Wall clock time and date at job start Fri Apr 10 2020 20:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99610 * 2 1 4 4 C 1.46901 * 111.00414 * 123.95088 * 2 1 3 5 5 C 1.53001 * 109.47419 * 170.00194 * 4 2 1 6 6 C 1.52995 * 109.47045 * 180.02562 * 5 4 2 7 7 C 1.53118 * 109.52089 * 184.99729 * 6 5 4 8 8 C 1.53033 * 109.27790 * 182.38017 * 7 6 5 9 9 N 1.46852 * 109.52507 * 59.18085 * 8 7 6 10 10 C 1.46902 * 110.99971 * 174.15820 * 9 8 7 11 11 C 1.53001 * 109.46901 * 169.99744 * 10 9 8 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00026 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00056 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99640 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47282 * 59.99711 * 18 16 14 20 20 H 1.48497 * 109.47200 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47280 * 300.00084 * 18 16 14 22 22 C 1.46839 * 111.19741 * 298.25593 * 9 8 7 23 23 C 1.53039 * 109.52305 * 61.74163 * 22 9 8 24 24 H 1.09004 * 109.47261 * 296.04207 * 1 2 3 25 25 H 1.08997 * 109.47201 * 56.04755 * 1 2 3 26 26 H 1.09001 * 109.46847 * 176.05019 * 1 2 3 27 27 H 1.09001 * 109.47035 * 183.95260 * 3 2 1 28 28 H 1.08995 * 109.47266 * 303.95066 * 3 2 1 29 29 H 1.09001 * 109.47211 * 63.95580 * 3 2 1 30 30 H 1.08998 * 109.46629 * 50.00031 * 4 2 1 31 31 H 1.08996 * 109.47165 * 290.00409 * 4 2 1 32 32 H 1.09004 * 109.46701 * 60.00118 * 5 4 2 33 33 H 1.09004 * 109.46866 * 300.00273 * 5 4 2 34 34 H 1.08991 * 109.52545 * 305.12604 * 6 5 4 35 35 H 1.08998 * 109.49987 * 62.44200 * 7 6 5 36 36 H 1.09004 * 109.50544 * 302.32084 * 7 6 5 37 37 H 1.09005 * 109.46805 * 299.16244 * 8 7 6 38 38 H 1.09009 * 109.45643 * 179.19582 * 8 7 6 39 39 H 1.09001 * 109.46712 * 50.00147 * 10 9 8 40 40 H 1.09002 * 109.47411 * 290.00258 * 10 9 8 41 41 H 1.09001 * 109.46652 * 60.00371 * 11 10 9 42 42 H 1.08992 * 109.47514 * 300.00460 * 11 10 9 43 43 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 44 44 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 45 45 H 0.97010 * 119.99946 * 180.02562 * 17 16 14 46 46 H 1.09001 * 109.46400 * 181.75406 * 22 9 8 47 47 H 1.08995 * 109.46502 * 301.72618 * 22 9 8 48 48 H 1.08994 * 109.50793 * 180.87369 * 23 22 9 49 49 H 1.09003 * 109.50071 * 60.75960 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5046 -0.9552 0.9704 6 6 4.0527 -1.7534 2.1549 7 6 5.5783 -1.8368 2.0535 8 6 6.1157 -2.6860 3.2076 9 7 5.5287 -4.0305 3.1425 10 6 6.1258 -4.9152 4.1518 11 6 5.3272 -6.2182 4.2245 12 6 5.9488 -7.1393 5.2762 13 16 5.0045 -8.6811 5.3617 14 6 5.9121 -9.5269 6.6128 15 1 6.7711 -9.0564 7.0682 16 6 5.5240 -10.7982 7.0124 17 7 4.4775 -11.3717 6.4569 18 14 6.4867 -11.6952 8.3382 19 1 6.4595 -10.9009 9.5927 20 1 5.8735 -13.0257 8.5808 21 1 7.8929 -11.8722 7.8949 22 6 4.0681 -3.9797 3.2852 23 6 3.4695 -3.1691 2.1334 24 1 -0.3634 0.4512 0.9234 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0827 1.3434 -0.0708 28 1 1.5898 1.9164 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.5091 -1.7406 1.1756 31 1 1.7976 -0.2247 2.0628 32 1 3.9910 0.0195 0.9323 33 1 3.7025 -1.4965 0.0451 34 1 3.7760 -1.2596 3.0862 35 1 6.0021 -0.8343 2.1113 36 1 5.8554 -2.2956 1.1044 37 1 5.8501 -2.2194 4.1563 38 1 7.2005 -2.7592 3.1301 39 1 6.1064 -4.4224 5.1239 40 1 7.1573 -5.1360 3.8770 41 1 5.3467 -6.7109 3.2524 42 1 4.2959 -5.9974 4.4993 43 1 6.9803 -7.3601 5.0018 44 1 5.9290 -6.6464 6.2482 45 1 4.2060 -12.2601 6.7364 46 1 3.6656 -4.9925 3.2641 47 1 3.8121 -3.5070 4.2334 48 1 2.3868 -3.1184 2.2481 49 1 3.7135 -3.6489 1.1855 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074982102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:51:09 Heat of formation + Delta-G solvation = -20.536245 kcal Electronic energy + Delta-G solvation = -22026.945032 eV Core-core repulsion = 18920.979599 eV Total energy + Delta-G solvation = -3105.965433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55478 -37.90616 -35.47478 -32.65768 -32.39161 -30.87569 -29.72382 -27.94986 -26.30075 -25.53100 -24.19899 -23.54442 -22.34241 -20.86385 -20.41623 -19.74433 -17.45146 -16.27879 -15.93716 -15.55241 -15.25440 -15.15765 -14.83976 -14.78890 -14.42047 -14.15325 -13.99926 -13.62242 -13.21910 -12.93059 -12.84221 -12.69785 -12.37941 -12.24441 -12.11756 -11.79614 -11.73417 -11.56893 -11.32528 -11.24591 -11.10879 -11.03430 -10.78632 -10.75802 -10.64024 -10.45938 -10.27402 -10.02603 -9.49491 -9.03472 -8.72789 -8.28370 -8.23587 -6.50692 -6.20921 -3.90981 3.22802 3.24326 3.28854 3.56589 3.58498 3.97855 4.24511 4.47403 4.61184 4.66792 4.80381 4.86804 4.99549 5.02853 5.10130 5.14863 5.20946 5.22763 5.29311 5.32110 5.34913 5.37057 5.39689 5.49287 5.51804 5.53440 5.56245 5.59177 5.67626 5.75067 5.79463 5.86056 5.87397 5.96943 5.99302 6.02870 6.08918 6.21396 6.33636 6.36284 6.61860 6.65526 6.68024 6.76405 7.16156 7.18105 7.61943 8.38190 9.25145 10.87201 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.031941 B = 0.002086 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.419064 B =13418.369776 C =14129.104336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.549 5.549 3 C 0.021 3.979 4 C 0.052 3.948 5 C -0.108 4.108 6 C -0.088 4.088 7 C -0.108 4.108 8 C 0.056 3.944 9 N -0.536 5.536 10 C 0.060 3.940 11 C -0.100 4.100 12 C -0.112 4.112 13 S -0.133 6.133 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.071 3.929 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.046 3.954 23 C -0.111 4.111 24 H 0.024 0.976 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.267 0.733 46 H 0.088 0.912 47 H 0.029 0.971 48 H 0.065 0.935 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 24.913 -11.242 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.075 4.075 5 C -0.146 4.146 6 C -0.107 4.107 7 C -0.146 4.146 8 C -0.073 4.073 9 N -0.261 5.261 10 C -0.069 4.069 11 C -0.139 4.139 12 C -0.262 4.262 13 S 0.096 5.904 14 C -0.665 4.665 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.082 4.082 23 C -0.149 4.149 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.048 0.952 48 H 0.083 0.917 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.177 23.987 -12.720 27.471 hybrid contribution 1.217 0.553 3.191 3.459 sum -2.960 24.540 -9.529 26.492 Atomic orbital electron populations 1.22387 0.87336 1.02419 1.00348 1.61999 1.07827 1.13865 1.43543 1.22438 1.01168 0.88867 1.00257 1.22250 0.96220 0.98273 0.90804 1.21618 0.94007 1.00096 0.98908 1.21196 0.95421 0.96018 0.98049 1.21602 0.94714 0.98912 0.99399 1.22064 0.99280 0.88861 0.97058 1.61993 1.04663 1.09814 1.49661 1.22182 0.99119 0.93151 0.92415 1.21437 0.99062 0.93661 0.99729 1.23235 1.02478 1.00473 0.99980 1.84603 1.41749 1.10873 1.53222 1.22652 1.16389 1.03748 1.23690 0.91044 1.25015 0.95358 0.96466 0.96975 1.70014 1.24221 1.15209 1.41092 0.86226 0.79770 0.78489 0.81054 1.19983 1.20814 1.19935 1.22248 0.87963 1.01220 0.96727 1.21692 0.99120 0.94445 0.99620 0.95771 0.91437 0.91197 0.91036 0.91573 0.95812 0.90335 0.95055 0.92149 0.90869 0.91838 0.91927 0.90921 0.95283 0.90932 0.95150 0.90757 0.90709 0.91421 0.92086 0.92399 0.92274 0.89402 0.95245 0.91680 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.06 0.57 0.73 16 2 N -0.55 -4.43 5.02 -251.26 -1.26 -5.69 16 3 C 0.02 0.14 9.32 60.07 0.56 0.70 16 4 C 0.05 0.41 4.72 -3.82 -0.02 0.40 16 5 C -0.11 -0.85 4.61 -26.73 -0.12 -0.97 16 6 C -0.09 -0.75 2.25 -90.50 -0.20 -0.96 16 7 C -0.11 -0.96 5.38 -26.65 -0.14 -1.11 16 8 C 0.06 0.59 5.42 -3.83 -0.02 0.57 16 9 N -0.54 -6.76 4.81 -234.67 -1.13 -7.89 16 10 C 0.06 0.84 5.27 -3.82 -0.02 0.82 16 11 C -0.10 -1.67 4.47 -26.73 -0.12 -1.79 16 12 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 13 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 14 C -0.52 -14.99 9.50 30.94 0.29 -14.70 16 15 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 16 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 17 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 18 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 C 0.05 0.55 4.85 -3.84 -0.02 0.53 16 23 C -0.11 -1.09 5.08 -26.65 -0.14 -1.23 16 24 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 26 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.07 0.46 6.47 -51.93 -0.34 0.12 16 28 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.64 6.56 -51.93 -0.34 0.30 16 31 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.73 8.12 -51.92 -0.42 0.31 16 39 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.13 6.21 -51.93 -0.32 0.81 16 43 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 44 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.09 1.15 5.81 -51.93 -0.30 0.85 16 47 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.58 6.71 -51.93 -0.35 0.23 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -30.87 385.92 -11.98 -42.86 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -9.56 Total: -3.34 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 0.74 Total: -17.16 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -1.66 Total: -39.05 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.87 -11.98 -42.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074982102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.322 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds