Wall clock time and date at job start Fri Apr 10 2020 20:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47418 * 2 1 4 4 C 1.52998 * 109.47146 * 120.00394 * 2 1 3 5 5 C 1.53003 * 109.47240 * 185.00122 * 4 2 1 6 6 C 1.50698 * 109.47148 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00105 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99719 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00228 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47378 * 89.99850 * 10 8 6 12 12 H 1.48502 * 109.47035 * 210.00134 * 10 8 6 13 13 H 1.48501 * 109.46763 * 329.99570 * 10 8 6 14 14 N 1.46907 * 109.47326 * 240.00036 * 2 1 3 15 15 C 1.46902 * 110.99662 * 84.99989 * 14 2 1 16 16 C 1.50703 * 109.47005 * 180.02562 * 15 14 2 17 17 C 1.38797 * 120.35618 * 89.99754 * 16 15 14 18 18 C 1.38408 * 118.48465 * 179.97438 * 17 16 15 19 19 C 1.38944 * 119.10946 * 0.02562 * 18 17 16 20 20 N 1.39815 * 119.69345 * 179.97438 * 19 18 17 21 21 C 1.35842 * 126.10768 * 179.97438 * 20 19 18 22 22 C 1.35282 * 107.61411 * 179.74772 * 21 20 19 23 23 C 1.39956 * 107.96951 * 0.37186 * 22 21 20 24 24 N 1.30821 * 108.36748 * 359.62049 * 23 22 21 25 25 N 1.32308 * 120.62069 * 0.27416 * 19 18 17 26 26 C 1.31892 * 121.65026 * 359.43548 * 25 19 18 27 27 H 1.08996 * 109.47386 * 299.99672 * 1 2 3 28 28 H 1.09005 * 109.47205 * 60.00148 * 1 2 3 29 29 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46992 * 304.99806 * 4 2 1 31 31 H 1.09004 * 109.47383 * 64.99791 * 4 2 1 32 32 H 1.09005 * 109.46870 * 299.99759 * 5 4 2 33 33 H 1.08996 * 109.47361 * 59.99874 * 5 4 2 34 34 H 0.97007 * 119.99810 * 179.97438 * 9 8 6 35 35 H 1.00894 * 111.00370 * 208.95338 * 14 2 1 36 36 H 1.08998 * 109.47228 * 60.00494 * 15 14 2 37 37 H 1.09003 * 109.46945 * 300.00263 * 15 14 2 38 38 H 1.08007 * 120.75593 * 359.95812 * 17 16 15 39 39 H 1.08008 * 120.44532 * 179.97438 * 18 17 16 40 40 H 1.07997 * 126.19457 * 359.97438 * 21 20 19 41 41 H 1.07993 * 126.01832 * 180.25430 * 22 21 20 42 42 H 1.08002 * 125.81889 * 179.89275 * 23 22 21 43 43 H 1.08002 * 119.58292 * 180.29031 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3233 2.5444 7 1 3.3686 -1.8039 3.2135 8 6 5.4183 -1.3603 2.8157 9 7 6.2689 -0.7755 2.0007 10 14 6.0410 -2.2409 4.3409 11 1 6.3206 -3.6619 4.0127 12 1 7.2876 -1.5879 4.8153 13 1 5.0099 -2.1728 5.4074 14 7 2.0197 -0.6925 -1.1995 15 6 2.0825 0.2227 -2.3469 16 6 2.5874 -0.5217 -3.5561 17 6 1.6974 -1.1571 -4.4108 18 6 2.2033 -1.8290 -5.5100 19 6 3.5768 -1.8451 -5.7192 20 7 4.1010 -2.5206 -6.8253 21 6 5.4154 -2.6192 -7.1540 22 6 5.5004 -3.3565 -8.2851 23 6 4.2019 -3.7135 -8.6663 24 7 3.3645 -3.2169 -7.7925 25 7 4.3937 -1.2322 -4.8781 26 6 3.9409 -0.5793 -3.8253 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -0.2618 2.1370 31 1 1.7516 -1.7716 1.2055 32 1 3.9994 -1.0729 0.4259 33 1 3.8532 0.4369 1.3574 34 1 7.2196 -0.8012 2.1918 35 1 2.9173 -1.1205 -1.0288 36 1 2.7589 1.0462 -2.1182 37 1 1.0870 0.6164 -2.5525 38 1 0.6343 -1.1281 -4.2223 39 1 1.5393 -2.3347 -6.1956 40 1 6.2431 -2.1902 -6.6088 41 1 6.4099 -3.6212 -8.8038 42 1 3.9368 -4.3026 -9.5318 43 1 4.6376 -0.0869 -3.1630 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:53 Heat of formation + Delta-G solvation = 108.051037 kcal Electronic energy + Delta-G solvation = -22975.157488 eV Core-core repulsion = 19635.783723 eV Total energy + Delta-G solvation = -3339.373765 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.165 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68614 -40.14729 -37.32949 -34.45094 -33.12097 -32.66964 -31.66886 -30.39567 -29.61111 -28.72877 -25.68048 -24.80063 -24.07756 -22.61474 -21.41722 -21.03107 -20.86795 -19.60455 -18.56150 -16.79866 -16.38800 -15.69667 -15.59745 -15.40946 -15.24094 -14.72035 -14.52186 -14.30639 -13.77258 -13.62028 -13.30737 -13.12820 -12.91548 -12.60784 -12.45528 -12.35250 -12.11285 -11.55743 -11.47398 -11.16149 -11.04941 -10.94141 -10.53544 -10.51402 -10.29984 -9.98350 -9.83881 -9.73000 -9.35125 -9.31557 -9.07586 -8.40931 -8.37056 -8.07465 -6.04166 -4.06075 0.53920 1.08935 1.92235 1.97234 2.55466 3.30073 3.36525 3.39639 3.63439 4.12353 4.37225 4.43337 4.52233 4.69458 4.77734 4.86635 4.87973 5.06226 5.23392 5.32004 5.40839 5.45686 5.53142 5.62425 5.67044 5.71508 5.75079 5.83177 5.85568 6.11488 6.13770 6.28652 6.32541 6.37392 6.45788 6.47640 6.84959 6.91419 7.02519 7.20301 7.37571 7.56115 7.73200 7.76898 7.79699 7.94926 8.38576 9.00297 9.58437 11.07015 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003035 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.975718 B = 9223.530170 C =10779.496296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.683 5.683 15 C 0.102 3.898 16 C -0.136 4.136 17 C -0.033 4.033 18 C -0.165 4.165 19 C 0.358 3.642 20 N -0.323 5.323 21 C 0.082 3.918 22 C -0.271 4.271 23 C 0.060 3.940 24 N -0.287 5.287 25 N -0.504 5.504 26 C 0.143 3.857 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.354 0.646 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.183 0.817 41 H 0.155 0.845 42 H 0.192 0.808 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 -0.105 -19.051 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.058 0.942 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.318 5.318 15 C -0.028 4.028 16 C -0.139 4.139 17 C -0.060 4.060 18 C -0.188 4.188 19 C 0.131 3.869 20 N -0.100 5.100 21 C -0.060 4.060 22 C -0.299 4.299 23 C -0.128 4.128 24 N -0.106 5.106 25 N -0.216 5.216 26 C -0.015 4.015 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.176 0.824 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.200 0.800 41 H 0.173 0.827 42 H 0.208 0.792 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.626 -0.190 -18.971 20.448 hybrid contribution 1.401 -0.084 0.931 1.684 sum -6.225 -0.273 -18.041 19.087 Atomic orbital electron populations 1.21797 0.95662 1.01768 1.00243 1.21630 0.94556 0.96176 0.90324 0.94189 1.21843 0.99723 0.99495 0.94271 1.19123 0.88718 0.96859 0.96916 1.21225 0.91951 1.34300 1.08331 0.92688 1.25016 0.97091 0.95574 0.96717 1.69949 1.02380 1.44050 1.37077 0.86606 0.78312 0.79806 0.83368 1.20645 1.21240 1.19893 1.60683 1.34980 1.32068 1.04077 1.20811 1.00605 0.93187 0.88157 1.20913 0.94342 1.00602 0.98012 1.21400 1.00833 0.92353 0.91367 1.21566 0.93767 1.03053 1.00366 1.17705 0.89189 0.93444 0.86529 1.45803 1.05068 1.40140 1.19019 1.22975 0.87423 0.98653 0.96960 1.21649 0.98839 1.08898 1.00554 1.24127 0.91609 0.98666 0.98442 1.77428 1.19676 1.13257 1.00270 1.66863 1.39323 1.10564 1.04849 1.22539 0.93879 0.93452 0.91671 0.92918 0.93786 0.92349 0.92597 0.92443 0.96743 0.96915 0.93008 0.82395 0.93782 0.90219 0.83754 0.83673 0.80007 0.82721 0.79156 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.41 37.16 0.35 -1.50 16 2 C 0.08 1.32 2.65 -67.71 -0.18 1.14 16 3 H 0.04 0.66 7.80 -51.93 -0.40 0.25 16 4 C -0.12 -2.28 4.74 -26.73 -0.13 -2.41 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 7 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 N -0.68 -10.52 6.30 -107.99 -0.68 -11.20 16 15 C 0.10 1.28 5.63 -4.97 -0.03 1.26 16 16 C -0.14 -1.69 5.41 -104.45 -0.57 -2.26 16 17 C -0.03 -0.38 9.85 -39.31 -0.39 -0.77 16 18 C -0.17 -2.06 9.70 -39.26 -0.38 -2.44 16 19 C 0.36 5.06 7.55 -154.37 -1.17 3.89 16 20 N -0.32 -4.38 3.81 -12.11 -0.05 -4.42 16 21 C 0.08 0.95 11.10 -16.83 -0.19 0.76 16 22 C -0.27 -2.56 10.80 -39.99 -0.43 -2.99 16 23 C 0.06 0.58 12.02 -17.34 -0.21 0.37 16 24 N -0.29 -3.66 11.84 30.64 0.36 -3.30 16 25 N -0.50 -7.28 9.86 -12.29 -0.12 -7.40 16 26 C 0.14 1.92 10.85 -17.57 -0.19 1.73 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.01 0.37 6.43 -51.93 -0.33 0.03 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 35 H 0.35 6.25 6.46 -39.29 -0.25 6.00 16 36 H 0.04 0.56 8.01 -51.93 -0.42 0.14 16 37 H 0.08 0.89 7.39 -51.93 -0.38 0.50 16 38 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 39 H 0.15 1.66 7.69 -52.48 -0.40 1.26 16 40 H 0.18 1.84 8.05 -52.49 -0.42 1.42 16 41 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.19 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 363.31 15.07 5.47 5.47 Total: -1.00 -31.63 363.31 -9.69 -41.32 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.35 Total: 4.68 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -4.05 Total: -16.07 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.25 Total: -51.94 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.63 -9.69 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.374 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds