Wall clock time and date at job start Fri Apr 10 2020 20:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46952 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.46914 * 179.97438 * 5 4 3 7 7 C 1.42903 * 114.00384 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47225 * 179.97438 * 7 6 5 9 9 O 1.21277 * 120.00475 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99724 * 180.02562 * 8 7 6 11 11 C 1.47020 * 125.64874 * 0.02886 * 10 8 7 12 12 C 1.54329 * 107.26947 * 178.90342 * 11 10 8 13 13 C 1.55151 * 102.94113 * 337.80628 * 12 11 10 14 14 H 1.08998 * 111.00750 * 277.42742 * 13 12 11 15 15 C 1.53009 * 111.00175 * 153.57588 * 13 12 11 16 16 N 1.46503 * 109.46728 * 174.99918 * 15 13 12 17 17 C 1.36938 * 119.99612 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00273 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00030 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00025 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99996 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46901 * 89.99422 * 21 19 17 23 23 H 1.48495 * 109.47230 * 209.99463 * 21 19 17 24 24 H 1.48498 * 109.46802 * 329.99965 * 21 19 17 25 25 C 1.47433 * 125.64652 * 179.72012 * 10 8 7 26 26 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 28 28 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 30 30 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 31 31 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 32 32 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 33 33 H 1.08996 * 109.47094 * 299.99658 * 5 4 3 34 34 H 1.08995 * 109.47498 * 60.00027 * 5 4 3 35 35 H 1.08992 * 109.47042 * 300.00562 * 7 6 5 36 36 H 1.09003 * 109.46717 * 60.00022 * 7 6 5 37 37 H 1.09000 * 109.88164 * 298.31567 * 11 10 8 38 38 H 1.08993 * 109.88494 * 59.48481 * 11 10 8 39 39 H 1.08996 * 110.71769 * 96.16967 * 12 11 10 40 40 H 1.09000 * 110.71838 * 219.44249 * 12 11 10 41 41 H 1.08999 * 109.47008 * 294.99760 * 15 13 12 42 42 H 1.08993 * 109.46971 * 55.00345 * 15 13 12 43 43 H 0.97002 * 120.00416 * 0.02562 * 16 15 13 44 44 H 0.97004 * 119.99712 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.36345 * 323.00394 * 25 10 8 46 46 H 1.08997 * 110.36494 * 85.32795 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 8 5.5822 2.4698 0.0000 7 6 6.2647 3.7253 0.0000 8 6 7.7528 3.4880 0.0006 9 8 8.1864 2.3554 0.0006 10 7 8.6020 4.5347 0.0013 11 6 8.2142 5.9528 0.0020 12 6 9.5145 6.7834 0.0308 13 6 10.5503 5.7873 0.6157 14 1 10.4951 5.7603 1.7039 15 6 11.9662 6.1313 0.1488 16 7 12.9275 5.2472 0.8127 17 6 14.2657 5.3702 0.5496 18 1 14.6125 6.1192 -0.1470 19 6 15.1766 4.5329 1.1789 20 7 16.4628 4.6508 0.9257 21 14 14.5769 3.2379 2.3843 22 1 14.2968 1.9750 1.6551 23 1 15.6220 2.9954 3.4109 24 1 13.3350 3.7140 3.0448 25 6 10.0738 4.4470 0.0078 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 3.8574 0.6437 0.8891 32 1 3.8567 0.6441 -0.8909 33 1 3.8357 3.1239 -0.8895 34 1 3.8364 3.1229 0.8904 35 1 5.9867 4.2899 -0.8899 36 1 5.9867 4.2898 0.8900 37 1 7.6475 6.1826 -0.9003 38 1 7.6143 6.1726 0.8851 39 1 9.7993 7.0890 -0.9760 40 1 9.4037 7.6509 0.6814 41 1 12.0353 5.9978 -0.9307 42 1 12.1906 7.1674 0.4021 43 1 12.6161 4.5748 1.4386 44 1 17.0993 4.0655 1.3652 45 1 10.4012 3.6115 0.6265 46 1 10.4518 4.3385 -1.0088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690747413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:53:15 Heat of formation + Delta-G solvation = -112.707758 kcal Electronic energy + Delta-G solvation = -23839.224586 eV Core-core repulsion = 20150.676331 eV Total energy + Delta-G solvation = -3688.548255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.19759 -38.74273 -38.17578 -37.27339 -34.86801 -33.25218 -32.35875 -30.83213 -29.36308 -28.44984 -27.28156 -25.49656 -24.79472 -23.33829 -22.09319 -21.74135 -20.34309 -19.46690 -17.74192 -17.47884 -17.15447 -16.91612 -16.66524 -16.35924 -15.86720 -15.37192 -15.13612 -14.84489 -14.49753 -14.06612 -13.83862 -13.67987 -13.55113 -12.93993 -12.79904 -12.62369 -12.44295 -12.33020 -12.26156 -12.00575 -11.88519 -11.73761 -11.50592 -11.42995 -10.97283 -10.72802 -10.66946 -10.53306 -10.17357 -10.11671 -10.07658 -9.81941 -9.58092 -8.89594 -8.70214 -7.23857 -5.76167 -3.12241 2.43878 2.52797 3.13506 3.40780 3.44753 3.49321 3.78290 4.28657 4.43643 4.49728 4.61148 4.61657 4.65383 4.70952 4.76637 4.78609 4.81538 4.85567 4.90091 4.95442 4.96391 5.07014 5.13944 5.20185 5.30129 5.43553 5.55024 5.64675 5.71675 5.73223 5.75624 5.80330 5.88394 6.09527 6.14005 6.25516 6.57307 6.63077 6.68454 6.72267 7.41857 7.98795 8.09996 8.42558 9.21193 9.93789 10.12599 11.42019 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.002193 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.140527 B =12764.533507 C =13661.862603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.121 4.121 5 C 0.066 3.934 6 O -0.361 6.361 7 C 0.052 3.948 8 C 0.525 3.475 9 O -0.517 6.517 10 N -0.620 5.620 11 C 0.098 3.902 12 C -0.124 4.124 13 C -0.111 4.111 14 H 0.085 0.915 15 C 0.170 3.830 16 N -0.757 5.757 17 C -0.247 4.247 18 H 0.091 0.909 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.883 3.117 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.114 3.886 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.079 0.921 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.559 1.834 -2.262 33.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.158 4.158 5 C -0.011 4.011 6 O -0.279 6.279 7 C -0.028 4.028 8 C 0.312 3.688 9 O -0.391 6.391 10 N -0.356 5.356 11 C -0.025 4.025 12 C -0.162 4.162 13 C -0.130 4.130 14 H 0.103 0.897 15 C 0.042 3.958 16 N -0.402 5.402 17 C -0.377 4.377 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.007 4.007 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -32.967 0.868 -2.369 33.063 hybrid contribution -0.689 -0.336 0.911 1.191 sum -33.656 0.532 -1.459 33.692 Atomic orbital electron populations 1.22765 0.80720 1.02991 1.00022 1.87890 1.19910 1.27695 1.95427 1.22357 0.93408 0.84958 1.00376 1.21355 0.92526 0.96658 1.05271 1.22355 0.80965 0.97331 1.00478 1.88012 1.17507 1.26948 1.95426 1.22157 0.90743 0.87446 1.02458 1.19818 0.87430 0.84207 0.77320 1.90767 1.78409 1.21755 1.48181 1.48515 1.07618 1.05833 1.73681 1.22110 0.98316 0.80719 1.01345 1.22637 0.93077 0.97783 1.02690 1.22620 0.96073 0.93523 1.00815 0.89698 1.20565 0.85167 0.94248 0.95822 1.42728 1.03934 1.40992 1.52591 1.19039 0.80861 1.15886 1.21865 0.89156 1.24662 0.95104 0.99272 0.99913 1.69702 1.00338 1.41402 1.46653 0.86578 0.77686 0.82768 0.81680 1.20874 1.21681 1.20382 1.22340 0.77494 0.98917 1.01959 0.93975 0.93984 0.89434 0.93055 0.93049 0.89902 0.89893 0.92889 0.92900 0.90283 0.90304 0.91354 0.91457 0.89960 0.89709 0.95094 0.94894 0.80607 0.93035 0.90226 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.39 10.70 -35.23 -0.38 -3.77 16 3 C 0.07 0.44 5.94 37.16 0.22 0.66 16 4 C -0.12 -0.99 5.95 -26.73 -0.16 -1.15 16 5 C 0.07 0.50 5.94 37.16 0.22 0.72 16 6 O -0.36 -4.34 9.88 -55.14 -0.54 -4.89 16 7 C 0.05 0.51 5.61 36.00 0.20 0.72 16 8 C 0.53 7.62 7.93 -10.99 -0.09 7.53 16 9 O -0.52 -10.16 16.76 -14.35 -0.24 -10.40 16 10 N -0.62 -8.03 3.33 -170.66 -0.57 -8.60 16 11 C 0.10 0.85 6.49 -3.06 -0.02 0.83 16 12 C -0.12 -1.19 6.42 -24.90 -0.16 -1.35 16 13 C -0.11 -1.56 3.03 -88.59 -0.27 -1.83 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.17 3.07 5.72 -4.04 -0.02 3.05 16 16 N -0.76 -17.83 5.35 -59.90 -0.32 -18.15 16 17 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 18 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 19 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 20 N -0.93 -29.57 13.97 55.49 0.78 -28.79 16 21 Si 0.88 22.67 27.74 -169.99 -4.71 17.96 16 22 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 25 C 0.11 1.76 6.32 -2.64 -0.02 1.74 16 26 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.03 0.57 7.96 -51.93 -0.41 0.15 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 45 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 46 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -36.87 378.89 -7.75 -44.62 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.24 Total: 1.17 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 0.77 Total: 5.13 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.11 Total: -55.54 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.16 Total: -19.05 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.87 -7.75 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690747413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.087 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds