Wall clock time and date at job start Fri Apr 10 2020 20:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.87780 * 2 1 4 4 C 1.54333 * 109.87927 * 238.98576 * 2 1 3 5 5 H 1.08992 * 110.71850 * 336.77608 * 4 2 1 6 6 N 1.46501 * 110.71619 * 99.87332 * 4 2 1 7 7 C 1.34776 * 119.99539 * 204.99325 * 6 4 2 8 8 O 1.21282 * 120.00239 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99796 * 180.02562 * 7 6 4 10 10 H 1.09003 * 112.82922 * 48.88640 * 9 7 6 11 11 C 1.53515 * 113.58808 * 180.02562 * 9 7 6 12 12 C 1.51603 * 87.34039 * 114.63015 * 11 9 7 13 13 C 1.38254 * 147.69946 * 179.88407 * 12 11 9 14 14 C 1.38102 * 120.40552 * 180.02562 * 13 12 11 15 15 C 1.38242 * 119.95310 * 0.07979 * 14 13 12 16 16 C 1.38095 * 119.95915 * 359.97438 * 15 14 13 17 17 C 1.38373 * 120.32423 * 359.97438 * 16 15 14 18 18 C 1.55162 * 102.94002 * 218.23567 * 4 2 1 19 19 C 1.54906 * 101.57979 * 35.50553 * 18 4 2 20 20 N 1.47022 * 110.01005 * 121.10561 * 2 1 3 21 21 C 1.36937 * 125.64342 * 298.38865 * 20 2 1 22 22 H 1.08000 * 120.00302 * 341.49656 * 21 20 2 23 23 C 1.38814 * 119.99911 * 161.49403 * 21 20 2 24 24 N 1.31614 * 120.00123 * 157.60686 * 23 21 20 25 25 Si 1.86807 * 119.99762 * 337.60717 * 23 21 20 26 26 H 1.48498 * 109.47020 * 84.54237 * 25 23 21 27 27 H 1.48495 * 109.47012 * 204.54001 * 25 23 21 28 28 H 1.48499 * 109.46930 * 324.53845 * 25 23 21 29 29 H 1.08995 * 109.47123 * 181.01077 * 1 2 3 30 30 H 1.09000 * 109.46816 * 301.01616 * 1 2 3 31 31 H 1.09003 * 109.47097 * 61.01116 * 1 2 3 32 32 H 0.97001 * 120.00065 * 25.00204 * 6 4 2 33 33 H 1.09008 * 113.59014 * 229.26304 * 11 9 7 34 34 H 1.09000 * 113.59018 * 359.97438 * 11 9 7 35 35 H 1.07998 * 119.75997 * 0.13689 * 13 12 11 36 36 H 1.07998 * 120.01816 * 180.09239 * 14 13 12 37 37 H 1.08003 * 120.02162 * 180.02562 * 15 14 13 38 38 H 1.07997 * 119.83670 * 179.97438 * 16 15 14 39 39 H 1.08996 * 111.00200 * 153.57908 * 18 4 2 40 40 H 1.08995 * 111.00151 * 277.42722 * 18 4 2 41 41 H 1.09004 * 110.36431 * 204.15633 * 19 18 4 42 42 H 1.08994 * 110.46574 * 81.87775 * 19 18 4 43 43 H 0.97008 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2439 5 1 1.3049 -1.4433 -1.6205 6 7 2.4520 0.1992 -2.2887 7 6 2.4539 -0.1845 -3.5806 8 8 2.1263 -1.3137 -3.8783 9 6 2.8630 0.7894 -4.6554 10 1 3.7992 1.2999 -4.4294 11 6 2.8110 0.1991 -6.0715 12 6 1.7021 1.1898 -6.3674 13 6 0.7983 1.6924 -7.2849 14 6 -0.0568 2.7184 -6.9337 15 6 -0.0104 3.2495 -5.6583 16 6 0.8906 2.7532 -4.7369 17 6 1.7490 1.7246 -5.0833 18 6 3.2900 -1.5102 -0.6955 19 6 2.8195 -1.8771 0.7340 20 7 2.0331 -0.7137 1.1828 21 6 1.8090 -0.3563 2.4856 22 1 1.4885 0.6473 2.7228 23 6 1.9938 -1.2842 3.5014 24 7 2.2159 -0.8763 4.7329 25 14 1.9273 -3.1118 3.1205 26 1 3.2580 -3.5667 2.6435 27 1 1.5594 -3.8604 4.3490 28 1 0.9117 -3.3610 2.0662 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3633 0.5295 0.8807 31 1 -0.3633 0.4981 -0.8989 32 1 2.7137 1.1024 -2.0506 33 1 3.7179 0.3738 -6.6505 34 1 2.4859 -0.8409 -6.0989 35 1 0.7600 1.2785 -8.2817 36 1 -0.7615 3.1052 -7.6549 37 1 -0.6789 4.0516 -5.3823 38 1 0.9255 3.1699 -3.7412 39 1 3.4887 -2.4062 -1.2835 40 1 4.1664 -0.8629 -0.6644 41 1 3.6778 -2.0299 1.3883 42 1 2.1960 -2.7709 0.7124 43 1 2.3446 -1.5248 5.4428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088829310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:33 Heat of formation + Delta-G solvation = 54.112200 kcal Electronic energy + Delta-G solvation = -24140.864848 eV Core-core repulsion = 20766.859368 eV Total energy + Delta-G solvation = -3374.005479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10091 -39.33402 -37.82877 -35.36693 -34.17680 -32.14402 -31.04419 -30.72245 -29.48076 -27.83456 -25.92775 -24.41165 -23.89626 -22.37384 -21.37589 -20.76256 -20.18933 -19.30878 -17.43343 -16.98629 -16.84598 -16.15453 -15.55738 -15.11779 -14.99486 -14.61611 -14.38367 -14.17123 -13.45398 -13.23964 -13.19644 -13.04101 -12.76759 -12.74773 -12.32332 -12.14908 -12.11187 -11.82655 -11.58060 -11.22853 -11.21225 -10.90915 -10.79459 -10.73575 -10.49139 -10.17315 -10.00642 -9.91710 -9.45209 -9.06476 -8.86873 -8.77254 -8.66937 -7.10218 -5.96478 -3.27455 1.02794 1.16372 2.55049 3.14936 3.35089 3.49141 3.51452 3.54313 3.91746 4.13361 4.20362 4.53985 4.69790 4.81062 4.85803 4.94200 4.99862 5.15375 5.21881 5.31817 5.32995 5.38309 5.45980 5.59036 5.62243 5.75851 5.83802 5.86813 5.92955 6.03446 6.14505 6.15919 6.25777 6.28915 6.38594 6.44768 6.46679 6.61015 6.71791 6.73206 6.78497 6.96063 7.56138 7.68087 8.23376 8.29476 8.80562 9.66735 10.14125 11.19438 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.003406 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.172312 B = 8218.311988 C = 8770.946854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.046 0.954 4 C 0.133 3.867 5 H 0.097 0.903 6 N -0.711 5.711 7 C 0.531 3.469 8 O -0.536 6.536 9 C -0.068 4.068 10 H 0.121 0.879 11 C -0.056 4.056 12 C -0.119 4.119 13 C -0.099 4.099 14 C -0.113 4.113 15 C -0.120 4.120 16 C -0.085 4.085 17 C -0.124 4.124 18 C -0.140 4.140 19 C 0.111 3.889 20 N -0.601 5.601 21 C -0.239 4.239 22 H 0.093 0.907 23 C 0.024 3.976 24 N -0.908 5.908 25 Si 0.881 3.119 26 H -0.285 1.285 27 H -0.303 1.303 28 H -0.276 1.276 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.401 0.599 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 7.226 -23.327 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.063 0.937 4 C 0.028 3.972 5 H 0.115 0.885 6 N -0.360 5.360 7 C 0.316 3.684 8 O -0.413 6.413 9 C -0.089 4.089 10 H 0.139 0.861 11 C -0.093 4.093 12 C -0.119 4.119 13 C -0.117 4.117 14 C -0.131 4.131 15 C -0.138 4.138 16 C -0.103 4.103 17 C -0.124 4.124 18 C -0.179 4.179 19 C -0.014 4.014 20 N -0.327 5.327 21 C -0.366 4.366 22 H 0.110 0.890 23 C -0.175 4.175 24 N -0.552 5.552 25 Si 0.711 3.289 26 H -0.212 1.212 27 H -0.230 1.230 28 H -0.202 1.202 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.235 0.765 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.060 6.404 -23.245 24.111 hybrid contribution -0.072 -0.552 0.163 0.580 sum -0.132 5.852 -23.081 23.812 Atomic orbital electron populations 1.22201 0.97206 1.01584 1.00485 1.21079 0.92866 0.95228 0.85980 0.93659 1.22161 0.97098 0.91099 0.86805 0.88475 1.45985 1.68037 1.16143 1.05871 1.19962 0.77405 0.87961 0.83089 1.90692 1.47867 1.20610 1.82153 1.21557 0.97916 0.94188 0.95281 0.86120 1.21804 0.95995 0.99490 0.92021 1.22253 0.97090 0.97625 0.94913 1.20260 0.95326 0.96987 0.99099 1.21027 0.98831 0.96548 0.96726 1.21001 0.98804 1.00489 0.93547 1.20372 0.94598 0.95463 0.99857 1.21775 0.97619 0.96594 0.96453 1.23129 0.97588 1.00131 0.97082 1.21957 0.95253 0.91143 0.93054 1.44818 1.57340 1.29068 1.01483 1.18577 1.42567 0.96824 0.78603 0.88982 1.24979 1.00060 0.97657 0.94813 1.69834 1.50700 1.33978 1.00667 0.87016 0.78282 0.87448 0.76173 1.21166 1.23047 1.20166 0.93051 0.91986 0.94082 0.76467 0.88554 0.87235 0.86352 0.85606 0.85473 0.86068 0.91245 0.90876 0.91929 0.95490 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.14 37.16 0.34 -2.49 16 2 C 0.16 2.94 3.47 -66.95 -0.23 2.71 16 3 H 0.05 0.82 7.72 -51.93 -0.40 0.42 16 4 C 0.13 2.22 2.85 -66.09 -0.19 2.04 16 5 H 0.10 1.78 7.25 -51.93 -0.38 1.40 16 6 N -0.71 -9.46 5.18 -52.02 -0.27 -9.73 16 7 C 0.53 7.25 7.37 -10.98 -0.08 7.17 16 8 O -0.54 -9.29 15.35 5.56 0.09 -9.20 16 9 C -0.07 -0.70 4.33 -92.22 -0.40 -1.10 16 10 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.06 -0.54 7.76 -27.19 -0.21 -0.75 16 12 C -0.12 -1.26 7.50 -103.83 -0.78 -2.04 16 13 C -0.10 -0.94 10.02 -39.63 -0.40 -1.33 16 14 C -0.11 -0.98 10.04 -39.63 -0.40 -1.38 16 15 C -0.12 -1.08 10.04 -39.63 -0.40 -1.48 16 16 C -0.08 -0.86 10.03 -39.58 -0.40 -1.25 16 17 C -0.12 -1.35 6.98 -103.79 -0.72 -2.07 16 18 C -0.14 -2.44 6.77 -24.58 -0.17 -2.60 16 19 C 0.11 2.42 4.70 -2.53 -0.01 2.41 16 20 N -0.60 -14.09 2.94 -162.57 -0.48 -14.57 16 21 C -0.24 -6.59 10.19 -15.06 -0.15 -6.74 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.02 0.68 5.43 -17.43 -0.09 0.58 16 24 N -0.91 -27.75 13.97 55.49 0.78 -26.98 16 25 Si 0.88 22.61 24.27 -169.99 -4.13 18.48 16 26 H -0.28 -7.04 6.49 56.52 0.37 -6.67 16 27 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 28 H -0.28 -7.04 6.66 56.52 0.38 -6.67 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.40 4.37 8.37 -40.82 -0.34 4.03 16 33 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.11 1.22 7.04 -51.93 -0.37 0.86 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.44 6.64 -51.93 -0.34 1.10 16 42 H 0.03 0.62 5.57 -51.93 -0.29 0.33 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -33.05 346.67 -9.46 -42.52 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.38 Total: 2.61 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -4.29 Total: -8.35 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.03 Total: -51.28 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.13 Total: 18.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.05 -9.46 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088829310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.629 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds