Wall clock time and date at job start Fri Apr 10 2020 20:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47300 * 65.00013 * 4 3 2 6 6 C 1.42902 * 113.99996 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47108 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47193 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00378 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00386 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.64166 * 323.31065 * 11 10 8 13 13 C 1.55163 * 110.72034 * 86.45098 * 11 10 8 14 14 C 1.54909 * 101.57760 * 153.86804 * 13 11 10 15 15 N 1.47427 * 104.83624 * 322.98698 * 14 13 11 16 16 C 1.36931 * 125.65105 * 204.09447 * 15 14 13 17 17 H 1.08005 * 120.00027 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00025 * 0.02675 * 16 15 14 19 19 N 1.31623 * 120.00041 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00061 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47103 * 60.00047 * 20 18 16 22 22 H 1.48499 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47009 * 300.00305 * 20 18 16 24 24 C 1.47020 * 108.69826 * 24.13523 * 15 14 13 25 25 H 1.08999 * 109.88059 * 239.52212 * 24 15 14 26 26 C 1.53000 * 109.88569 * 118.35821 * 24 15 14 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 30 30 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 31 31 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 32 32 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 33 33 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 34 34 H 1.09003 * 109.46642 * 299.99979 * 6 5 4 35 35 H 1.09004 * 109.47116 * 59.99483 * 6 5 4 36 36 H 1.09004 * 109.46831 * 299.99810 * 7 6 5 37 37 H 1.08995 * 109.47061 * 59.99549 * 7 6 5 38 38 H 0.97002 * 119.99302 * 359.97438 * 10 8 7 39 39 H 1.08997 * 111.00561 * 271.93684 * 13 11 10 40 40 H 1.08996 * 111.00424 * 35.79219 * 13 11 10 41 41 H 1.09001 * 110.36917 * 81.83301 * 14 13 11 42 42 H 1.09007 * 110.36303 * 204.04461 * 14 13 11 43 43 H 0.96999 * 119.99742 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.46434 * 302.18752 * 26 24 15 45 45 H 1.08994 * 109.47162 * 62.18625 * 26 24 15 46 46 H 1.08996 * 109.47213 * 182.19022 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4190 -1.3246 7 6 5.7246 -0.2341 -2.6648 8 6 7.2182 -0.4029 -2.7733 9 8 7.9372 -0.0364 -1.8679 10 7 7.7550 -0.9610 -3.8764 11 6 9.2069 -1.1246 -3.9821 12 1 9.7230 -0.2784 -3.5284 13 6 9.6583 -2.4574 -3.3283 14 6 10.9646 -2.7578 -4.1048 15 7 10.6931 -2.3172 -5.4852 16 6 11.3261 -2.7773 -6.6089 17 1 11.0539 -2.3890 -7.5793 18 6 12.3176 -3.7427 -6.5009 19 7 12.6490 -4.2163 -5.3184 20 14 13.1806 -4.3709 -8.0339 21 1 13.8544 -3.2401 -8.7211 22 1 14.1902 -5.3904 -7.6510 23 1 12.1828 -4.9821 -8.9483 24 6 9.6308 -1.3013 -5.4554 25 1 8.7799 -1.6372 -6.0481 26 6 10.1620 0.0234 -6.0066 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 3.9786 2.1764 0.0890 33 1 3.8514 0.5681 0.8409 34 1 5.8629 1.3948 -1.2622 35 1 5.7350 -0.2136 -0.5104 36 1 5.2428 -1.2099 -2.7276 37 1 5.3708 0.3988 -3.4786 38 1 7.1799 -1.2544 -4.6003 39 1 9.8578 -2.3233 -2.2652 40 1 8.9188 -3.2417 -3.4896 41 1 11.7955 -2.1925 -3.6826 42 1 11.1827 -3.8256 -4.0816 43 1 13.3421 -4.8907 -5.2429 44 1 11.0239 0.3414 -5.4200 45 1 10.4591 -0.1089 -7.0468 46 1 9.3812 0.7816 -5.9453 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689340377.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:09 Heat of formation + Delta-G solvation = -106.934067 kcal Electronic energy + Delta-G solvation = -24369.724218 eV Core-core repulsion = 20681.426328 eV Total energy + Delta-G solvation = -3688.297889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79367 -38.69623 -37.72866 -37.23868 -34.01003 -32.42784 -31.79979 -30.38541 -29.95755 -28.50860 -26.61108 -25.12223 -24.00270 -23.24847 -22.86053 -20.50554 -20.10809 -19.48129 -17.56818 -17.15350 -16.78398 -16.43643 -16.07965 -15.95394 -15.54427 -15.36232 -14.76751 -14.72505 -14.06349 -13.81594 -13.62690 -13.39425 -13.09488 -12.79699 -12.60375 -12.13268 -12.05262 -11.91937 -11.68270 -11.56581 -11.39818 -11.25627 -11.14066 -10.85251 -10.82572 -10.51903 -10.40204 -10.12105 -10.06032 -9.80461 -9.77253 -9.66986 -9.52887 -8.68054 -8.59881 -6.87656 -5.65242 -3.08334 2.78683 3.02055 3.40000 3.40761 3.44253 3.45752 3.77388 4.48371 4.63223 4.74545 4.79994 4.90301 4.93471 4.97721 5.00582 5.13291 5.21581 5.30501 5.32897 5.36365 5.42233 5.46815 5.54908 5.63992 5.67568 5.72883 5.82956 6.12594 6.26039 6.31563 6.36054 6.54927 6.61421 6.73088 6.75958 6.87132 6.97629 7.11587 7.52172 7.62050 7.73119 7.85601 8.34416 8.41022 9.20565 9.81478 10.45467 11.37936 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.036378 B = 0.002190 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.508984 B =12781.687236 C =12858.959866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.065 3.935 5 O -0.385 6.385 6 C 0.079 3.921 7 C -0.139 4.139 8 C 0.516 3.484 9 O -0.547 6.547 10 N -0.714 5.714 11 C 0.135 3.865 12 H 0.091 0.909 13 C -0.153 4.153 14 C 0.152 3.848 15 N -0.595 5.595 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.155 3.845 25 H 0.036 0.964 26 C -0.155 4.155 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.399 0.601 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.014 0.986 42 H 0.109 0.891 43 H 0.253 0.747 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.198 10.625 8.809 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.012 4.012 5 O -0.304 6.304 6 C 0.002 3.998 7 C -0.179 4.179 8 C 0.302 3.698 9 O -0.425 6.425 10 N -0.365 5.365 11 C 0.031 3.969 12 H 0.109 0.891 13 C -0.192 4.192 14 C 0.027 3.973 15 N -0.320 5.320 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.047 3.953 25 H 0.054 0.946 26 C -0.215 4.215 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.233 0.767 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.127 0.873 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -20.498 10.492 9.249 24.815 hybrid contribution 0.184 -0.059 -0.972 0.991 sum -20.313 10.433 8.277 24.290 Atomic orbital electron populations 1.22751 0.81106 1.02911 0.99814 1.87980 1.19555 1.27325 1.95359 1.22579 0.92479 0.85498 1.00830 1.22486 0.93110 0.97716 0.87868 1.87860 1.22351 1.82231 1.37959 1.22120 0.80616 1.00249 0.96848 1.21459 0.93197 1.04042 0.99221 1.20302 0.89881 0.77305 0.82308 1.90702 1.62940 1.50166 1.38647 1.46065 1.08699 1.61947 1.19747 1.22153 0.78593 0.99009 0.97194 0.89108 1.23394 1.00789 0.95677 0.99379 1.21953 0.90116 1.03128 0.82062 1.44478 1.40991 1.43037 1.03504 1.18972 1.13720 1.16777 0.85438 0.90511 1.24799 0.99283 0.99594 0.96973 1.69789 1.33713 1.32584 1.20833 0.86152 0.79111 0.78314 0.81890 1.21244 1.21593 1.21185 1.20989 0.92446 0.90097 0.91768 0.94620 1.22242 1.00148 0.97380 1.01709 0.89540 0.94019 0.94230 0.92375 0.91841 0.91656 0.92280 0.92474 0.92288 0.88025 0.88221 0.76655 0.91989 0.91997 0.96798 0.87327 0.93639 0.92934 0.92710 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.84 10.67 -40.08 -0.43 -4.27 16 3 C 0.06 0.48 6.32 37.16 0.23 0.72 16 4 C 0.06 0.57 6.32 37.16 0.23 0.80 16 5 O -0.38 -4.38 10.31 -40.08 -0.41 -4.79 16 6 C 0.08 0.89 5.23 37.16 0.19 1.09 16 7 C -0.14 -1.51 6.07 -27.89 -0.17 -1.68 16 8 C 0.52 7.47 7.83 -10.99 -0.09 7.38 16 9 O -0.55 -9.95 15.71 5.56 0.09 -9.86 16 10 N -0.71 -10.34 5.20 -52.03 -0.27 -10.61 16 11 C 0.13 2.46 2.76 -66.10 -0.18 2.27 16 12 H 0.09 1.78 7.41 -51.93 -0.38 1.39 16 13 C -0.15 -3.06 6.77 -24.58 -0.17 -3.23 16 14 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 15 N -0.59 -14.81 3.13 -162.57 -0.51 -15.32 16 16 C -0.22 -5.99 9.89 -15.06 -0.15 -6.14 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.68 10.09 55.49 0.56 -26.12 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.16 3.10 3.48 -66.95 -0.23 2.86 16 25 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 26 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.65 8.10 -51.93 -0.42 0.22 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.40 4.75 8.31 -40.82 -0.34 4.41 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.11 2.97 5.88 -51.92 -0.31 2.67 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -32.76 375.80 -7.47 -40.22 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.15 Total: 2.03 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 1.02 Total: 6.18 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.22 Total: -52.04 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.75 Total: -18.92 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.76 -7.47 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689340377.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.712 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds