -1.7695 -1.9035 2.8366 22 7 -2.9732 -1.8501 3.3663 23 14 -1.2174 -3.4376 1.9248 24 1 -2.2606 -4.4875 2.0455 25 1 -1.0058 -3.1122 0.4914 26 1 0.0533 -3.9324 2.5129 27 6 1.1559 -1.8881 1.7195 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2489 -1.6317 -1.1527 32 1 2.4271 1.2030 -4.6384 33 1 3.6959 0.1113 -5.3439 34 1 0.8997 -0.2966 -7.4036 35 1 -0.6896 -2.1720 -7.3638 36 1 -0.8329 -3.6229 -5.3784 37 1 0.6137 -3.1957 -3.4369 38 1 3.1031 -0.9580 1.2062 39 1 1.3911 0.9841 2.4930 40 1 2.2343 -0.3336 3.4145 41 1 -3.2462 -1.0690 3.8725 42 1 1.6860 -2.6123 2.3381 43 1 0.5876 -2.3557 0.9154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970360310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:33 Heat of formation + Delta-G solvation = 95.301243 kcal Electronic energy + Delta-G solvation = -24460.939765 eV Core-core repulsion = 21088.720377 eV Total energy + Delta-G solvation = -3372.219388 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05415 -39.67232 -38.46186 -35.39333 -34.55918 -32.40049 -31.01518 -30.03495 -28.03296 -27.66447 -25.48396 -25.44226 -23.79117 -22.32736 -21.32876 -20.71216 -19.82723 -18.81258 -17.52893 -17.28982 -16.85867 -16.04851 -15.40002 -15.30864 -15.16838 -14.89157 -14.36760 -14.04730 -13.76460 -13.26589 -13.19638 -13.15105 -12.71187 -12.51913 -12.23468 -12.05727 -11.85578 -11.69933 -11.34671 -11.21289 -11.12753 -10.80978 -10.66667 -10.56778 -10.31851 -10.10293 -9.88001 -9.22542 -9.10557 -8.97406 -8.86798 -8.82742 -8.68950 -7.10225 -6.30178 -3.22517 1.11411 1.24591 2.63219 3.22596 3.34624 3.39867 3.60862 3.62594 3.99133 4.21385 4.26294 4.57516 4.73505 4.81409 4.89957 4.93740 5.00686 5.02713 5.15867 5.39223 5.45657 5.46791 5.53369 5.68910 5.69600 5.81918 5.86382 5.94016 6.01370 6.20029 6.21528 6.23169 6.27787 6.34818 6.36682 6.46570 6.53844 6.57325 6.77090 6.81604 6.93301 7.12495 7.26528 7.64176 8.24331 8.31433 8.98011 9.50561 10.37637 11.20992 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.004426 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.067232 B = 6325.174647 C = 7340.989979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.171 3.829 3 H 0.084 0.916 4 N -0.717 5.717 5 C 0.530 3.470 6 O -0.537 6.537 7 C -0.069 4.069 8 H 0.119 0.881 9 C -0.056 4.056 10 C -0.120 4.120 11 C -0.099 4.099 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.084 4.084 15 C -0.124 4.124 16 C -0.145 4.145 17 C 0.131 3.869 18 N -0.623 5.623 19 C -0.299 4.299 20 H 0.082 0.918 21 C -0.024 4.024 22 N -0.935 5.935 23 Si 1.068 2.932 24 H -0.297 1.297 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.097 3.903 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.398 0.602 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.261 0.739 42 H 0.044 0.956 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.669 -1.062 -18.071 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.068 3.932 3 H 0.102 0.898 4 N -0.367 5.367 5 C 0.315 3.685 6 O -0.414 6.414 7 C -0.090 4.090 8 H 0.137 0.863 9 C -0.093 4.093 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.131 4.131 13 C -0.137 4.137 14 C -0.102 4.102 15 C -0.125 4.125 16 C -0.165 4.165 17 C 0.004 3.996 18 N -0.351 5.351 19 C -0.425 4.425 20 H 0.100 0.900 21 C -0.222 4.222 22 N -0.578 5.578 23 Si 0.902 3.098 24 H -0.224 1.224 25 H -0.220 1.220 26 H -0.215 1.215 27 C -0.028 4.028 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.232 0.768 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.671 -1.679 -18.481 22.470 hybrid contribution 0.541 0.787 0.735 1.205 sum 13.212 -0.892 -17.746 22.142 Atomic orbital electron populations 1.22202 0.93273 1.03260 1.02011 1.20632 0.95478 0.95707 0.81380 0.89788 1.46139 1.66666 1.13971 1.09904 1.19936 0.77719 0.87031 0.83801 1.90687 1.50083 1.15977 1.84624 1.21560 0.97579 0.96241 0.93611 0.86280 1.21799 0.96637 0.99454 0.91372 1.22217 0.97558 0.97599 0.94594 1.20282 0.95805 0.98036 0.97581 1.21026 0.98413 0.95159 0.98510 1.21012 0.99243 1.00145 0.93334 1.20388 0.94584 0.96570 0.98665 1.21698 0.97826 0.96332 0.96601 1.23250 0.98346 0.99594 0.95339 1.22291 0.88416 0.96165 0.92733 1.46046 1.05160 1.20460 1.63465 1.20082 0.83981 1.00502 1.37985 0.90006 1.25648 0.94910 1.00660 1.01019 1.70908 1.19184 1.31548 1.36130 0.83757 0.74401 0.76205 0.75478 1.22421 1.22018 1.21536 1.22859 0.92264 0.93146 0.94534 0.94599 0.92094 0.89053 0.76842 0.87270 0.88636 0.86360 0.85600 0.85429 0.86106 0.90419 0.93471 0.94204 0.92908 0.93859 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.07 37.16 0.30 -2.71 16 2 C 0.17 2.84 2.76 -67.93 -0.19 2.65 16 3 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.72 -10.00 5.08 -53.81 -0.27 -10.27 16 5 C 0.53 7.65 7.33 -10.98 -0.08 7.57 16 6 O -0.54 -9.68 15.37 5.55 0.09 -9.60 16 7 C -0.07 -0.76 4.33 -92.22 -0.40 -1.15 16 8 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.06 -0.57 7.77 -27.18 -0.21 -0.79 16 10 C -0.12 -1.39 7.49 -103.87 -0.78 -2.17 16 11 C -0.10 -1.05 10.03 -39.59 -0.40 -1.44 16 12 C -0.11 -1.13 10.04 -39.63 -0.40 -1.53 16 13 C -0.12 -1.27 10.04 -39.63 -0.40 -1.67 16 14 C -0.08 -1.00 10.03 -39.59 -0.40 -1.39 16 15 C -0.12 -1.51 6.98 -103.87 -0.72 -2.23 16 16 C -0.15 -2.34 4.24 -89.97 -0.38 -2.73 16 17 C 0.13 2.45 7.85 -8.52 -0.07 2.38 16 18 N -0.62 -14.45 2.09 -184.61 -0.39 -14.84 16 19 C -0.30 -8.31 9.94 -15.06 -0.15 -8.46 16 20 H 0.08 2.43 8.05 -52.48 -0.42 2.00 16 21 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 22 N -0.94 -29.32 13.71 55.49 0.76 -28.56 16 23 Si 1.07 26.31 24.91 -169.99 -4.23 22.08 16 24 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.29 -6.70 5.96 56.52 0.34 -6.36 16 26 H -0.29 -6.61 6.22 56.52 0.35 -6.26 16 27 C 0.10 1.92 4.68 -8.38 -0.04 1.88 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.33 5.55 -51.93 -0.29 1.04 16 30 H 0.09 2.06 5.95 -51.93 -0.31 1.75 16 31 H 0.40 4.59 8.60 -40.82 -0.35 4.24 16 32 H 0.11 1.29 7.04 -51.93 -0.37 0.92 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 40 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 42 H 0.04 0.84 7.61 -51.93 -0.40 0.45 16 43 H 0.06 1.12 3.48 -51.93 -0.18 0.94 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -33.63 341.17 -9.51 -43.14 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.20 Total: 5.48 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -4.40 Total: -12.57 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.10 Total: -53.67 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.23 Total: 22.08 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.63 -9.51 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970360310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.440 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds