Wall clock time and date at job start Fri Apr 10 2020 20:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47210 * 2 1 4 4 C 1.33385 * 125.20653 * 90.00329 * 3 2 1 5 5 C 1.38420 * 114.92782 * 179.97438 * 4 3 2 6 6 C 1.33396 * 114.91848 * 359.97438 * 5 4 3 7 7 S 1.76199 * 125.20304 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.39863 * 203.54196 * 7 6 5 9 9 O 1.42103 * 106.40286 * 336.45587 * 7 6 5 10 10 N 1.65596 * 107.21880 * 89.99932 * 7 6 5 11 11 C 1.36934 * 119.99863 * 89.99817 * 10 7 6 12 12 H 1.07992 * 120.00443 * 304.20952 * 11 10 7 13 13 C 1.38815 * 119.99801 * 124.20592 * 11 10 7 14 14 N 1.31619 * 120.00118 * 167.60731 * 13 11 10 15 15 Si 1.86801 * 120.00154 * 347.60868 * 13 11 10 16 16 H 1.48498 * 109.47560 * 94.80308 * 15 13 11 17 17 H 1.48505 * 109.47033 * 214.80658 * 15 13 11 18 18 H 1.48502 * 109.46732 * 334.80131 * 15 13 11 19 19 C 1.46495 * 119.99830 * 269.99880 * 10 7 6 20 20 C 1.53002 * 117.49834 * 182.91186 * 19 10 7 21 21 C 1.52992 * 60.00053 * 252.51005 * 20 19 10 22 22 S 1.75886 * 109.59169 * 359.75798 * 6 5 4 23 23 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46946 * 299.99694 * 1 2 3 25 25 H 1.08996 * 109.47060 * 59.99740 * 1 2 3 26 26 H 1.08998 * 109.47310 * 120.00733 * 2 1 3 27 27 H 1.09009 * 109.47083 * 240.00040 * 2 1 3 28 28 H 1.08004 * 122.53721 * 359.95090 * 4 3 2 29 29 H 1.07994 * 122.54609 * 179.97438 * 5 4 3 30 30 H 0.97004 * 120.00186 * 180.02562 * 14 13 11 31 31 H 1.09004 * 115.55314 * 328.62012 * 19 10 7 32 32 H 1.08997 * 117.49703 * 0.02562 * 20 19 10 33 33 H 1.09004 * 117.50124 * 145.01854 * 20 19 10 34 34 H 1.09001 * 117.50106 * 252.50976 * 21 20 19 35 35 H 1.09002 * 117.49910 * 107.49142 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2888 2.1457 1.0899 5 6 2.7433 3.4296 0.8429 6 6 2.8566 3.7472 -0.4478 7 16 3.4079 5.3020 -1.0667 8 8 2.8742 5.4240 -2.3780 9 8 3.1663 6.2520 -0.0378 10 7 5.0522 5.2063 -1.2380 11 6 5.5935 4.7738 -2.4191 12 1 5.3087 3.8142 -2.8244 13 6 6.5082 5.5691 -3.0957 14 7 7.2095 5.0658 -4.0893 15 14 6.7439 7.3535 -2.5961 16 1 7.8839 7.4564 -1.6501 17 1 7.0262 8.1722 -3.8025 18 1 5.5086 7.8507 -1.9385 19 6 5.9277 5.5842 -0.1259 20 6 7.4377 5.5390 -0.3687 21 6 6.7729 4.4811 0.5142 22 16 2.3786 2.3738 -1.4372 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5139 0.8899 27 1 1.8934 -0.5139 -0.8901 28 1 2.1517 1.7603 2.0894 29 1 2.9877 4.1218 1.6349 30 1 7.8490 5.6214 -4.5619 31 1 5.5460 6.3688 0.5274 32 1 7.7796 5.2285 -1.3560 33 1 8.0497 6.2941 0.1247 34 1 6.9474 4.5402 1.5885 35 1 6.6774 3.4741 0.1079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051155787.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:52:48 Heat of formation + Delta-G solvation = -6.243638 kcal Electronic energy + Delta-G solvation = -20788.490455 eV Core-core repulsion = 17620.679721 eV Total energy + Delta-G solvation = -3167.810734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 301.059 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -37.91379 -37.53848 -36.16813 -34.83185 -33.83309 -32.99373 -31.37982 -28.60318 -24.80650 -24.66870 -22.25469 -21.88503 -20.94590 -19.82315 -18.47332 -17.58292 -17.02986 -16.57745 -15.84960 -15.15884 -14.58601 -14.43400 -14.17710 -13.87721 -13.63456 -13.51555 -13.00184 -12.92536 -12.26921 -12.09973 -11.86726 -11.66588 -11.48384 -11.28823 -11.23779 -11.12232 -11.06483 -10.78520 -10.63659 -10.52597 -10.41446 -10.08162 -9.89246 -9.40964 -8.89169 -8.69492 -8.25247 -7.79631 -6.43836 -4.24875 0.78446 1.33629 1.78767 2.13139 2.72577 3.20257 3.31567 3.40458 4.02184 4.24605 4.53499 4.58777 4.62825 4.89838 4.96909 5.10277 5.31499 5.34747 5.57809 5.60053 5.65403 5.66599 5.74885 5.80264 5.82906 5.99374 6.14129 6.19850 6.22221 6.32212 6.57107 6.71035 7.02342 7.32394 7.61348 8.25070 9.06446 9.10804 10.62101 Molecular weight = 301.06amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.005723 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.837048 B = 4891.770496 C = 4983.222505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.162 4.162 4 C -0.165 4.165 5 C -0.012 4.012 6 C -0.757 4.757 7 S 2.656 3.344 8 O -0.954 6.954 9 O -0.992 6.992 10 N -0.834 5.834 11 C -0.297 4.297 12 H 0.099 0.901 13 C 0.082 3.918 14 N -0.857 5.857 15 Si 0.878 3.122 16 H -0.258 1.258 17 H -0.289 1.289 18 H -0.264 1.264 19 C 0.071 3.929 20 C -0.182 4.182 21 C -0.191 4.191 22 S 0.221 5.779 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.277 0.723 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 -7.702 9.577 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.282 4.282 4 C -0.196 4.196 5 C -0.046 4.046 6 C -0.956 4.956 7 S 2.752 3.248 8 O -0.944 6.944 9 O -0.982 6.982 10 N -0.663 5.663 11 C -0.434 4.434 12 H 0.116 0.884 13 C -0.129 4.129 14 N -0.493 5.493 15 Si 0.704 3.296 16 H -0.183 1.183 17 H -0.216 1.216 18 H -0.189 1.189 19 C -0.037 4.037 20 C -0.221 4.221 21 C -0.231 4.231 22 S 0.488 5.512 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.866 -7.254 7.720 12.624 hybrid contribution 0.436 0.477 1.938 2.043 sum -6.430 -6.777 9.658 13.437 Atomic orbital electron populations 1.21799 0.94170 1.01981 1.02679 1.20161 0.96262 0.89668 1.03480 1.25126 1.04531 1.00755 0.97790 1.20188 1.05620 0.94486 0.99280 1.19858 0.94065 0.95981 0.94681 1.36309 1.24596 1.28061 1.06628 1.04476 0.74733 0.72668 0.72891 1.93485 1.78473 1.84946 1.37461 1.93417 1.86075 1.57926 1.60774 1.52371 1.18459 1.78512 1.16922 1.18574 1.25456 1.03125 0.96239 0.88386 1.25715 0.95266 0.98455 0.93498 1.69796 1.22062 1.37103 1.20314 0.86881 0.80173 0.84281 0.78254 1.18343 1.21599 1.18860 1.21686 0.89923 0.99735 0.92335 1.23528 0.94062 1.01368 1.03158 1.23258 1.06068 0.96529 0.97273 1.84221 1.60186 1.00984 1.05796 0.91954 0.92254 0.92248 0.89904 0.90474 0.84251 0.83429 0.91333 0.86179 0.85852 0.89622 0.89808 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.90 37.16 0.37 -0.95 16 2 C -0.06 -0.57 6.43 -27.88 -0.18 -0.75 16 3 C -0.16 -2.24 5.76 -36.01 -0.21 -2.45 16 4 C -0.16 -2.29 10.05 -41.21 -0.41 -2.70 16 5 C -0.01 -0.19 9.84 -41.21 -0.41 -0.60 16 6 C -0.76 -14.68 6.57 29.04 0.19 -14.49 16 7 S 2.66 61.65 5.80 -107.50 -0.62 61.03 16 8 O -0.95 -24.89 17.13 -57.17 -0.98 -25.87 16 9 O -0.99 -23.53 16.64 -57.17 -0.95 -24.48 16 10 N -0.83 -19.69 2.45 -53.43 -0.13 -19.82 16 11 C -0.30 -7.77 8.61 -15.06 -0.13 -7.90 16 12 H 0.10 2.71 8.06 -52.49 -0.42 2.29 16 13 C 0.08 2.18 3.87 -17.43 -0.07 2.11 16 14 N -0.86 -23.51 13.97 55.49 0.78 -22.73 16 15 Si 0.88 21.05 24.50 -169.99 -4.17 16.88 16 16 H -0.26 -5.59 5.84 56.52 0.33 -5.26 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.26 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.07 1.48 4.85 -67.93 -0.33 1.15 16 20 C -0.18 -3.61 6.58 -26.73 -0.18 -3.79 16 21 C -0.19 -3.41 10.36 -26.74 -0.28 -3.69 16 22 S 0.22 3.83 23.21 -107.50 -2.49 1.33 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.15 2.21 8.05 -52.49 -0.42 1.79 16 30 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.12 2.35 7.47 -51.93 -0.39 1.97 16 32 H 0.12 2.78 5.04 -51.93 -0.26 2.51 16 33 H 0.09 1.50 7.82 -51.93 -0.41 1.10 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -30.47 316.38 -9.92 -40.39 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.49 Total: 2.56 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: -1.63 Total: -34.05 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.64 Total: -42.55 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -1.93 Total: -50.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.17 Total: 16.88 kcal Atomic # 16 Polarization: 65.48 SS G_CDS: -3.12 Total: 62.36 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.47 -9.92 -40.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051155787.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.147 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds