Wall clock time and date at job start Fri Apr 10 2020 20:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86800 * 119.99859 * 2 1 4 4 H 1.48494 * 109.47244 * 270.00056 * 3 2 1 5 5 H 1.48502 * 109.47247 * 29.99963 * 3 2 1 6 6 H 1.48504 * 109.46996 * 149.99682 * 3 2 1 7 7 C 1.38795 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99378 * 0.02562 * 7 2 1 9 9 O 1.34855 * 120.00085 * 179.97438 * 7 2 1 10 10 C 1.34797 * 116.99543 * 180.02562 * 9 7 2 11 11 O 1.21560 * 120.00534 * 0.02562 * 10 9 7 12 12 C 1.47203 * 119.99818 * 180.02562 * 10 9 7 13 13 C 1.40081 * 120.61855 * 0.02562 * 12 10 9 14 14 C 1.38302 * 118.36242 * 179.97438 * 13 12 10 15 15 C 1.38447 * 119.52426 * 0.02562 * 14 13 12 16 16 N 1.31805 * 121.25359 * 359.73640 * 15 14 13 17 17 C 1.32491 * 121.77741 * 0.53227 * 16 15 14 18 18 S 1.76196 * 119.84009 * 179.75360 * 17 16 15 19 19 C 1.76194 * 99.99999 * 4.89485 * 18 17 16 20 20 C 1.38947 * 120.07974 * 85.13674 * 19 18 17 21 21 C 1.38087 * 119.92446 * 179.97438 * 20 19 18 22 22 C 1.38297 * 120.07596 * 359.97438 * 21 20 19 23 23 C 1.38293 * 120.15577 * 0.29433 * 22 21 20 24 24 C 1.38087 * 120.07895 * 359.45307 * 23 22 21 25 25 H 0.96997 * 120.00360 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.82216 * 359.95769 * 13 12 10 27 27 H 1.07993 * 120.23210 * 180.02562 * 14 13 12 28 28 H 1.08001 * 119.36858 * 179.97438 * 15 14 13 29 29 H 1.08007 * 120.03499 * 359.95373 * 20 19 18 30 30 H 1.08001 * 119.95931 * 179.97438 * 21 20 19 31 31 H 1.08006 * 119.92134 * 180.02562 * 22 21 20 32 32 H 1.08006 * 119.96130 * 179.72390 * 23 22 21 33 33 H 1.07997 * 120.04156 * 180.25306 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4402 0.7001 7 6 2.0083 -1.2019 0.0005 8 1 1.4683 -2.1372 0.0005 9 8 3.3569 -1.2019 0.0000 10 6 3.9688 -2.4029 0.0000 11 8 3.3068 -3.4225 0.0001 12 6 5.4388 -2.4799 0.0001 13 6 6.2144 -1.3134 0.0006 14 6 7.5916 -1.4401 0.0011 15 6 8.1607 -2.7022 0.0006 16 7 7.4145 -3.7887 0.0048 17 6 6.0911 -3.7264 -0.0008 18 16 5.1434 -5.2118 -0.0014 19 6 6.4357 -6.3992 0.1546 20 6 6.9242 -6.7358 1.4111 21 6 7.9367 -7.6673 1.5297 22 6 8.4641 -8.2653 0.3997 23 6 7.9841 -7.9287 -0.8528 24 6 6.9682 -7.0019 -0.9785 25 1 -0.4850 0.8400 0.0004 26 1 5.7485 -0.3392 0.0003 27 1 8.2185 -0.5608 0.0020 28 1 9.2364 -2.7982 0.0006 29 1 6.5127 -6.2691 2.2939 30 1 8.3171 -7.9290 2.5060 31 1 9.2557 -8.9939 0.4954 32 1 8.4013 -8.3944 -1.7334 33 1 6.5910 -6.7425 -1.9566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022859372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:14 Heat of formation + Delta-G solvation = -7.651376 kcal Electronic energy + Delta-G solvation = -20691.508862 eV Core-core repulsion = 17388.193133 eV Total energy + Delta-G solvation = -3303.315729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07983 -38.93562 -38.70323 -35.51400 -32.70897 -32.30885 -31.26761 -30.95603 -30.79256 -26.11620 -24.10825 -23.53660 -22.62138 -22.55856 -20.47912 -18.28761 -18.03499 -17.47614 -16.87582 -16.09729 -15.72189 -15.25568 -15.11636 -14.85555 -14.58014 -14.15188 -13.76969 -13.71392 -13.43869 -13.21657 -12.70815 -12.62905 -12.45970 -11.98193 -11.53782 -11.43284 -11.19947 -10.65952 -10.62200 -10.46827 -10.00226 -9.83724 -9.56446 -9.45141 -9.08565 -8.93721 -8.80134 -8.73754 -7.34161 -6.50039 -4.20308 0.78153 0.95596 1.27214 1.41060 2.04484 2.56874 3.08309 3.16160 3.25786 3.31618 3.78244 3.91509 4.03159 4.13744 4.70596 4.86115 4.91919 4.94948 5.02624 5.03190 5.11241 5.26951 5.41968 5.42595 5.49206 5.74947 5.97816 6.01181 6.16563 6.32679 6.33911 6.39898 6.42831 6.62992 6.90193 7.58674 7.81188 7.91434 8.48084 8.86584 9.52666 10.57395 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.025728 B = 0.004080 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.040301 B = 6861.336510 C = 7643.854841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.372 4.372 8 H 0.114 0.886 9 O -0.238 6.238 10 C 0.442 3.558 11 O -0.511 6.511 12 C -0.132 4.132 13 C -0.019 4.019 14 C -0.194 4.194 15 C 0.125 3.875 16 N -0.483 5.483 17 C 0.133 3.867 18 S 0.142 5.858 19 C -0.161 4.161 20 C -0.058 4.058 21 C -0.134 4.134 22 C -0.099 4.099 23 C -0.134 4.134 24 C -0.059 4.059 25 H 0.282 0.718 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.157 0.843 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.453 -8.315 0.412 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.447 4.447 8 H 0.132 0.868 9 O -0.146 6.146 10 C 0.289 3.711 11 O -0.408 6.408 12 C -0.143 4.143 13 C -0.046 4.046 14 C -0.217 4.217 15 C -0.037 4.037 16 N -0.196 5.196 17 C -0.114 4.114 18 S 0.390 5.610 19 C -0.272 4.272 20 C -0.078 4.078 21 C -0.153 4.153 22 C -0.117 4.117 23 C -0.154 4.154 24 C -0.080 4.080 25 H 0.093 0.907 26 H 0.167 0.833 27 H 0.156 0.844 28 H 0.174 0.826 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.156 -9.563 0.337 19.644 hybrid contribution 1.347 1.921 0.081 2.348 sum 18.502 -7.642 0.417 20.023 Atomic orbital electron populations 1.69589 1.05757 1.28747 1.46029 1.24580 0.95040 0.98783 0.95484 0.86235 0.80377 0.81415 0.79086 1.19626 1.20502 1.18313 1.20756 0.75891 0.97249 1.50783 0.86803 1.83524 1.24158 1.30601 1.76291 1.20060 0.87060 0.83113 0.80848 1.90593 1.64954 1.34961 1.50271 1.19888 0.92494 0.93350 1.08566 1.21890 0.93455 0.98631 0.90657 1.22000 0.95307 0.99140 1.05285 1.22838 0.99912 0.87950 0.93017 1.68224 1.03656 1.32243 1.15458 1.23713 0.93414 0.97480 0.96835 1.86458 0.99219 0.87878 1.87471 1.22751 1.04637 1.03934 0.95833 1.21460 0.94582 0.95260 0.96523 1.21135 0.97636 0.97940 0.98614 1.21219 0.98992 0.98769 0.92763 1.21138 0.97791 0.98929 0.97501 1.21467 0.94214 0.94448 0.97824 0.90730 0.83299 0.84379 0.82585 0.85792 0.86040 0.86206 0.86026 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.80 13.96 55.49 0.77 -24.03 16 2 C 0.07 1.84 5.50 -17.52 -0.10 1.74 16 3 Si 0.90 20.53 28.62 -169.99 -4.86 15.67 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.37 -10.74 10.11 30.94 0.31 -10.43 16 8 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 9 O -0.24 -6.16 7.89 -21.82 -0.17 -6.33 16 10 C 0.44 10.63 7.82 34.37 0.27 10.90 16 11 O -0.51 -13.27 13.05 -19.31 -0.25 -13.52 16 12 C -0.13 -2.60 5.91 -104.64 -0.62 -3.22 16 13 C -0.02 -0.31 9.73 -38.87 -0.38 -0.69 16 14 C -0.19 -2.45 10.09 -39.48 -0.40 -2.85 16 15 C 0.12 1.62 11.16 -17.49 -0.20 1.42 16 16 N -0.48 -7.76 9.15 -11.66 -0.11 -7.87 16 17 C 0.13 2.45 7.00 -16.35 -0.11 2.33 16 18 S 0.14 2.58 18.96 -107.50 -2.04 0.54 16 19 C -0.16 -2.43 4.60 -39.06 -0.18 -2.61 16 20 C -0.06 -0.79 9.79 -39.37 -0.39 -1.17 16 21 C -0.13 -1.50 10.04 -39.62 -0.40 -1.89 16 22 C -0.10 -1.02 10.04 -39.54 -0.40 -1.42 16 23 C -0.13 -1.48 10.04 -39.62 -0.40 -1.88 16 24 C -0.06 -0.79 9.79 -39.37 -0.39 -1.18 16 25 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.15 2.34 7.70 -52.49 -0.40 1.93 16 27 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 314.06 15.07 4.73 4.73 Total: -1.00 -32.00 314.06 -8.16 -40.16 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -2.87 Total: 1.58 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.36 Total: -10.93 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.67 Total: -31.90 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.42 Total: -19.85 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.86 Total: 15.67 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.04 Total: 0.54 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.00 -8.16 -40.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022859372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.510 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds