Wall clock time and date at job start Fri Apr 10 2020 20:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99442 * 2 1 4 4 C 1.53008 * 109.46791 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47191 * 59.09986 * 4 3 2 6 6 C 1.46898 * 110.99953 * 73.42308 * 5 4 3 7 7 C 1.50700 * 109.47515 * 285.20932 * 6 5 4 8 8 H 1.08008 * 119.99702 * 354.29288 * 7 6 5 9 9 C 1.37873 * 120.00547 * 174.29375 * 7 6 5 10 10 N 1.31522 * 119.99772 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00555 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47307 * 59.99707 * 11 9 7 13 13 H 1.48500 * 109.47611 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46871 * 299.99951 * 11 9 7 15 15 C 1.46894 * 111.00195 * 197.37912 * 5 4 3 16 16 C 1.50704 * 109.47301 * 171.59113 * 15 5 4 17 17 C 1.36606 * 120.92565 * 269.51558 * 16 15 5 18 18 C 1.39288 * 119.93371 * 180.02562 * 17 16 15 19 19 N 1.31111 * 121.75151 * 359.97438 * 18 17 16 20 20 C 1.33651 * 121.32250 * 0.02562 * 19 18 17 21 21 C 1.40594 * 121.08941 * 180.02562 * 20 19 18 22 22 C 1.36074 * 119.75273 * 180.02562 * 21 20 19 23 23 C 1.39368 * 121.06903 * 359.70283 * 22 21 20 24 24 C 1.36132 * 120.86854 * 0.57668 * 23 22 21 25 25 C 1.40438 * 119.61538 * 359.45432 * 24 23 22 26 26 H 1.09006 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47080 * 299.99635 * 1 2 3 28 28 H 1.08995 * 109.47940 * 59.99816 * 1 2 3 29 29 H 1.08996 * 109.47421 * 60.00428 * 3 2 1 30 30 H 1.08999 * 109.47541 * 299.99723 * 3 2 1 31 31 H 1.09004 * 109.46726 * 299.09983 * 4 3 2 32 32 H 1.09000 * 109.46874 * 179.10095 * 4 3 2 33 33 H 1.09004 * 109.47155 * 45.20709 * 6 5 4 34 34 H 1.09002 * 109.47039 * 165.20814 * 6 5 4 35 35 H 0.96994 * 120.00190 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47134 * 51.58992 * 15 5 4 37 37 H 1.09003 * 109.47252 * 291.59123 * 15 5 4 38 38 H 1.08005 * 120.03403 * 359.97438 * 17 16 15 39 39 H 1.08003 * 119.12609 * 179.97438 * 18 17 16 40 40 H 1.08006 * 120.12392 * 359.96869 * 21 20 19 41 41 H 1.07991 * 119.46570 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.56428 * 180.28829 * 23 22 21 43 43 H 1.08000 * 120.19344 * 179.72942 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9669 0.4373 -1.1893 6 6 3.8372 1.2563 -2.4019 7 6 2.3836 1.3583 -2.7862 8 1 1.6410 0.7904 -2.2454 9 6 2.0017 2.1765 -3.8282 10 7 2.9060 2.8684 -4.4864 11 14 0.1999 2.3034 -4.3041 12 1 -0.5834 2.8066 -3.1472 13 1 0.0542 3.2420 -5.4456 14 1 -0.3038 0.9629 -4.6974 15 6 5.3418 -0.0551 -1.0312 16 6 5.6767 -0.9843 -2.1694 17 6 5.4446 -2.3269 -2.0712 18 6 5.7626 -3.1669 -3.1358 19 7 6.2847 -2.7057 -4.2465 20 6 6.5368 -1.4031 -4.4072 21 6 7.0964 -0.9137 -5.6006 22 6 7.3423 0.4178 -5.7348 23 6 7.0427 1.3117 -4.7083 24 6 6.5054 0.8746 -3.5363 25 6 6.2386 -0.4932 -3.3625 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8585 0.6577 0.8971 32 1 3.9786 2.1804 -0.0168 33 1 4.2333 2.2537 -2.2109 34 1 4.3963 0.7929 -3.2148 35 1 2.6373 3.4443 -5.2192 36 1 5.4292 -0.5916 -0.0864 37 1 6.0325 0.7882 -1.0353 38 1 5.0157 -2.7367 -1.1687 39 1 5.5740 -4.2264 -3.0439 40 1 7.3311 -1.5923 -6.4074 41 1 7.7726 0.7886 -6.6533 42 1 7.2437 2.3642 -4.8427 43 1 6.2815 1.5763 -2.7464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092347708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:19 Heat of formation + Delta-G solvation = 27.992269 kcal Electronic energy + Delta-G solvation = -25090.204340 eV Core-core repulsion = 21715.066216 eV Total energy + Delta-G solvation = -3375.138125 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56375 -37.77977 -36.63516 -36.24363 -33.35258 -32.42759 -30.13824 -29.89590 -28.95505 -27.56560 -25.79759 -24.80817 -23.25180 -23.08024 -22.34917 -20.79308 -19.54012 -17.71280 -17.10633 -16.60261 -15.99746 -15.81640 -15.20903 -14.63182 -14.42625 -14.37792 -14.30963 -13.81335 -13.58474 -13.53734 -13.45059 -12.96659 -12.69306 -12.10587 -11.96381 -11.61290 -11.48981 -11.33740 -11.19651 -11.07195 -11.02997 -10.83441 -10.66507 -10.47376 -10.25252 -9.90281 -9.53468 -9.19934 -9.07611 -8.76907 -8.39388 -8.24921 -7.71988 -7.27277 -6.02796 -3.99419 0.85865 1.30232 2.46025 3.27869 3.34191 3.36711 3.39507 4.38705 4.50480 4.54392 4.69259 4.90595 5.06012 5.10251 5.24660 5.30246 5.33994 5.58980 5.60442 5.69056 5.71158 5.76806 5.82758 5.86450 5.92688 6.01303 6.05452 6.13767 6.18887 6.21080 6.34137 6.45769 6.47937 6.54946 6.80853 6.87062 6.95004 7.00223 7.21056 7.26015 7.31003 7.83486 7.91365 8.09536 8.17132 8.32591 8.53455 9.06614 9.60096 11.07162 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.006344 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.647666 B = 4412.773487 C = 5534.462753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.370 6.370 3 C 0.051 3.949 4 C 0.075 3.925 5 N -0.520 5.520 6 C 0.177 3.823 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.056 3.944 10 N -0.893 5.893 11 Si 0.887 3.113 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.087 3.913 16 C 0.004 3.996 17 C -0.166 4.166 18 C 0.128 3.872 19 N -0.486 5.486 20 C 0.126 3.874 21 C -0.107 4.107 22 C -0.097 4.097 23 C -0.119 4.119 24 C -0.068 4.068 25 C -0.088 4.088 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.039 0.961 33 H -0.006 1.006 34 H 0.046 0.954 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.022 -4.581 5.547 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.288 6.288 3 C -0.026 4.026 4 C -0.053 4.053 5 N -0.244 5.244 6 C 0.053 3.947 7 C -0.543 4.543 8 H 0.094 0.906 9 C -0.146 4.146 10 N -0.533 5.533 11 Si 0.715 3.285 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.040 4.040 16 C -0.005 4.005 17 C -0.187 4.187 18 C -0.044 4.044 19 N -0.195 5.195 20 C 0.005 3.995 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.138 4.138 24 C -0.087 4.087 25 C -0.091 4.091 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.011 0.989 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.088 -5.502 4.586 9.400 hybrid contribution -1.155 1.717 0.350 2.099 sum 4.933 -3.784 4.936 7.938 Atomic orbital electron populations 1.22585 0.83111 1.01481 0.99123 1.87924 1.17643 1.28078 1.95146 1.23022 0.93308 0.85215 1.01038 1.21887 0.94539 0.95937 0.92970 1.62165 1.17281 1.41039 1.03965 1.20208 0.98232 0.89783 0.86498 1.21346 0.92982 1.24818 1.15107 0.90569 1.24967 0.97188 0.96050 0.96375 1.69934 1.32889 1.28526 1.21922 0.86735 0.85715 0.77990 0.78060 1.20397 1.21362 1.20160 1.21038 0.91959 0.96011 0.95029 1.20022 0.92132 0.94435 0.93887 1.21625 1.02220 0.93821 1.01000 1.22794 0.93187 1.00001 0.88422 1.67950 1.13457 1.14339 1.23710 1.18776 0.97948 0.88781 0.93989 1.20635 1.00227 0.95588 0.96085 1.20822 0.99031 0.93040 0.98748 1.20802 0.99642 0.99768 0.93538 1.21062 0.95247 0.93848 0.98535 1.18722 1.00751 0.94843 0.94755 0.90695 0.95500 0.94349 0.95748 0.88342 0.92413 0.94305 0.98858 0.93651 0.93041 0.90509 0.94677 0.84827 0.82998 0.85429 0.85921 0.85895 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.00 101.05 1.11 1.67 16 2 O -0.37 -7.33 9.85 -35.23 -0.35 -7.68 16 3 C 0.05 0.97 5.28 37.16 0.20 1.17 16 4 C 0.07 1.39 5.40 -3.82 -0.02 1.37 16 5 N -0.52 -10.78 4.33 -237.51 -1.03 -11.81 16 6 C 0.18 4.35 3.41 -4.98 -0.02 4.33 16 7 C -0.50 -13.55 6.88 -34.44 -0.24 -13.79 16 8 H 0.08 2.06 5.44 -52.48 -0.29 1.77 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 11 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.09 1.53 4.90 -4.98 -0.02 1.50 16 16 C 0.00 0.07 4.92 -104.27 -0.51 -0.44 16 17 C -0.17 -2.71 9.72 -39.78 -0.39 -3.10 16 18 C 0.13 2.04 11.14 -17.47 -0.19 1.85 16 19 N -0.49 -8.90 10.34 -10.98 -0.11 -9.01 16 20 C 0.13 2.41 6.60 -84.86 -0.56 1.84 16 21 C -0.11 -1.80 9.98 -39.47 -0.39 -2.20 16 22 C -0.10 -1.52 9.94 -39.94 -0.40 -1.91 16 23 C -0.12 -2.04 9.96 -39.92 -0.40 -2.44 16 24 C -0.07 -1.29 7.22 -39.51 -0.29 -1.57 16 25 C -0.09 -1.71 4.82 -106.80 -0.51 -2.23 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 2.20 4.92 -51.93 -0.26 1.95 16 31 H 0.06 0.94 7.80 -51.93 -0.41 0.53 16 32 H 0.04 0.71 7.80 -51.93 -0.40 0.30 16 33 H -0.01 -0.16 7.55 -51.93 -0.39 -0.56 16 34 H 0.05 1.19 3.97 -51.93 -0.21 0.98 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.08 1.16 7.84 -51.93 -0.41 0.75 16 37 H 0.04 0.59 6.54 -51.93 -0.34 0.25 16 38 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.15 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 43 H 0.13 2.44 5.33 -52.49 -0.28 2.16 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -31.25 343.65 -9.24 -40.49 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.92 Total: 3.78 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.73 Total: -12.51 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.40 Total: -45.61 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.35 Total: -7.68 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.25 -9.24 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092347708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.487 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds