Wall clock time and date at job start Fri Apr 10 2020 20:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54283 * 112.38368 * 2 1 4 4 N 1.48522 * 104.71477 * 260.85088 * 3 2 1 5 5 C 1.48515 * 104.20297 * 320.26673 * 4 3 2 6 6 C 1.54291 * 104.71583 * 39.72931 * 5 4 3 7 7 C 1.53005 * 112.37976 * 98.55350 * 6 5 4 8 8 C 1.54284 * 108.81999 * 224.27227 * 6 5 4 9 9 N 1.48518 * 104.71680 * 135.72792 * 8 6 5 10 10 C 1.46898 * 111.00049 * 200.72384 * 9 8 6 11 11 C 1.50702 * 109.46897 * 285.39354 * 10 9 8 12 12 C 1.38630 * 119.74953 * 269.72982 * 11 10 9 13 13 C 1.37623 * 120.24474 * 179.71985 * 12 11 10 14 14 C 1.40717 * 119.74505 * 0.57403 * 13 12 11 15 15 C 1.41395 * 120.24320 * 179.67876 * 14 13 12 16 16 H 1.07997 * 120.00261 * 24.40061 * 15 14 13 17 17 C 1.39955 * 119.99968 * 204.39997 * 15 14 13 18 18 N 1.30816 * 119.99751 * 17.84901 * 17 15 14 19 19 Si 1.86797 * 119.99894 * 197.85109 * 17 15 14 20 20 H 1.48495 * 109.47189 * 59.99726 * 19 17 15 21 21 H 1.48497 * 109.46861 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46994 * 299.99676 * 19 17 15 23 23 C 1.40717 * 119.51096 * 359.69976 * 14 13 12 24 24 C 1.37611 * 119.74613 * 0.02562 * 23 14 13 25 25 C 1.48520 * 104.20026 * 320.27314 * 9 8 6 26 26 H 1.09002 * 109.46630 * 297.86946 * 1 2 3 27 27 H 1.09000 * 109.46541 * 57.86217 * 1 2 3 28 28 H 1.08992 * 109.47486 * 177.86501 * 1 2 3 29 29 H 1.08998 * 110.38827 * 19.65540 * 3 2 1 30 30 H 1.08998 * 110.38933 * 141.92968 * 3 2 1 31 31 H 1.00898 * 110.99639 * 200.72850 * 4 3 2 32 32 H 1.09001 * 110.39114 * 158.53482 * 5 4 3 33 33 H 1.08997 * 110.39488 * 280.80917 * 5 4 3 34 34 H 1.09006 * 109.46977 * 301.91322 * 7 6 5 35 35 H 1.08995 * 109.47320 * 61.90800 * 7 6 5 36 36 H 1.09001 * 109.46990 * 181.91230 * 7 6 5 37 37 H 1.08992 * 110.39090 * 16.91376 * 8 6 5 38 38 H 1.09004 * 110.38760 * 254.53688 * 8 6 5 39 39 H 1.08998 * 109.46759 * 45.39450 * 10 9 8 40 40 H 1.09000 * 109.46839 * 165.40101 * 10 9 8 41 41 H 1.08001 * 119.88000 * 359.97438 * 12 11 10 42 42 H 1.08003 * 120.12615 * 180.27580 * 13 12 11 43 43 H 0.97004 * 120.00349 * 180.02562 * 18 17 15 44 44 H 1.07998 * 120.12499 * 180.02562 * 23 14 13 45 45 H 1.07998 * 119.87886 * 180.02562 * 24 23 14 46 46 H 1.08997 * 110.38513 * 158.54353 * 25 9 8 47 47 H 1.09002 * 110.38252 * 280.80040 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1175 1.4266 0.0000 4 7 2.4724 1.6884 -1.4182 5 6 3.0331 0.3994 -1.8975 6 6 2.1365 -0.6804 -1.2568 7 6 1.0642 -1.1938 -2.2199 8 6 3.0330 -1.8073 -0.7029 9 7 2.4722 -2.1107 0.6384 10 6 3.4655 -2.7867 1.4837 11 6 3.6181 -4.2168 1.0334 12 6 2.8192 -5.2027 1.5915 13 6 2.9461 -6.5110 1.1838 14 6 3.8995 -6.8480 0.2053 15 6 4.0434 -8.1899 -0.2165 16 1 3.2177 -8.8789 -0.1168 17 6 5.2560 -8.6254 -0.7631 18 7 6.3467 -7.9285 -0.5734 19 14 5.3168 -10.2016 -1.7637 20 1 4.4176 -10.0769 -2.9389 21 1 6.7071 -10.4399 -2.2279 22 1 4.8739 -11.3408 -0.9202 23 6 4.7089 -5.8398 -0.3501 24 6 4.5608 -4.5373 0.0687 25 6 2.1174 -0.7801 1.1945 26 1 -0.3633 0.4804 0.9085 27 1 -0.3632 0.5467 -0.8702 28 1 -0.3634 -1.0269 -0.0383 29 1 1.3724 2.1441 0.3437 30 1 3.0059 1.4714 0.6300 31 1 3.1547 2.4283 -1.4895 32 1 2.9784 0.3423 -2.9847 33 1 4.0645 0.2862 -1.5634 34 1 0.4471 -0.3599 -2.5545 35 1 1.5425 -1.6603 -3.0810 36 1 0.4389 -1.9269 -1.7101 37 1 4.0637 -1.4640 -0.6148 38 1 2.9783 -2.6864 -1.3451 39 1 4.4239 -2.2746 1.3984 40 1 3.1334 -2.7662 2.5217 41 1 2.0917 -4.9426 2.3461 42 1 2.3195 -7.2769 1.6167 43 1 7.1871 -8.2301 -0.9526 44 1 5.4436 -6.0873 -1.1020 45 1 5.1806 -3.7618 -0.3564 46 1 1.3724 -0.8846 1.9832 47 1 3.0066 -0.2791 1.5772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702580607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:15 Heat of formation + Delta-G solvation = 23.649247 kcal Electronic energy + Delta-G solvation = -24861.195502 eV Core-core repulsion = 21621.702145 eV Total energy + Delta-G solvation = -3239.493358 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.65762 -37.70719 -35.83444 -33.75691 -32.43912 -32.12760 -30.16625 -29.24869 -27.41855 -25.90974 -25.85253 -25.56080 -23.66308 -21.39100 -21.03184 -20.70459 -19.66522 -18.10317 -17.26590 -16.20689 -15.77886 -15.29412 -14.80336 -14.55456 -14.42959 -14.05628 -13.76988 -13.72761 -13.56827 -13.02640 -12.81924 -12.64520 -12.41343 -12.28437 -12.01041 -11.91556 -11.59029 -11.50457 -11.36623 -11.17314 -11.10606 -10.94506 -10.71275 -10.51878 -10.51753 -10.39954 -10.37790 -10.25239 -9.54616 -9.35322 -9.09887 -8.78684 -8.06536 -7.40917 -7.26218 -6.74481 -4.32352 2.77153 3.06741 3.09483 3.12007 3.20899 3.94154 4.10366 4.23666 4.38064 4.60709 4.70435 4.88088 5.01006 5.14878 5.17527 5.24540 5.47855 5.57482 5.61903 5.65062 5.72009 5.73858 5.77432 5.82359 5.88725 5.90418 6.00151 6.06178 6.11361 6.21906 6.23875 6.28325 6.34327 6.40608 6.42770 6.52206 6.60221 6.96215 7.09188 7.10743 7.16025 7.33450 7.40426 7.43716 7.64780 7.91618 8.08153 8.17223 8.33383 8.66667 8.92339 9.00961 10.20098 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.025242 B = 0.003320 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.004040 B = 8432.240326 C = 8757.142205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 C 0.042 3.958 4 N -0.664 5.664 5 C 0.041 3.959 6 C -0.058 4.058 7 C -0.122 4.122 8 C 0.048 3.952 9 N -0.496 5.496 10 C 0.109 3.891 11 C -0.204 4.204 12 C -0.070 4.070 13 C -0.228 4.228 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.795 5.795 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.166 4.166 24 C -0.093 4.093 25 C 0.036 3.964 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.332 0.668 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.024 0.976 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.280 0.720 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 15.433 -0.985 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.059 4.059 3 C -0.087 4.087 4 N -0.291 5.291 5 C -0.088 4.088 6 C -0.059 4.059 7 C -0.179 4.179 8 C -0.080 4.080 9 N -0.220 5.220 10 C -0.017 4.017 11 C -0.206 4.206 12 C -0.089 4.089 13 C -0.248 4.248 14 C 0.110 3.890 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.420 5.420 19 Si 0.731 3.269 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.185 4.185 24 C -0.112 4.112 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.276 15.016 -1.336 16.330 hybrid contribution 2.001 -0.244 0.186 2.025 sum -4.275 14.773 -1.151 15.422 Atomic orbital electron populations 1.21618 0.92708 1.02364 1.01187 1.21949 0.96396 0.93113 0.94469 1.23116 0.99163 0.96814 0.89627 1.63698 1.42672 1.06125 1.16627 1.23136 0.95829 0.89254 1.00593 1.21978 0.95248 0.94056 0.94657 1.21621 0.97744 1.00711 0.97854 1.23234 0.94841 0.97781 0.92154 1.65524 1.38381 1.15936 1.02111 1.20892 0.91787 0.93320 0.95730 1.18781 1.03679 0.92325 1.05801 1.20304 0.97115 0.93030 0.98415 1.20957 1.05820 0.95030 1.02956 1.17601 0.89810 0.93127 0.88432 1.19569 0.98071 0.95860 1.35907 0.90555 1.25896 0.95017 0.98685 0.94465 1.69821 0.99575 1.37949 1.34657 0.86397 0.78013 0.81719 0.80764 1.18825 1.20387 1.19027 1.21260 1.03289 0.91175 1.02772 1.20476 0.97429 0.95854 0.97424 1.23307 0.98905 0.90421 0.96615 0.93112 0.92170 0.91596 0.90285 0.94278 0.85277 0.90100 0.94125 0.92318 0.92839 0.91620 0.94469 0.89502 0.95741 0.91803 0.89607 0.89176 0.90914 0.86634 0.90183 0.90425 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 7.55 37.16 0.28 -1.04 16 2 C -0.06 -0.68 1.07 -151.97 -0.16 -0.84 16 3 C 0.04 0.44 6.64 -2.25 -0.01 0.42 16 4 N -0.66 -6.83 7.62 -109.83 -0.84 -7.67 16 5 C 0.04 0.47 6.63 -2.25 -0.01 0.45 16 6 C -0.06 -0.73 1.07 -151.96 -0.16 -0.89 16 7 C -0.12 -1.50 7.59 37.16 0.28 -1.21 16 8 C 0.05 0.74 4.88 -2.26 -0.01 0.72 16 9 N -0.50 -7.99 5.32 -231.61 -1.23 -9.22 16 10 C 0.11 1.95 4.97 -4.98 -0.02 1.93 16 11 C -0.20 -4.43 5.22 -104.33 -0.54 -4.97 16 12 C -0.07 -1.58 9.67 -39.66 -0.38 -1.97 16 13 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 14 C 0.11 3.03 5.58 -106.82 -0.60 2.43 16 15 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 17 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 18 N -0.79 -20.64 10.95 55.55 0.61 -20.03 16 19 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 24 C -0.09 -2.15 8.88 -39.66 -0.35 -2.50 16 25 C 0.04 0.47 5.63 -2.26 -0.01 0.46 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.64 7.25 -51.93 -0.38 0.26 16 28 H 0.07 0.78 7.20 -51.93 -0.37 0.41 16 29 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 30 H 0.04 0.40 7.15 -51.93 -0.37 0.03 16 31 H 0.33 2.84 8.92 -39.29 -0.35 2.49 16 32 H 0.08 0.88 7.90 -51.93 -0.41 0.46 16 33 H 0.04 0.47 7.16 -51.93 -0.37 0.09 16 34 H 0.06 0.67 7.24 -51.93 -0.38 0.29 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.87 7.20 -51.93 -0.37 0.50 16 37 H 0.04 0.57 6.76 -51.93 -0.35 0.22 16 38 H 0.09 1.52 7.65 -51.93 -0.40 1.12 16 39 H 0.02 0.43 7.71 -51.93 -0.40 0.03 16 40 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 45 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 46 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 47 H 0.04 0.47 7.01 -51.93 -0.36 0.10 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -27.17 358.67 -11.69 -38.86 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.74 Total: 7.57 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -2.86 Total: -28.65 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -1.46 Total: -36.93 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.17 -11.69 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702580607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.513 kcal (2) G-P(sol) polarization free energy of solvation -27.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds