Wall clock time and date at job start Fri Apr 10 2020 20:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99442 * 2 1 4 4 C 1.53008 * 109.46791 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47191 * 59.09986 * 4 3 2 6 6 C 1.46898 * 110.99953 * 73.42308 * 5 4 3 7 7 C 1.50700 * 109.47515 * 285.20932 * 6 5 4 8 8 H 1.08008 * 119.99702 * 354.29288 * 7 6 5 9 9 C 1.37873 * 120.00547 * 174.29375 * 7 6 5 10 10 N 1.31522 * 119.99772 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00555 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47307 * 59.99707 * 11 9 7 13 13 H 1.48500 * 109.47611 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46871 * 299.99951 * 11 9 7 15 15 C 1.46894 * 111.00195 * 197.37912 * 5 4 3 16 16 C 1.50704 * 109.47301 * 171.59113 * 15 5 4 17 17 C 1.36606 * 120.92565 * 269.51558 * 16 15 5 18 18 C 1.39288 * 119.93371 * 180.02562 * 17 16 15 19 19 N 1.31111 * 121.75151 * 359.97438 * 18 17 16 20 20 C 1.33651 * 121.32250 * 0.02562 * 19 18 17 21 21 C 1.40594 * 121.08941 * 180.02562 * 20 19 18 22 22 C 1.36074 * 119.75273 * 180.02562 * 21 20 19 23 23 C 1.39368 * 121.06903 * 359.70283 * 22 21 20 24 24 C 1.36132 * 120.86854 * 0.57668 * 23 22 21 25 25 C 1.40438 * 119.61538 * 359.45432 * 24 23 22 26 26 H 1.09006 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47080 * 299.99635 * 1 2 3 28 28 H 1.08995 * 109.47940 * 59.99816 * 1 2 3 29 29 H 1.08996 * 109.47421 * 60.00428 * 3 2 1 30 30 H 1.08999 * 109.47541 * 299.99723 * 3 2 1 31 31 H 1.09004 * 109.46726 * 299.09983 * 4 3 2 32 32 H 1.09000 * 109.46874 * 179.10095 * 4 3 2 33 33 H 1.09004 * 109.47155 * 45.20709 * 6 5 4 34 34 H 1.09002 * 109.47039 * 165.20814 * 6 5 4 35 35 H 0.96994 * 120.00190 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47134 * 51.58992 * 15 5 4 37 37 H 1.09003 * 109.47252 * 291.59123 * 15 5 4 38 38 H 1.08005 * 120.03403 * 359.97438 * 17 16 15 39 39 H 1.08003 * 119.12609 * 179.97438 * 18 17 16 40 40 H 1.08006 * 120.12392 * 359.96869 * 21 20 19 41 41 H 1.07991 * 119.46570 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.56428 * 180.28829 * 23 22 21 43 43 H 1.08000 * 120.19344 * 179.72942 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9669 0.4373 -1.1893 6 6 3.8372 1.2563 -2.4019 7 6 2.3836 1.3583 -2.7862 8 1 1.6410 0.7904 -2.2454 9 6 2.0017 2.1765 -3.8282 10 7 2.9060 2.8684 -4.4864 11 14 0.1999 2.3034 -4.3041 12 1 -0.5834 2.8066 -3.1472 13 1 0.0542 3.2420 -5.4456 14 1 -0.3038 0.9629 -4.6974 15 6 5.3418 -0.0551 -1.0312 16 6 5.6767 -0.9843 -2.1694 17 6 5.4446 -2.3269 -2.0712 18 6 5.7626 -3.1669 -3.1358 19 7 6.2847 -2.7057 -4.2465 20 6 6.5368 -1.4031 -4.4072 21 6 7.0964 -0.9137 -5.6006 22 6 7.3423 0.4178 -5.7348 23 6 7.0427 1.3117 -4.7083 24 6 6.5054 0.8746 -3.5363 25 6 6.2386 -0.4932 -3.3625 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8585 0.6577 0.8971 32 1 3.9786 2.1804 -0.0168 33 1 4.2333 2.2537 -2.2109 34 1 4.3963 0.7929 -3.2148 35 1 2.6373 3.4443 -5.2192 36 1 5.4292 -0.5916 -0.0864 37 1 6.0325 0.7882 -1.0353 38 1 5.0157 -2.7367 -1.1687 39 1 5.5740 -4.2264 -3.0439 40 1 7.3311 -1.5923 -6.4074 41 1 7.7726 0.7886 -6.6533 42 1 7.2437 2.3642 -4.8427 43 1 6.2815 1.5763 -2.7464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092347708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:19 Heat of formation + Delta-G solvation = 8.164983 kcal Electronic energy + Delta-G solvation = -25091.064116 eV Core-core repulsion = 21715.066216 eV Total energy + Delta-G solvation = -3375.997900 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.89177 -39.30170 -37.93373 -37.71860 -34.96672 -34.24972 -31.43875 -31.25596 -30.44321 -29.38913 -27.15514 -26.36976 -24.57369 -24.53891 -24.02096 -22.25724 -21.05497 -19.04511 -18.74861 -18.18724 -17.39479 -17.25169 -16.82076 -16.45803 -15.86769 -15.85518 -15.65676 -15.18195 -15.01947 -14.95395 -14.85409 -14.42694 -14.07837 -13.91708 -13.46754 -13.19429 -13.03214 -12.82036 -12.71806 -12.59887 -12.43539 -12.41643 -12.20051 -12.10940 -11.82171 -11.49421 -11.22067 -11.00414 -10.52070 -10.41682 -10.19121 -9.60038 -9.09776 -8.91022 -8.11315 -6.13134 -0.46696 -0.01545 1.09977 1.35115 1.38302 1.44268 2.10038 2.40489 3.09005 3.16680 3.19342 3.42565 3.52935 3.68785 3.80415 3.90942 4.05954 4.27955 4.32807 4.34871 4.38560 4.47545 4.52646 4.60221 4.62001 4.64252 4.73838 4.75036 4.84455 4.88663 4.92679 5.13531 5.17317 5.21243 5.26647 5.29000 5.43282 5.49987 5.63124 5.71553 5.78304 6.01968 6.18866 6.35928 6.58535 6.67249 6.99136 7.01016 7.49430 8.97459 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.006344 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.647666 B = 4412.773487 C = 5534.462753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.054 3.946 4 C 0.072 3.928 5 N -0.528 5.528 6 C 0.197 3.803 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.006 3.994 10 N -0.924 5.924 11 Si 0.941 3.059 12 H -0.265 1.265 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.090 3.910 16 C -0.021 4.021 17 C -0.162 4.162 18 C 0.127 3.873 19 N -0.503 5.503 20 C 0.100 3.900 21 C -0.116 4.116 22 C -0.094 4.094 23 C -0.127 4.127 24 C -0.090 4.090 25 C -0.110 4.110 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.037 0.963 33 H -0.035 1.035 34 H 0.029 0.971 35 H 0.258 0.742 36 H 0.107 0.893 37 H 0.035 0.965 38 H 0.161 0.839 39 H 0.193 0.807 40 H 0.147 0.853 41 H 0.159 0.841 42 H 0.136 0.864 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 -5.938 6.484 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.308 6.308 3 C -0.023 4.023 4 C -0.056 4.056 5 N -0.253 5.253 6 C 0.072 3.928 7 C -0.546 4.546 8 H 0.091 0.909 9 C -0.192 4.192 10 N -0.565 5.565 11 Si 0.767 3.233 12 H -0.190 1.190 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.037 4.037 16 C -0.029 4.029 17 C -0.182 4.182 18 C -0.045 4.045 19 N -0.212 5.212 20 C -0.020 4.020 21 C -0.134 4.134 22 C -0.114 4.114 23 C -0.145 4.145 24 C -0.109 4.109 25 C -0.112 4.112 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.055 0.945 33 H -0.017 1.017 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.178 0.822 39 H 0.210 0.790 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.565 -6.861 5.546 10.431 hybrid contribution -0.985 2.077 0.126 2.302 sum 4.580 -4.784 5.672 8.720 Atomic orbital electron populations 1.22761 0.81529 1.02964 0.99451 1.87879 1.19474 1.28208 1.95239 1.22885 0.93719 0.85092 1.00565 1.21992 0.94305 0.96172 0.93149 1.62064 1.19558 1.40278 1.03400 1.19802 0.96450 0.88656 0.87924 1.21656 0.94186 1.24106 1.14645 0.90901 1.25670 1.00763 0.96121 0.96649 1.70057 1.34485 1.29450 1.22506 0.85866 0.81657 0.77701 0.78048 1.18995 1.21269 1.20336 1.21108 0.90123 0.96190 0.96268 1.20244 0.93142 0.95555 0.93966 1.21981 1.01102 0.93103 1.02048 1.23483 0.91613 1.01847 0.87515 1.68014 1.14361 1.13949 1.24869 1.19160 0.98804 0.89318 0.94766 1.20973 0.99922 0.96456 0.96070 1.21175 0.98212 0.92478 0.99503 1.21121 0.99029 1.00887 0.93443 1.21064 0.96798 0.93896 0.99112 1.18944 1.01541 0.95069 0.95673 0.88727 0.92926 0.96183 0.92889 0.92050 0.89331 0.94496 1.01748 0.95275 0.93292 0.87500 0.94694 0.82174 0.79041 0.83504 0.82379 0.84592 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.00 113.37 1.25 2.16 16 2 O -0.39 -14.76 9.85 -148.98 -1.47 -16.23 16 3 C 0.05 2.02 5.28 71.98 0.38 2.40 16 4 C 0.07 2.58 5.40 86.31 0.47 3.04 16 5 N -0.53 -21.77 4.33 -905.35 -3.92 -25.69 16 6 C 0.20 9.95 3.41 85.56 0.29 10.25 16 7 C -0.51 -27.80 6.88 25.60 0.18 -27.62 16 8 H 0.07 3.98 5.44 -2.91 -0.02 3.96 16 9 C 0.01 0.34 5.46 84.65 0.46 0.80 16 10 N -0.92 -54.20 13.29 21.45 0.28 -53.91 16 11 Si 0.94 44.29 29.54 68.60 2.03 46.32 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 C 0.09 3.10 4.90 85.56 0.42 3.52 16 16 C -0.02 -0.74 4.92 -19.64 -0.10 -0.84 16 17 C -0.16 -5.01 9.72 22.14 0.22 -4.79 16 18 C 0.13 3.82 11.14 85.05 0.95 4.76 16 19 N -0.50 -17.96 10.34 -188.65 -1.95 -19.91 16 20 C 0.10 3.82 6.60 40.30 0.27 4.08 16 21 C -0.12 -3.86 9.98 22.34 0.22 -3.63 16 22 C -0.09 -2.90 9.94 22.04 0.22 -2.68 16 23 C -0.13 -4.42 9.96 22.05 0.22 -4.20 16 24 C -0.09 -3.53 7.22 22.32 0.16 -3.37 16 25 C -0.11 -4.34 4.82 -21.28 -0.10 -4.44 16 26 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 2.76 4.92 -2.39 -0.01 2.75 16 31 H 0.09 2.63 7.80 -2.38 -0.02 2.61 16 32 H 0.04 1.34 7.80 -2.39 -0.02 1.32 16 33 H -0.04 -1.93 7.55 -2.39 -0.02 -1.95 16 34 H 0.03 1.59 3.97 -2.39 -0.01 1.58 16 35 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.11 2.97 7.84 -2.39 -0.02 2.95 16 37 H 0.04 1.20 6.54 -2.39 -0.02 1.18 16 38 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 41 H 0.16 3.62 8.06 -2.92 -0.02 3.60 16 42 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.11 4.66 5.33 -2.91 -0.02 4.64 16 Total: -1.00 -68.77 343.65 1.48 -67.28 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 1.01 Total: 22.71 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 5.50 Total: -20.57 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -5.58 Total: -99.51 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.47 Total: -16.23 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.77 1.48 -67.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092347708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.447 kcal (2) G-P(sol) polarization free energy of solvation -68.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds