Wall clock time and date at job start Fri Apr 10 2020 20:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46612 * 2 1 4 4 H 1.08997 * 109.47406 * 54.81963 * 3 2 1 5 5 O 1.42898 * 109.47428 * 294.81155 * 3 2 1 6 6 C 1.42899 * 113.99760 * 146.13496 * 5 3 2 7 7 C 1.50703 * 109.46702 * 174.81438 * 3 2 1 8 8 O 1.21289 * 119.99671 * 120.00216 * 7 3 2 9 9 N 1.34773 * 120.00338 * 300.00490 * 7 3 2 10 10 C 1.46500 * 120.00238 * 179.97438 * 9 7 3 11 11 C 1.52998 * 109.47565 * 179.97438 * 10 9 7 12 12 H 1.09002 * 108.44758 * 62.11959 * 11 10 9 13 13 C 1.46912 * 108.62483 * 180.02562 * 11 10 9 14 14 N 1.50117 * 106.77859 * 177.92296 * 13 11 10 15 15 C 1.36933 * 120.63867 * 111.37459 * 14 13 11 16 16 H 1.07995 * 120.00139 * 155.35483 * 15 14 13 17 17 C 1.38809 * 119.99787 * 335.34730 * 15 14 13 18 18 N 1.31615 * 120.00241 * 341.65689 * 17 15 14 19 19 Si 1.86801 * 119.99647 * 161.65935 * 17 15 14 20 20 H 1.48499 * 109.47201 * 60.00177 * 19 17 15 21 21 H 1.48506 * 109.46876 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47210 * 299.99897 * 19 17 15 23 23 C 1.43424 * 118.72128 * 291.34782 * 14 13 11 24 24 C 1.55330 * 116.24173 * 89.35580 * 23 14 13 25 25 C 1.55185 * 108.87443 * 319.46270 * 24 23 14 26 26 O 1.39647 * 110.56336 * 322.14246 * 25 24 23 27 27 H 1.08999 * 109.46783 * 305.20764 * 1 2 3 28 28 H 1.08994 * 109.47110 * 65.21064 * 1 2 3 29 29 H 1.09003 * 109.46888 * 185.21121 * 1 2 3 30 30 H 1.09004 * 109.46897 * 240.00336 * 2 1 3 31 31 H 1.08998 * 109.47308 * 119.99926 * 2 1 3 32 32 H 1.08999 * 109.47328 * 184.48523 * 6 5 3 33 33 H 1.09006 * 109.47385 * 304.48472 * 6 5 3 34 34 H 1.09006 * 109.47219 * 64.48292 * 6 5 3 35 35 H 0.96999 * 119.99674 * 359.97438 * 9 7 3 36 36 H 1.09007 * 109.47092 * 59.99893 * 10 9 7 37 37 H 1.08998 * 109.47334 * 300.00015 * 10 9 7 38 38 H 1.08998 * 109.99120 * 58.60334 * 13 11 10 39 39 H 1.09009 * 109.98779 * 297.23742 * 13 11 10 40 40 H 0.97000 * 120.00147 * 180.02562 * 18 17 15 41 41 H 1.09001 * 108.12644 * 211.11339 * 23 14 13 42 42 H 1.09004 * 108.13031 * 327.81613 * 23 14 13 43 43 H 1.09005 * 109.56596 * 79.27477 * 24 23 14 44 44 H 1.08991 * 109.57301 * 199.63891 * 24 23 14 45 45 H 1.09000 * 109.25945 * 82.41899 * 25 24 23 46 46 H 1.09003 * 109.26059 * 201.86268 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 8 1.6657 2.0801 -1.2229 6 6 1.3744 3.4725 -1.0869 7 6 3.5415 1.4445 0.1284 8 8 4.2238 1.9429 -0.7417 9 7 4.1261 0.8924 1.2100 10 6 5.5858 0.8938 1.3346 11 6 5.9867 0.2118 2.6441 12 1 5.6484 -0.8239 2.6113 13 6 7.4519 0.2241 2.7502 14 7 7.7963 -0.4061 4.0684 15 6 8.4171 -1.6256 4.1179 16 1 9.0079 -1.8961 4.9805 17 6 8.2869 -2.5141 3.0594 18 7 7.3094 -2.3644 2.1909 19 14 9.4992 -3.9223 2.8677 20 1 9.4457 -4.7891 4.0723 21 1 9.1446 -4.7206 1.6667 22 1 10.8713 -3.3765 2.7112 23 6 7.4631 0.2940 5.2750 24 6 6.0554 0.0102 5.8673 25 6 5.0295 -0.0724 4.7059 26 8 5.3273 0.8709 3.7202 27 1 -0.3633 0.5925 0.8397 28 1 -0.3633 0.4309 -0.9329 29 1 -0.3633 -1.0235 0.0933 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.0225 3.8650 -2.0410 33 1 0.6019 3.6100 -0.3303 34 1 2.2768 4.0047 -0.7857 35 1 3.5803 0.4942 1.9060 36 1 5.9495 1.9215 1.3344 37 1 6.0227 0.3537 0.4947 38 1 7.8191 1.2500 2.7203 39 1 7.8893 -0.3532 1.9355 40 1 7.2182 -2.9855 1.4515 41 1 8.2064 0.0401 6.0307 42 1 7.5352 1.3636 5.0775 43 1 6.0711 -0.9358 6.4086 44 1 5.7753 0.8162 6.5453 45 1 5.0604 -1.0706 4.2692 46 1 4.0294 0.1182 5.0954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149348708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:40 Heat of formation + Delta-G solvation = -102.146847 kcal Electronic energy + Delta-G solvation = -26251.586439 eV Core-core repulsion = 22563.496139 eV Total energy + Delta-G solvation = -3688.090300 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.96255 -38.95809 -37.35455 -35.03848 -34.55905 -33.63807 -32.11572 -31.15436 -28.88489 -27.88238 -26.35503 -25.36377 -24.86418 -22.66455 -22.01131 -20.79478 -20.05463 -19.60279 -17.53352 -17.12930 -16.88863 -15.99405 -15.67626 -15.18069 -14.85650 -14.76775 -14.46785 -14.21703 -14.11701 -13.94103 -13.73367 -13.20613 -13.03149 -12.67906 -12.49646 -12.26557 -12.09641 -11.93834 -11.63951 -11.42659 -11.29302 -11.20794 -10.90813 -10.84860 -10.75225 -10.51866 -10.50243 -10.18481 -9.98217 -9.70098 -9.53838 -9.14465 -8.82396 -8.66714 -8.51545 -6.83455 -5.93643 -3.33293 2.82372 3.30039 3.32881 3.39715 3.41513 3.79765 4.42019 4.65714 4.70721 4.77083 4.93520 5.11336 5.17969 5.22601 5.26879 5.35153 5.39243 5.59863 5.61586 5.70209 5.79275 5.80467 5.89779 5.93636 5.98748 6.11110 6.12624 6.30852 6.40488 6.46433 6.55785 6.64484 6.68597 6.79247 6.88316 6.92902 6.98138 7.10312 7.31789 7.69702 7.82182 8.10726 8.30834 8.49790 9.05482 9.73326 10.27702 11.15388 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.003992 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.789595 B = 7012.195450 C = 7540.942511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.075 3.925 4 H 0.085 0.915 5 O -0.358 6.358 6 C 0.030 3.970 7 C 0.485 3.515 8 O -0.535 6.535 9 N -0.711 5.711 10 C 0.121 3.879 11 C 0.061 3.939 12 H 0.107 0.893 13 C 0.143 3.857 14 N -0.587 5.587 15 C -0.251 4.251 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.908 5.908 19 Si 0.905 3.095 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.161 3.839 24 C -0.172 4.172 25 C 0.067 3.933 26 O -0.370 6.370 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.045 0.955 35 H 0.399 0.601 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.019 0.981 39 H 0.105 0.895 40 H 0.256 0.744 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 6.251 -0.648 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.013 3.987 4 H 0.103 0.897 5 O -0.275 6.275 6 C -0.066 4.066 7 C 0.270 3.730 8 O -0.412 6.412 9 N -0.364 5.364 10 C -0.003 4.003 11 C 0.003 3.997 12 H 0.124 0.876 13 C 0.018 3.982 14 N -0.308 5.308 15 C -0.380 4.380 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.554 5.554 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.032 3.968 24 C -0.213 4.213 25 C -0.011 4.011 26 O -0.289 6.289 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.234 0.766 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.037 0.963 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.481 6.615 -1.607 14.217 hybrid contribution 0.378 -1.043 0.586 1.255 sum -12.103 5.571 -1.021 13.363 Atomic orbital electron populations 1.21719 0.94609 1.01933 1.02236 1.21634 0.97079 0.93125 1.03891 1.22137 0.91409 0.96215 0.88931 0.89685 1.87963 1.87444 1.22282 1.29765 1.22848 0.99382 0.82139 1.02277 1.21261 0.90938 0.78703 0.82098 1.90689 1.65115 1.45261 1.40133 1.45964 1.08636 1.59481 1.22275 1.21712 0.78939 1.01070 0.98615 1.22198 0.96489 0.97536 0.83501 0.87557 1.20752 0.92016 0.94648 0.90774 1.44089 1.67647 1.19612 0.99427 1.19229 1.22578 0.91649 1.04530 0.91348 1.24904 0.97508 0.97616 0.99424 1.69837 1.29682 1.38782 1.17079 0.86324 0.81266 0.81729 0.77176 1.21026 1.21607 1.21071 1.20370 0.92327 0.94936 0.89164 1.23582 0.99725 1.00195 0.97833 1.22348 0.95669 0.93095 0.89976 1.87506 1.77077 1.34267 1.30036 0.92817 0.91969 0.92226 0.90275 0.89940 0.89469 0.94112 0.93634 0.76648 0.92148 0.90361 0.96320 0.87726 0.93369 0.94891 0.95066 0.92499 0.93205 0.91883 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.76 37.16 0.36 -0.92 16 2 C -0.12 -1.29 5.59 -26.73 -0.15 -1.44 16 3 C 0.07 0.94 2.54 -27.88 -0.07 0.87 16 4 H 0.09 0.87 7.68 -51.93 -0.40 0.47 16 5 O -0.36 -4.89 9.51 -55.14 -0.52 -5.42 16 6 C 0.03 0.32 10.87 101.05 1.10 1.42 16 7 C 0.49 7.96 7.23 -10.99 -0.08 7.88 16 8 O -0.54 -10.97 16.50 -14.36 -0.24 -11.21 16 9 N -0.71 -11.30 5.26 -60.29 -0.32 -11.62 16 10 C 0.12 2.24 5.27 -4.04 -0.02 2.21 16 11 C 0.06 1.23 2.00 -29.65 -0.06 1.17 16 12 H 0.11 2.39 5.24 -51.93 -0.27 2.12 16 13 C 0.14 3.22 4.71 -4.94 -0.02 3.19 16 14 N -0.59 -13.96 2.61 -174.50 -0.46 -14.41 16 15 C -0.25 -6.48 9.62 -15.06 -0.14 -6.62 16 16 H 0.07 1.77 7.87 -52.49 -0.41 1.35 16 17 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 18 N -0.91 -23.50 9.52 55.49 0.53 -22.97 16 19 Si 0.91 20.76 29.59 -169.99 -5.03 15.73 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.16 3.36 5.33 -4.43 -0.02 3.34 16 24 C -0.17 -3.15 6.75 -24.34 -0.16 -3.31 16 25 C 0.07 1.21 6.38 38.31 0.24 1.46 16 26 O -0.37 -7.05 9.34 -31.96 -0.30 -7.35 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 7.97 -51.93 -0.41 0.15 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.82 7.42 -51.93 -0.39 0.43 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.34 7.99 -51.93 -0.41 -0.08 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 5.57 7.55 -40.82 -0.31 5.26 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 2.59 6.02 -51.92 -0.31 2.28 16 40 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 41 H 0.03 0.68 7.96 -51.93 -0.41 0.26 16 42 H 0.03 0.64 7.98 -51.93 -0.41 0.22 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.29 6.66 -51.93 -0.35 0.94 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -29.41 362.84 -7.86 -37.27 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.88 Total: 5.27 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 0.88 Total: 9.24 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.24 Total: -49.00 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.06 Total: -23.97 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.41 -7.86 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149348708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.878 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds