Wall clock time and date at job start Fri Apr 10 2020 20:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.87780 * 2 1 4 4 C 1.54333 * 109.87927 * 238.98576 * 2 1 3 5 5 H 1.08992 * 110.71850 * 336.77608 * 4 2 1 6 6 N 1.46501 * 110.71619 * 99.87332 * 4 2 1 7 7 C 1.34776 * 119.99539 * 204.99325 * 6 4 2 8 8 O 1.21282 * 120.00239 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99796 * 180.02562 * 7 6 4 10 10 H 1.09003 * 112.82922 * 48.88640 * 9 7 6 11 11 C 1.53515 * 113.58808 * 180.02562 * 9 7 6 12 12 C 1.51603 * 87.34039 * 114.63015 * 11 9 7 13 13 C 1.38254 * 147.69946 * 179.88407 * 12 11 9 14 14 C 1.38102 * 120.40552 * 180.02562 * 13 12 11 15 15 C 1.38242 * 119.95310 * 0.07979 * 14 13 12 16 16 C 1.38095 * 119.95915 * 359.97438 * 15 14 13 17 17 C 1.38373 * 120.32423 * 359.97438 * 16 15 14 18 18 C 1.55162 * 102.94002 * 218.23567 * 4 2 1 19 19 C 1.54906 * 101.57979 * 35.50553 * 18 4 2 20 20 N 1.47022 * 110.01005 * 121.10561 * 2 1 3 21 21 C 1.36937 * 125.64342 * 298.38865 * 20 2 1 22 22 H 1.08000 * 120.00302 * 341.49656 * 21 20 2 23 23 C 1.38814 * 119.99911 * 161.49403 * 21 20 2 24 24 N 1.31614 * 120.00123 * 157.60686 * 23 21 20 25 25 Si 1.86807 * 119.99762 * 337.60717 * 23 21 20 26 26 H 1.48498 * 109.47020 * 84.54237 * 25 23 21 27 27 H 1.48495 * 109.47012 * 204.54001 * 25 23 21 28 28 H 1.48499 * 109.46930 * 324.53845 * 25 23 21 29 29 H 1.08995 * 109.47123 * 181.01077 * 1 2 3 30 30 H 1.09000 * 109.46816 * 301.01616 * 1 2 3 31 31 H 1.09003 * 109.47097 * 61.01116 * 1 2 3 32 32 H 0.97001 * 120.00065 * 25.00204 * 6 4 2 33 33 H 1.09008 * 113.59014 * 229.26304 * 11 9 7 34 34 H 1.09000 * 113.59018 * 359.97438 * 11 9 7 35 35 H 1.07998 * 119.75997 * 0.13689 * 13 12 11 36 36 H 1.07998 * 120.01816 * 180.09239 * 14 13 12 37 37 H 1.08003 * 120.02162 * 180.02562 * 15 14 13 38 38 H 1.07997 * 119.83670 * 179.97438 * 16 15 14 39 39 H 1.08996 * 111.00200 * 153.57908 * 18 4 2 40 40 H 1.08995 * 111.00151 * 277.42722 * 18 4 2 41 41 H 1.09004 * 110.36431 * 204.15633 * 19 18 4 42 42 H 1.08994 * 110.46574 * 81.87775 * 19 18 4 43 43 H 0.97008 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2439 5 1 1.3049 -1.4433 -1.6205 6 7 2.4520 0.1992 -2.2887 7 6 2.4539 -0.1845 -3.5806 8 8 2.1263 -1.3137 -3.8783 9 6 2.8630 0.7894 -4.6554 10 1 3.7992 1.2999 -4.4294 11 6 2.8110 0.1991 -6.0715 12 6 1.7021 1.1898 -6.3674 13 6 0.7983 1.6924 -7.2849 14 6 -0.0568 2.7184 -6.9337 15 6 -0.0104 3.2495 -5.6583 16 6 0.8906 2.7532 -4.7369 17 6 1.7490 1.7246 -5.0833 18 6 3.2900 -1.5102 -0.6955 19 6 2.8195 -1.8771 0.7340 20 7 2.0331 -0.7137 1.1828 21 6 1.8090 -0.3563 2.4856 22 1 1.4885 0.6473 2.7228 23 6 1.9938 -1.2842 3.5014 24 7 2.2159 -0.8763 4.7329 25 14 1.9273 -3.1118 3.1205 26 1 3.2580 -3.5667 2.6435 27 1 1.5594 -3.8604 4.3490 28 1 0.9117 -3.3610 2.0662 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3633 0.5295 0.8807 31 1 -0.3633 0.4981 -0.8989 32 1 2.7137 1.1024 -2.0506 33 1 3.7179 0.3738 -6.6505 34 1 2.4859 -0.8409 -6.0989 35 1 0.7600 1.2785 -8.2817 36 1 -0.7615 3.1052 -7.6549 37 1 -0.6789 4.0516 -5.3823 38 1 0.9255 3.1699 -3.7412 39 1 3.4887 -2.4062 -1.2835 40 1 4.1664 -0.8629 -0.6644 41 1 3.6778 -2.0299 1.3883 42 1 2.1960 -2.7709 0.7124 43 1 2.3446 -1.5248 5.4428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088829310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:32 Heat of formation + Delta-G solvation = 33.393683 kcal Electronic energy + Delta-G solvation = -24141.763270 eV Core-core repulsion = 20766.859368 eV Total energy + Delta-G solvation = -3374.903902 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95686 -40.50753 -39.20483 -36.14875 -35.63067 -34.06364 -32.28069 -31.78044 -31.15389 -28.64639 -27.06948 -25.89815 -25.51035 -23.29920 -22.58212 -21.86544 -21.48532 -20.49777 -18.85985 -18.43040 -17.63375 -17.55370 -16.98334 -16.36285 -16.16829 -15.80643 -15.50842 -15.28215 -15.15877 -14.65517 -14.48777 -14.00338 -13.94414 -13.88794 -13.73431 -13.40167 -13.25252 -12.98436 -12.88814 -12.84723 -12.61056 -12.48803 -12.14772 -12.05103 -11.91546 -11.62880 -11.52179 -11.44666 -11.00680 -10.81935 -10.07475 -9.76996 -9.49842 -9.09608 -8.17976 -5.44262 0.32163 0.46640 1.29084 1.38401 1.45655 1.51273 2.05560 2.40461 2.82921 3.03476 3.16024 3.27803 3.43646 3.44860 3.63384 3.74327 3.87548 4.11339 4.21568 4.23089 4.27584 4.31326 4.42430 4.51407 4.66729 4.71431 4.72538 4.78003 4.82232 4.87394 4.96486 4.97166 5.03467 5.07371 5.14398 5.17893 5.33241 5.48353 5.53569 5.58987 5.68752 5.75217 6.07026 6.10919 6.51273 6.74359 7.18670 7.53212 8.08720 9.01707 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.003406 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.172312 B = 8218.311988 C = 8770.946854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 H 0.060 0.940 4 C 0.149 3.851 5 H 0.084 0.916 6 N -0.700 5.700 7 C 0.532 3.468 8 O -0.575 6.575 9 C -0.060 4.060 10 H 0.151 0.849 11 C -0.053 4.053 12 C -0.138 4.138 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.128 4.128 16 C -0.099 4.099 17 C -0.142 4.142 18 C -0.126 4.126 19 C 0.104 3.896 20 N -0.617 5.617 21 C -0.221 4.221 22 H 0.067 0.933 23 C -0.032 4.032 24 N -0.954 5.954 25 Si 0.936 3.064 26 H -0.270 1.270 27 H -0.310 1.310 28 H -0.275 1.275 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.415 0.585 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 7.956 -26.151 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.046 3.954 3 H 0.078 0.922 4 C 0.043 3.957 5 H 0.102 0.898 6 N -0.351 5.351 7 C 0.319 3.681 8 O -0.454 6.454 9 C -0.081 4.081 10 H 0.169 0.831 11 C -0.090 4.090 12 C -0.138 4.138 13 C -0.129 4.129 14 C -0.134 4.134 15 C -0.146 4.146 16 C -0.117 4.117 17 C -0.143 4.143 18 C -0.165 4.165 19 C -0.021 4.021 20 N -0.343 5.343 21 C -0.350 4.350 22 H 0.085 0.915 23 C -0.227 4.227 24 N -0.601 5.601 25 Si 0.765 3.235 26 H -0.196 1.196 27 H -0.238 1.238 28 H -0.201 1.201 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.141 0.859 34 H 0.109 0.891 35 H 0.152 0.848 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.149 0.851 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.292 7.161 -26.124 27.089 hybrid contribution -0.238 -0.657 0.943 1.174 sum 0.053 6.504 -25.182 26.008 Atomic orbital electron populations 1.22111 0.96629 1.00851 1.01190 1.21259 0.93308 0.95627 0.85249 0.92221 1.21747 0.96362 0.91065 0.86570 0.89783 1.45809 1.67794 1.16254 1.05229 1.20539 0.76226 0.87948 0.83376 1.90683 1.49465 1.22539 1.82699 1.21566 0.99034 0.93370 0.94085 0.83123 1.21818 0.96945 0.98205 0.92057 1.22508 0.97791 0.98135 0.95376 1.20583 0.95192 0.97260 0.99843 1.21394 0.98786 0.95997 0.97193 1.21343 0.98768 1.00872 0.93573 1.20639 0.94795 0.95577 1.00695 1.21906 0.98301 0.97284 0.96777 1.23041 0.98214 1.01121 0.94167 1.22010 0.94337 0.90320 0.95420 1.44898 1.58223 1.29880 1.01321 1.18518 1.40131 0.95688 0.80627 0.91504 1.25516 1.01242 1.01149 0.94794 1.69941 1.53532 1.34990 1.01680 0.86113 0.78810 0.83102 0.75452 1.19641 1.23812 1.20085 0.94399 0.93642 0.91051 0.74740 0.85920 0.89086 0.84810 0.83195 0.83468 0.85143 0.89900 0.89327 0.93461 0.96335 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.14 71.98 0.66 -4.58 16 2 C 0.15 5.49 3.47 45.34 0.16 5.65 16 3 H 0.06 2.02 7.72 -2.39 -0.02 2.00 16 4 C 0.15 4.64 2.85 46.18 0.13 4.78 16 5 H 0.08 2.93 7.25 -2.39 -0.02 2.91 16 6 N -0.70 -16.71 5.18 -436.90 -2.26 -18.98 16 7 C 0.53 13.31 7.37 87.66 0.65 13.95 16 8 O -0.57 -19.06 15.35 -3.04 -0.05 -19.10 16 9 C -0.06 -1.07 4.33 -11.83 -0.05 -1.12 16 10 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 11 C -0.05 -0.92 7.76 30.30 0.24 -0.69 16 12 C -0.14 -2.66 7.50 -19.35 -0.15 -2.81 16 13 C -0.11 -1.87 10.02 22.24 0.22 -1.65 16 14 C -0.12 -1.72 10.04 22.24 0.22 -1.49 16 15 C -0.13 -1.98 10.04 22.24 0.22 -1.76 16 16 C -0.10 -1.78 10.03 22.27 0.22 -1.55 16 17 C -0.14 -2.76 6.98 -19.32 -0.13 -2.90 16 18 C -0.13 -4.10 6.77 31.99 0.22 -3.89 16 19 C 0.10 4.41 4.70 86.85 0.41 4.82 16 20 N -0.62 -28.58 2.94 -668.26 -1.97 -30.55 16 21 C -0.22 -12.36 10.19 84.03 0.86 -11.50 16 22 H 0.07 4.01 8.06 -2.91 -0.02 3.98 16 23 C -0.03 -1.90 5.43 84.86 0.46 -1.44 16 24 N -0.95 -59.84 13.97 21.65 0.30 -59.54 16 25 Si 0.94 47.36 24.27 68.60 1.66 49.03 16 26 H -0.27 -12.90 6.49 99.48 0.65 -12.26 16 27 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 28 H -0.28 -13.71 6.66 99.48 0.66 -13.04 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.73 8.05 -2.39 -0.02 1.71 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.42 7.67 8.37 -92.71 -0.78 6.90 16 33 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.09 1.94 7.04 -2.39 -0.02 1.92 16 35 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.05 2.13 6.64 -2.38 -0.02 2.12 16 42 H 0.02 0.84 5.57 -2.39 -0.01 0.83 16 43 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -72.49 346.67 2.16 -70.33 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.13 Total: 14.98 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 4.33 Total: -6.18 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -3.92 Total: -109.06 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.66 Total: 49.03 kcal Total: -72.49 2.16 -70.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088829310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.726 kcal (2) G-P(sol) polarization free energy of solvation -72.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds